jgi.p|Nanoce1779_2|636715, mRNA_360 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|636715
Unique NamemRNA_360
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length885
Alignment locationscaffold_3:897089..898309 -

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Properties
Property NameValue
TranscriptId636801
TrackFilteredModels2
ProteinId636715
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:897089..898309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636715gene_360Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636715mRNA_360-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_360CDS_360Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_360 ID=mRNA_360|Name=jgi.p|Nanoce1779_2|636715|organism=Nannochloropsis oceanica|type=mRNA|length=885bp
ATGTCGGGACGAAGTCTCAGGATCCACAAGAATATGCTCAGCCAAGGAAG
GACCCAGGTCATTGCACAGGTCGCAGACTGCTTCATTGTCATCAGGTGTG
ACGACATGCTGTGTATCTGGGACCAACATGCATTGCATGAGCGCATCCGC
GTTGAGTCCTTCCTTAGGAATGTGAACCTTCCCCAGCAACAAATTATCCG
ACAGTCCATGAAACCCTTCAAACCCCTCGTCTTCCCCAATTATCCGCCCG
ACGACCTGGAACTCCTTCGCAAACCTACCACGCGTGCCTTTCTCAACCGT
TTTTGCCTTGATTTCCAACTTATTAAGACCTCTGTCTTAGTCCGCACGCG
GCCCATCATCGTCGAAGAACCACTGCCGGACGTGACCGAACTCTTACCTG
CCTTGCTCCGAGATTTGCGCGATATCCAAAGCCGACCTGGAGCAGACCCT
ATGCAGGCTCTCCCCCCCTGCATCCGGGACATCCTCAGCTCCAAAGCCTG
TCGTGGCGCTATTATGTTCCACACCAAGCTCAGTCGCTTCACCTGTAAAC
GACTTCTAATCGAAATCTCATCCACTTCTTTTCCGTTTAACTGCGCGCAT
GGCCGGCCCTCCGTCGTGCCATTGTGTTTGCTCGACCACGCTGCTGGAGG
CTCTCCCTTGTCCTCATCCACGACCTCTTCCTTACCCTCATCCCTGCAGC
AAACGATTGAAAAAATTGAGCGGCCCGGCAGAGGAGGTCAAGGGAGGAAT
GGGAGTAAGAGTAGGAGCAGCAGCTGTAGTAGCATGAATATGCCGTTGCG
ATTTCGTCTCGGGGGGAGCAGTGGAGGGCATTCGTTGTTAGCCCCTCACC
TGGAGAGACTGCGTACGAAAGAGATAAGCAACTAG
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protein sequence of jgi.p|Nanoce1779_2|636715

>mRNA_360-protein ID=mRNA_360-protein|Name=jgi.p|Nanoce1779_2|636715|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MSGRSLRIHKNMLSQGRTQVIAQVADCFIVIRCDDMLCIWDQHALHERIR
VESFLRNVNLPQQQIIRQSMKPFKPLVFPNYPPDDLELLRKPTTRAFLNR
FCLDFQLIKTSVLVRTRPIIVEEPLPDVTELLPALLRDLRDIQSRPGADP
MQALPPCIRDILSSKACRGAIMFHTKLSRFTCKRLLIEISSTSFPFNCAH
GRPSVVPLCLLDHAAGGSPLSSSTTSSLPSSLQQTIEKIERPGRGGQGRN
GSKSRSSSCSSMNMPLRFRLGGSSGGHSLLAPHLERLRTKEISN*
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mRNA from alignment at scaffold_3:897089..898309-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_360 ID=mRNA_360|Name=jgi.p|Nanoce1779_2|636715|organism=Nannochloropsis oceanica|type=mRNA|length=1221bp|location=Sequence derived from alignment at scaffold_3:897089..898309- (Nannochloropsis oceanica)
ATGTCGGGACGAAGTCTCAGGATCCACAAGAATATGCTCAGCCAAGGAAG
GACCCAGGTCATTGCACAGGTATGTTTAGCCTGAGGAGGAGGAGGAGGTG
GAGAACAGAAGAACAAGAAGAAGAAGAAGGGAGAAGCCGGATGGAAAATT
GAAGGTTAGATGAATGAGAAGGATTATGAGAAGAACAGCTGAAATGGTGA
TGGATGATGAAAGCAGGAATCCGGTGATGCAGACACACCCCTTCGATCAT
TACACGCCCCATAGGTCGCAGACTGCTTCATTGTCATCAGGTGTGACGAC
ATGCTGTGTATCTGGGACCAACATGCATTGCATGAGCGCATCCGCGTTGA
GTCCTTCCTTAGGAATGTGAACCTTCCCCAGCAACAAATTATCCGACAGT
CCATGAAACCCTTCAAACCCCTCGTCTTCCCCAATTATCCGCCCGACGAC
CTGGAACTCCTTCGCAAACCTACCACGCGTGCCTTTCTCAACCGTTTTTG
CCTTGATTTCCAACTTATTAAGACCTCTGTCTTAGTCCGCACGCGGCCCA
TCATCGTCGAAGAACCACTGCCGGACGTGACCGAACTCTTACCTGCCTTG
CTCCGAGATTTGCGCGATATCCAAAGCCGACCTGGAGCAGACCCTATGCA
GGTAATGATACGGTCTTATTCTATCTAAAGCCCACTTCCTGCCCGCAAGC
ACTAAGCCGGAGACTCGGGTTCAGGATCGCTCATATTAATGTTTCCACCA
ACCTATCCGTCCGTCCGTCCGTCCCTCCCCTCCCTTTTCCAGGCTCTCCC
CCCCTGCATCCGGGACATCCTCAGCTCCAAAGCCTGTCGTGGCGCTATTA
TGTTCCACACCAAGCTCAGTCGCTTCACCTGTAAACGACTTCTAATCGAA
ATCTCATCCACTTCTTTTCCGTTTAACTGCGCGCATGGCCGGCCCTCCGT
CGTGCCATTGTGTTTGCTCGACCACGCTGCTGGAGGCTCTCCCTTGTCCT
CATCCACGACCTCTTCCTTACCCTCATCCCTGCAGCAAACGATTGAAAAA
ATTGAGCGGCCCGGCAGAGGAGGTCAAGGGAGGAATGGGAGTAAGAGTAG
GAGCAGCAGCTGTAGTAGCATGAATATGCCGTTGCGATTTCGTCTCGGGG
GGAGCAGTGGAGGGCATTCGTTGTTAGCCCCTCACCTGGAGAGACTGCGT
ACGAAAGAGATAAGCAACTAG
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Coding sequence (CDS) from alignment at scaffold_3:897089..898309-

>mRNA_360 ID=mRNA_360|Name=jgi.p|Nanoce1779_2|636715|organism=Nannochloropsis oceanica|type=CDS|length=2655bp|location=Sequence derived from alignment at scaffold_3:897089..898309- (Nannochloropsis oceanica)
GCTCTCCCCCCCTGCATCCGGGACATCCTCAGCTCCAAAGCCTGTCGTGG
CGCTATTATGTTCCACACCAAGCTCAGTCGCTTCACCTGTAAACGACTTC
TAATCGAAATCTCATCCACTTCTTTTCCGTTTAACTGCGCGCATGGCCGG
CCCTCCGTCGTGCCATTGTGTTTGCTCGACCACGCTGCTGGAGGCTCTCC
CTTGTCCTCATCCACGACCTCTTCCTTACCCTCATCCCTGCAGCAAACGA
TTGAAAAAATTGAGCGGCCCGGCAGAGGAGGTCAAGGGAGGAATGGGAGT
AAGAGTAGGAGCAGCAGCTGTAGTAGCATGAATATGCCGTTGCGATTTCG
TCTCGGGGGGAGCAGTGGAGGGCATTCGTTGTTAGCCCCTCACCTGGAGA
GACTGCGTACGAAAGAGATAAGCAACTAGGTCGCAGACTGCTTCATTGTC
ATCAGGTGTGACGACATGCTGTGTATCTGGGACCAACATGCATTGCATGA
GCGCATCCGCGTTGAGTCCTTCCTTAGGAATGTGAACCTTCCCCAGCAAC
AAATTATCCGACAGTCCATGAAACCCTTCAAACCCCTCGTCTTCCCCAAT
TATCCGCCCGACGACCTGGAACTCCTTCGCAAACCTACCACGCGTGCCTT
TCTCAACCGTTTTTGCCTTGATTTCCAACTTATTAAGACCTCTGTCTTAG
TCCGCACGCGGCCCATCATCGTCGAAGAACCACTGCCGGACGTGACCGAA
CTCTTACCTGCCTTGCTCCGAGATTTGCGCGATATCCAAAGCCGACCTGG
AGCAGACCCTATGCAGATGTCGGGACGAAGTCTCAGGATCCACAAGAATA
TGCTCAGCCAAGGAAGGACCCAGGTCATTGCACAGGCTCTCCCCCCCTGC
ATCCGGGACATCCTCAGCTCCAAAGCCTGTCGTGGCGCTATTATGTTCCA
CACCAAGCTCAGTCGCTTCACCTGTAAACGACTTCTAATCGAAATCTCAT
CCACTTCTTTTCCGTTTAACTGCGCGCATGGCCGGCCCTCCGTCGTGCCA
TTGTGTTTGCTCGACCACGCTGCTGGAGGCTCTCCCTTGTCCTCATCCAC
GACCTCTTCCTTACCCTCATCCCTGCAGCAAACGATTGAAAAAATTGAGC
GGCCCGGCAGAGGAGGTCAAGGGAGGAATGGGAGTAAGAGTAGGAGCAGC
AGCTGTAGTAGCATGAATATGCCGTTGCGATTTCGTCTCGGGGGGAGCAG
TGGAGGGCATTCGTTGTTAGCCCCTCACCTGGAGAGACTGCGTACGAAAG
AGATAAGCAACTAGGTCGCAGACTGCTTCATTGTCATCAGGTGTGACGAC
ATGCTGTGTATCTGGGACCAACATGCATTGCATGAGCGCATCCGCGTTGA
GTCCTTCCTTAGGAATGTGAACCTTCCCCAGCAACAAATTATCCGACAGT
CCATGAAACCCTTCAAACCCCTCGTCTTCCCCAATTATCCGCCCGACGAC
CTGGAACTCCTTCGCAAACCTACCACGCGTGCCTTTCTCAACCGTTTTTG
CCTTGATTTCCAACTTATTAAGACCTCTGTCTTAGTCCGCACGCGGCCCA
TCATCGTCGAAGAACCACTGCCGGACGTGACCGAACTCTTACCTGCCTTG
CTCCGAGATTTGCGCGATATCCAAAGCCGACCTGGAGCAGACCCTATGCA
GATGTCGGGACGAAGTCTCAGGATCCACAAGAATATGCTCAGCCAAGGAA
GGACCCAGGTCATTGCACAGGCTCTCCCCCCCTGCATCCGGGACATCCTC
AGCTCCAAAGCCTGTCGTGGCGCTATTATGTTCCACACCAAGCTCAGTCG
CTTCACCTGTAAACGACTTCTAATCGAAATCTCATCCACTTCTTTTCCGT
TTAACTGCGCGCATGGCCGGCCCTCCGTCGTGCCATTGTGTTTGCTCGAC
CACGCTGCTGGAGGCTCTCCCTTGTCCTCATCCACGACCTCTTCCTTACC
CTCATCCCTGCAGCAAACGATTGAAAAAATTGAGCGGCCCGGCAGAGGAG
GTCAAGGGAGGAATGGGAGTAAGAGTAGGAGCAGCAGCTGTAGTAGCATG
AATATGCCGTTGCGATTTCGTCTCGGGGGGAGCAGTGGAGGGCATTCGTT
GTTAGCCCCTCACCTGGAGAGACTGCGTACGAAAGAGATAAGCAACTAGG
TCGCAGACTGCTTCATTGTCATCAGGTGTGACGACATGCTGTGTATCTGG
GACCAACATGCATTGCATGAGCGCATCCGCGTTGAGTCCTTCCTTAGGAA
TGTGAACCTTCCCCAGCAACAAATTATCCGACAGTCCATGAAACCCTTCA
AACCCCTCGTCTTCCCCAATTATCCGCCCGACGACCTGGAACTCCTTCGC
AAACCTACCACGCGTGCCTTTCTCAACCGTTTTTGCCTTGATTTCCAACT
TATTAAGACCTCTGTCTTAGTCCGCACGCGGCCCATCATCGTCGAAGAAC
CACTGCCGGACGTGACCGAACTCTTACCTGCCTTGCTCCGAGATTTGCGC
GATATCCAAAGCCGACCTGGAGCAGACCCTATGCAGATGTCGGGACGAAG
TCTCAGGATCCACAAGAATATGCTCAGCCAAGGAAGGACCCAGGTCATTG
CACAG
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Synonyms
Publications