jgi.p|Nanoce1779_2|575984, mRNA_36 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575984
Unique Name	mRNA_36
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1182
Alignment location	scaffold_3:105953..107952 -

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Properties


Property Name	Value
TranscriptId	576070
Track	FilteredModels2
ProteinId	575984

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:105953..107952 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575984	gene_36	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575984	mRNA_36-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_36	CDS_36	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:105953..107952-
coding sequence from alignment at scaffold_3:105953..107952-

mRNA sequence

>mRNA_36 ID=mRNA_36|Name=jgi.p|Nanoce1779_2|575984|organism=Nannochloropsis oceanica|type=mRNA|length=1182bp
CAGAGGCCCTGTTCCCTTCCCCATTGGGCCCTCGATCCTCTCATCAACTA
CCCCAGAACAACAACGCATCAACTCGCTGTCCCATTTACCTCCACCATGA
CTGCAGCGCAGCGTTCTCTCCGCTCCTTCTCTCTCCTTCTCACCCTCGTC
TCCCTCTTCCTGCTCCCCGCCCTCCTACTCTCGGCCTCCACTGACAAGCC
CCAAGGGCATACGGGCATCGTCAAGCCCTTCAAACCCGGCCCTCCCGGAA
TCAAGCTCAAGAGCGGCGAAATTGAAAAACTCCGCAAAGGTGAAGCCGTA
AAGCAACAGCTGTCCTCCGGCTCGGGTGGGCGGGGCTTGGTCATCCAGGA
TGTGCATGCCCCGCCTGAAGTGGTGTGGGGAAGGATCATGGACTTCCCGG
CTTACACCCGTATGGTGCCTCGGGTGAGTCTGTGTGAGAATTACAAGGTG
CAGGAGAACTACATGCAGGGGCTGAAGGAGATCTACACGAGGATGCGGTT
GACGGTGATGGGTTTCAATGTCGAGTATTTTATTCACCACAAATACTACC
CAAAAATGAACACGATCGTGTGGACACTGGACTACAACAGGGAGAGTGAT
TTGGATGACTCTGTGGGCTACTGGCACGTGATTCCCCATCCTGACCCCGA
CAGGGAGCACTGGTCTCGTGTGTACTACTCCATTGACATGCGCCTCAAGT
CTTGGATGCCAAGCTTCGTCAAGAATGTGCTGAAGAACCAGGCCCTGACG
CAAGCCACCTCATGGGTGAAGAAGGAGAGCGAGAGGATTGGCGTTCCATC
CAAATTTCGAAAACGTTCAATGGGCTCCCCGCAGCCCCCTGATATGGCCA
AGATGGGCGAGGGCCTGCGGGATATTAAGGAGGGCTGGTGCCGCCGTATT
AAGGCTGCAACGAGCTGTATTAATGAAAGGTTCCCGTGGGCGGGAGGGAA
GGCGACGCCGGTGGTGGGGTCGGCGAAGGGCGGGAAGTAAGGAAGGACGG
AGGAGGGAGTGATGGGATGGGAAGACCAGAGAGAGAAAGAAAAGGATTGA
GACCTTTTCATGGGAATAGATTGGAAGTGAGAGATGAAGGAGAATGAGGA
GGAGGAGGAGGCGGCGGGAGTGTCGTCGAGAGGAGAGAGAGGGAAGAGAG
AAATGGAGGCCACAACTAACAGTTTTGTAATG

protein sequence of jgi.p|Nanoce1779_2|575984

>mRNA_36-protein ID=mRNA_36-protein|Name=jgi.p|Nanoce1779_2|575984|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MTAAQRSLRSFSLLLTLVSLFLLPALLLSASTDKPQGHTGIVKPFKPGPP
GIKLKSGEIEKLRKGEAVKQQLSSGSGGRGLVIQDVHAPPEVVWGRIMDF
PAYTRMVPRVSLCENYKVQENYMQGLKEIYTRMRLTVMGFNVEYFIHHKY
YPKMNTIVWTLDYNRESDLDDSVGYWHVIPHPDPDREHWSRVYYSIDMRL
KSWMPSFVKNVLKNQALTQATSWVKKESERIGVPSKFRKRSMGSPQPPDM
AKMGEGLRDIKEGWCRRIKAATSCINERFPWAGGKATPVVGSAKGGK*

mRNA from alignment at scaffold_3:105953..107952-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_36 ID=mRNA_36|Name=jgi.p|Nanoce1779_2|575984|organism=Nannochloropsis oceanica|type=mRNA|length=2000bp|location=Sequence derived from alignment at scaffold_3:105953..107952- (Nannochloropsis oceanica)
CAGAGGCCCTGTTCCCTTCCCCATTGGGCCCTCGATCCTCTCATCAACTA
CCCCAGAACAACAACGCATCAACTCGCTGTCCCATTTACCTCCACCATGA
CTGCAGCGCAGCGTTCTCTCCGCTCCTTCTCTCTCCTTCTCACCCTCGTC
TCCCTCTTCCTGCTCCCCGCCCTCCTACTCTCGGCCTCCACTGACAAGCC
CCAAGGGCATACGGGCATCGTCAAGCCCTTCAAACCCGGCCCTCCCGGAA
TCAAGCTCAAGAGCGGCGAAATTGAAAAACTCCGCAAAGGTGAAGCCGTA
AAGCAACAGCTGTCCTCCGGCTCGGGTGGGCGGGGCTTGGTCATCCAGGA
TGTGCATGCCCCGCCTGAAGTGGTGTGGGGAAGGATCATGGACTTCCCGG
CTTACACCCGTATGGTGCCTCGGGTGAGTCTGTGTGAGAATTACAAGGTG
CAGGAGAACTACATGCAGGGGCTGAAGGAGATCTACACGAGGATGCGGTT
GACGGTGATGGGTTTCAATGTCGAGTATTTTATTCACCACAAATACTACC
CAAAAATGAACACGATCGTGTGGACACTGGACTACAACAGGGAGGTACGT
TCGGGGGTGGGATATCCTCTCTATCTCTCACTGTCTCCATCTCTATGTAT
ACATACATGTGGATATATAGACAGATGGGTGGATAAATTTATTTATAGAG
AGAGAGAGAGAGATGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAT
AGGTATATTCGGTGCTGGCCTTGGGCATCTACGTTTCATCAATCCACCCA
TCCTCACCTTCCTCCCTCCCTCCCTTTCCCCTTCCCTCCAGAGTGATTTG
GATGACTCTGTGGGCTACTGGCACGTGATTCCCCATCCTGACCCCGACAG
GGAGCACTGGTCTCGTGTGTACTACTCCATTGACATGCGCCTCAAGTCTT
GGATGCCAAGCTTCGTCAAGAATGTGCTGAAGAACCAGGTCGGTCAGCCG
GCCCTCACTTCCTCCTTCCCTCACTCCCTCCACTCCCTCCACTCCAATTG
CTTTTGAACCTATTTCGTCGACCTTCCCTCCGTCCCACCCTCCCTCCCAC
CTAGTGAATGCAAAGTTCGACTGAGTTTTCCACTTTACTTCCTTCAATCC
ACTCTCCCCCTCCCACTCCCCCCCTCCTTCATTTCTTCTCACTGGCCGTC
ACCAAAGGTACCCCCTGGGTGTGGAAGGGGAGCTGGCAATTCCAAACCTC
TCACTCCCCTCCCTCCCTCCCTCCCTCCCCCCCTCTCCTTCGTTTCCTCC
CACAGGCCCTGACGCAAGCCACCTCATGGGTGAAGAAGGAGAGCGAGAGG
ATTGGCGTTCCATCCAAATTTCGAAAACGTTCAATGGGCTCCCCGCAGGT
AGGGAAGGAGGGAAAGAGGGAGGGAAGGAGGGAGGGAGGGAAGGAGTTGA
TCATGAATGCAGGCATCAGCGCGTCGGACGTGTGGGCAGGTAAGAAGAAA
AGTGAGAAAATGAGTAGAGGGCCAGTAGGCCAAGACGGAAAATAGAAAAT
GAACAGATGACGAAGAAGAGAAGAAAGCGGTGTCCAGATCAGAACGTCGC
TCCTTCTGTATTCTCTTCTGAGTATACCCTTACTCCCTCCCTCCCTCCCT
AGCCCCCTGATATGGCCAAGATGGGCGAGGGCCTGCGGGATATTAAGGAG
GGCTGGTGCCGCCGTATTAAGGCTGCAACGAGCTGTATTAATGAAAGGTT
CCCGTGGGCGGGAGGGAAGGCGACGCCGGTGGTGGGGTCGGCGAAGGGCG
GGAAGTAAGGAAGGACGGAGGAGGGAGTGATGGGATGGGAAGACCAGAGA
GAGAAAGAAAAGGATTGAGACCTTTTCATGGGAATAGATTGGAAGTGAGA
GATGAAGGAGAATGAGGAGGAGGAGGAGGCGGCGGGAGTGTCGTCGAGAG
GAGAGAGAGGGAAGAGAGAAATGGAGGCCACAACTAACAGTTTTGTAATG

Coding sequence (CDS) from alignment at scaffold_3:105953..107952-

>mRNA_36 ID=mRNA_36|Name=jgi.p|Nanoce1779_2|575984|organism=Nannochloropsis oceanica|type=CDS|length=3576bp|location=Sequence derived from alignment at scaffold_3:105953..107952- (Nannochloropsis oceanica)
CCCCCTGATATGGCCAAGATGGGCGAGGGCCTGCGGGATATTAAGGAGGG
CTGGTGCCGCCGTATTAAGGCTGCAACGAGCTGTATTAATGAAAGGTTCC
CGTGGGCGGGAGGGAAGGCGACGCCGGTGGTGGGGTCGGCGAAGGGCGGG
AAGTAAGCCCTGACGCAAGCCACCTCATGGGTGAAGAAGGAGAGCGAGAG
GATTGGCGTTCCATCCAAATTTCGAAAACGTTCAATGGGCTCCCCGCAGA
GTGATTTGGATGACTCTGTGGGCTACTGGCACGTGATTCCCCATCCTGAC
CCCGACAGGGAGCACTGGTCTCGTGTGTACTACTCCATTGACATGCGCCT
CAAGTCTTGGATGCCAAGCTTCGTCAAGAATGTGCTGAAGAACCAGATGA
CTGCAGCGCAGCGTTCTCTCCGCTCCTTCTCTCTCCTTCTCACCCTCGTC
TCCCTCTTCCTGCTCCCCGCCCTCCTACTCTCGGCCTCCACTGACAAGCC
CCAAGGGCATACGGGCATCGTCAAGCCCTTCAAACCCGGCCCTCCCGGAA
TCAAGCTCAAGAGCGGCGAAATTGAAAAACTCCGCAAAGGTGAAGCCGTA
AAGCAACAGCTGTCCTCCGGCTCGGGTGGGCGGGGCTTGGTCATCCAGGA
TGTGCATGCCCCGCCTGAAGTGGTGTGGGGAAGGATCATGGACTTCCCGG
CTTACACCCGTATGGTGCCTCGGGTGAGTCTGTGTGAGAATTACAAGGTG
CAGGAGAACTACATGCAGGGGCTGAAGGAGATCTACACGAGGATGCGGTT
GACGGTGATGGGTTTCAATGTCGAGTATTTTATTCACCACAAATACTACC
CAAAAATGAACACGATCGTGTGGACACTGGACTACAACAGGGAGCCCCCT
GATATGGCCAAGATGGGCGAGGGCCTGCGGGATATTAAGGAGGGCTGGTG
CCGCCGTATTAAGGCTGCAACGAGCTGTATTAATGAAAGGTTCCCGTGGG
CGGGAGGGAAGGCGACGCCGGTGGTGGGGTCGGCGAAGGGCGGGAAGTAA
GCCCTGACGCAAGCCACCTCATGGGTGAAGAAGGAGAGCGAGAGGATTGG
CGTTCCATCCAAATTTCGAAAACGTTCAATGGGCTCCCCGCAGAGTGATT
TGGATGACTCTGTGGGCTACTGGCACGTGATTCCCCATCCTGACCCCGAC
AGGGAGCACTGGTCTCGTGTGTACTACTCCATTGACATGCGCCTCAAGTC
TTGGATGCCAAGCTTCGTCAAGAATGTGCTGAAGAACCAGATGACTGCAG
CGCAGCGTTCTCTCCGCTCCTTCTCTCTCCTTCTCACCCTCGTCTCCCTC
TTCCTGCTCCCCGCCCTCCTACTCTCGGCCTCCACTGACAAGCCCCAAGG
GCATACGGGCATCGTCAAGCCCTTCAAACCCGGCCCTCCCGGAATCAAGC
TCAAGAGCGGCGAAATTGAAAAACTCCGCAAAGGTGAAGCCGTAAAGCAA
CAGCTGTCCTCCGGCTCGGGTGGGCGGGGCTTGGTCATCCAGGATGTGCA
TGCCCCGCCTGAAGTGGTGTGGGGAAGGATCATGGACTTCCCGGCTTACA
CCCGTATGGTGCCTCGGGTGAGTCTGTGTGAGAATTACAAGGTGCAGGAG
AACTACATGCAGGGGCTGAAGGAGATCTACACGAGGATGCGGTTGACGGT
GATGGGTTTCAATGTCGAGTATTTTATTCACCACAAATACTACCCAAAAA
TGAACACGATCGTGTGGACACTGGACTACAACAGGGAGCCCCCTGATATG
GCCAAGATGGGCGAGGGCCTGCGGGATATTAAGGAGGGCTGGTGCCGCCG
TATTAAGGCTGCAACGAGCTGTATTAATGAAAGGTTCCCGTGGGCGGGAG
GGAAGGCGACGCCGGTGGTGGGGTCGGCGAAGGGCGGGAAGTAAGCCCTG
ACGCAAGCCACCTCATGGGTGAAGAAGGAGAGCGAGAGGATTGGCGTTCC
ATCCAAATTTCGAAAACGTTCAATGGGCTCCCCGCAGAGTGATTTGGATG
ACTCTGTGGGCTACTGGCACGTGATTCCCCATCCTGACCCCGACAGGGAG
CACTGGTCTCGTGTGTACTACTCCATTGACATGCGCCTCAAGTCTTGGAT
GCCAAGCTTCGTCAAGAATGTGCTGAAGAACCAGATGACTGCAGCGCAGC
GTTCTCTCCGCTCCTTCTCTCTCCTTCTCACCCTCGTCTCCCTCTTCCTG
CTCCCCGCCCTCCTACTCTCGGCCTCCACTGACAAGCCCCAAGGGCATAC
GGGCATCGTCAAGCCCTTCAAACCCGGCCCTCCCGGAATCAAGCTCAAGA
GCGGCGAAATTGAAAAACTCCGCAAAGGTGAAGCCGTAAAGCAACAGCTG
TCCTCCGGCTCGGGTGGGCGGGGCTTGGTCATCCAGGATGTGCATGCCCC
GCCTGAAGTGGTGTGGGGAAGGATCATGGACTTCCCGGCTTACACCCGTA
TGGTGCCTCGGGTGAGTCTGTGTGAGAATTACAAGGTGCAGGAGAACTAC
ATGCAGGGGCTGAAGGAGATCTACACGAGGATGCGGTTGACGGTGATGGG
TTTCAATGTCGAGTATTTTATTCACCACAAATACTACCCAAAAATGAACA
CGATCGTGTGGACACTGGACTACAACAGGGAGCCCCCTGATATGGCCAAG
ATGGGCGAGGGCCTGCGGGATATTAAGGAGGGCTGGTGCCGCCGTATTAA
GGCTGCAACGAGCTGTATTAATGAAAGGTTCCCGTGGGCGGGAGGGAAGG
CGACGCCGGTGGTGGGGTCGGCGAAGGGCGGGAAGTAAGCCCTGACGCAA
GCCACCTCATGGGTGAAGAAGGAGAGCGAGAGGATTGGCGTTCCATCCAA
ATTTCGAAAACGTTCAATGGGCTCCCCGCAGAGTGATTTGGATGACTCTG
TGGGCTACTGGCACGTGATTCCCCATCCTGACCCCGACAGGGAGCACTGG
TCTCGTGTGTACTACTCCATTGACATGCGCCTCAAGTCTTGGATGCCAAG
CTTCGTCAAGAATGTGCTGAAGAACCAGATGACTGCAGCGCAGCGTTCTC
TCCGCTCCTTCTCTCTCCTTCTCACCCTCGTCTCCCTCTTCCTGCTCCCC
GCCCTCCTACTCTCGGCCTCCACTGACAAGCCCCAAGGGCATACGGGCAT
CGTCAAGCCCTTCAAACCCGGCCCTCCCGGAATCAAGCTCAAGAGCGGCG
AAATTGAAAAACTCCGCAAAGGTGAAGCCGTAAAGCAACAGCTGTCCTCC
GGCTCGGGTGGGCGGGGCTTGGTCATCCAGGATGTGCATGCCCCGCCTGA
AGTGGTGTGGGGAAGGATCATGGACTTCCCGGCTTACACCCGTATGGTGC
CTCGGGTGAGTCTGTGTGAGAATTACAAGGTGCAGGAGAACTACATGCAG
GGGCTGAAGGAGATCTACACGAGGATGCGGTTGACGGTGATGGGTTTCAA
TGTCGAGTATTTTATTCACCACAAATACTACCCAAAAATGAACACGATCG
TGTGGACACTGGACTACAACAGGGAG

Synonyms

Publications