jgi.p|Nanoce1779_2|582731, mRNA_3599 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582731
Unique Name	mRNA_3599
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1914
Alignment location	scaffold_6:739997..741910 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582817
Track	FilteredModels2
ProteinId	582731

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:739997..741910 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582731	gene_3599	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582731	mRNA_3599-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3599	CDS_3599	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:739997..741910+
coding sequence from alignment at scaffold_6:739997..741910+

mRNA sequence

>mRNA_3599 ID=mRNA_3599|Name=jgi.p|Nanoce1779_2|582731|organism=Nannochloropsis oceanica|type=mRNA|length=1914bp
ACAGAATAAGCCTACGCCTTCCTTGTTGTGCCGGTACTACTGCTGCTTTC
TACCGGCCATCTTGTACATCATTTGCAATAGCCTCCCGCCATACCGGCCC
GACCTCCTCCCCCTCCCTTAGTCAAAGTTCCCCTCCCAAATCCAGCTTTT
CCTGCGAAAGCCATGGCCTCCGCAAACATGTCGCGGTATGAGACGCTGGT
ACGGAAGCTGTACCAGGTGAATTTGTACTGCACTGCCAAGTTGGGCCTGG
AAAACATTCAGGCGTTGCATCAGGCCAGTGGCAGCCCTCTGAAGCGGGTG
CCAAATATTATCCACGTGGGCGGGACTAACGGCAAAGGGTCGGTGGCTTT
CAAGCTGGCCAAGGCCTTGGAGTACTCCCACATCCGGACGGGTCTTTTCG
TATCCCCACACATTGCCAGCTTTCGGGAGCGCATGCAGGTGGACGGGCAG
TTGATCACCGAGGCAGAGGTAGAGGAGCTTTTGGGAGAGGTGTTGCGAGT
CCGCGAAGTTCAAGCAATCCCAGCTACATTTTTTGAAATCACAACTGCAC
TGGCCTTTAACTTCTTTTCTCGTCGGCAGCTGGGGGCAGCGGTGATAGAA
GTGGGTTTGGGCGGGCGTTTGGACGCGACCAACATTATTCATCCTCGCCT
CTCCATCATCACGTCTATTGGCCTCGAGCACACCAGGATCCTCGGCACCA
CCATTCAAGCAATAGCACGCGAAAAGGCGGGTATTATCAAGCCCGGTGTG
CCTGTCGTTCTGGGCCCACACGTTCCCCATGACTTGCTGGGCTCCATCGC
TGCCGAGCGTAGCGCGCCCGTCCTGCTGGTGCCCAAGGGGCCCTACCCGA
ATTTTGAAGAGGAAAACACTGCCATTGCCCGCACCGCACTCAATCACCTG
CGGACGTCCAGCCCGCCCTTGGCCTGGTCACAAGGTGCAGATACCGAGGC
AGCTTTGGTGCGAGGCCTGCAGAGTCGGCCCCCGTGTCGGTTTGAAGAGT
TAGAGCGACAGGTGGCCGGCCAAACAGTGCGGGTCGTCCTGGACGTGGGG
CACAACCCCCCCGCCCTCCGCCGGCTCTTCGAACGCCTTCTTTCCCCAAC
GAAACGAGACATGAAAACGCAAAAGATTAGCGCGTTGACTGAGGCTGAGA
AACCGGTGATTCGCCTCGTGCTTGGGCTATCAGCAGATAAGGACATTACG
GAGTGCCTTCAAACAGTCCTCCAGTTCGTTGACCCTTCTCACGTACACAT
AATCCAAGCCCGCCACCCACGCGCCGCTGCACCGCAAGCCCTTGTCTCCG
CCGCTGCTTCTTTAGGCGCGCCATTGCCGAGGATGAATTATGGGTATGCG
AACATCAAAGAAGGGATTGGCGCTGCTCTCCACGCAGCCGTGAGTGCATA
TGGGGGTGGGGACCGAGATGAACAAAAGCGACCAGAAACAGTGGTGGTAT
GTGGGACATTTTTCATCATGGGCGAGGTCAGAGAAGCGCTGGGTCTTACC
GAACCTCATGACTCGGCAGTGATAGCGGAAGTTGCGGGTGCACAGTTTGC
GGCGGCGCAAGAACTGTTTGAGAATGTGCCTTCATCCCTCCCCCCCCGGT
CGTCCTCGTCGTTGTCGACGATCAACGGTGGGTAGGAAATTAAATCGCTT
ACGTCAGTGAAAAGCGTATCAATGCTTTTCCTTTTGTTATTCAGAATGAA
ATTTGAATCTTGCCTTTTGTAGCTCAGTGTGAGAATGTGTGTGGAAGTGG
ATGTGTGCGGGTATGGACATGGCTGGGATGTACAGAATGGCTAAGAACAT
GAACAGAATCACGTATACCCCAGGAAAAGGTGAGAGTTGATAAACGTGGT
AATATAGCAAGGGGGAAATGATAATTAAGTAAAACAAGTCCTACTTGTTC
GAAACAAAAGTAGT

protein sequence of jgi.p|Nanoce1779_2|582731

>mRNA_3599-protein ID=mRNA_3599-protein|Name=jgi.p|Nanoce1779_2|582731|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MASANMSRYETLVRKLYQVNLYCTAKLGLENIQALHQASGSPLKRVPNII
HVGGTNGKGSVAFKLAKALEYSHIRTGLFVSPHIASFRERMQVDGQLITE
AEVEELLGEVLRVREVQAIPATFFEITTALAFNFFSRRQLGAAVIEVGLG
GRLDATNIIHPRLSIITSIGLEHTRILGTTIQAIAREKAGIIKPGVPVVL
GPHVPHDLLGSIAAERSAPVLLVPKGPYPNFEEENTAIARTALNHLRTSS
PPLAWSQGADTEAALVRGLQSRPPCRFEELERQVAGQTVRVVLDVGHNPP
ALRRLFERLLSPTKRDMKTQKISALTEAEKPVIRLVLGLSADKDITECLQ
TVLQFVDPSHVHIIQARHPRAAAPQALVSAAASLGAPLPRMNYGYANIKE
GIGAALHAAVSAYGGGDRDEQKRPETVVVCGTFFIMGEVREALGLTEPHD
SAVIAEVAGAQFAAAQELFENVPSSLPPRSSSSLSTINGG*

mRNA from alignment at scaffold_6:739997..741910+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3599 ID=mRNA_3599|Name=jgi.p|Nanoce1779_2|582731|organism=Nannochloropsis oceanica|type=mRNA|length=1914bp|location=Sequence derived from alignment at scaffold_6:739997..741910+ (Nannochloropsis oceanica)
ACAGAATAAGCCTACGCCTTCCTTGTTGTGCCGGTACTACTGCTGCTTTC
TACCGGCCATCTTGTACATCATTTGCAATAGCCTCCCGCCATACCGGCCC
GACCTCCTCCCCCTCCCTTAGTCAAAGTTCCCCTCCCAAATCCAGCTTTT
CCTGCGAAAGCCATGGCCTCCGCAAACATGTCGCGGTATGAGACGCTGGT
ACGGAAGCTGTACCAGGTGAATTTGTACTGCACTGCCAAGTTGGGCCTGG
AAAACATTCAGGCGTTGCATCAGGCCAGTGGCAGCCCTCTGAAGCGGGTG
CCAAATATTATCCACGTGGGCGGGACTAACGGCAAAGGGTCGGTGGCTTT
CAAGCTGGCCAAGGCCTTGGAGTACTCCCACATCCGGACGGGTCTTTTCG
TATCCCCACACATTGCCAGCTTTCGGGAGCGCATGCAGGTGGACGGGCAG
TTGATCACCGAGGCAGAGGTAGAGGAGCTTTTGGGAGAGGTGTTGCGAGT
CCGCGAAGTTCAAGCAATCCCAGCTACATTTTTTGAAATCACAACTGCAC
TGGCCTTTAACTTCTTTTCTCGTCGGCAGCTGGGGGCAGCGGTGATAGAA
GTGGGTTTGGGCGGGCGTTTGGACGCGACCAACATTATTCATCCTCGCCT
CTCCATCATCACGTCTATTGGCCTCGAGCACACCAGGATCCTCGGCACCA
CCATTCAAGCAATAGCACGCGAAAAGGCGGGTATTATCAAGCCCGGTGTG
CCTGTCGTTCTGGGCCCACACGTTCCCCATGACTTGCTGGGCTCCATCGC
TGCCGAGCGTAGCGCGCCCGTCCTGCTGGTGCCCAAGGGGCCCTACCCGA
ATTTTGAAGAGGAAAACACTGCCATTGCCCGCACCGCACTCAATCACCTG
CGGACGTCCAGCCCGCCCTTGGCCTGGTCACAAGGTGCAGATACCGAGGC
AGCTTTGGTGCGAGGCCTGCAGAGTCGGCCCCCGTGTCGGTTTGAAGAGT
TAGAGCGACAGGTGGCCGGCCAAACAGTGCGGGTCGTCCTGGACGTGGGG
CACAACCCCCCCGCCCTCCGCCGGCTCTTCGAACGCCTTCTTTCCCCAAC
GAAACGAGACATGAAAACGCAAAAGATTAGCGCGTTGACTGAGGCTGAGA
AACCGGTGATTCGCCTCGTGCTTGGGCTATCAGCAGATAAGGACATTACG
GAGTGCCTTCAAACAGTCCTCCAGTTCGTTGACCCTTCTCACGTACACAT
AATCCAAGCCCGCCACCCACGCGCCGCTGCACCGCAAGCCCTTGTCTCCG
CCGCTGCTTCTTTAGGCGCGCCATTGCCGAGGATGAATTATGGGTATGCG
AACATCAAAGAAGGGATTGGCGCTGCTCTCCACGCAGCCGTGAGTGCATA
TGGGGGTGGGGACCGAGATGAACAAAAGCGACCAGAAACAGTGGTGGTAT
GTGGGACATTTTTCATCATGGGCGAGGTCAGAGAAGCGCTGGGTCTTACC
GAACCTCATGACTCGGCAGTGATAGCGGAAGTTGCGGGTGCACAGTTTGC
GGCGGCGCAAGAACTGTTTGAGAATGTGCCTTCATCCCTCCCCCCCCGGT
CGTCCTCGTCGTTGTCGACGATCAACGGTGGGTAGGAAATTAAATCGCTT
ACGTCAGTGAAAAGCGTATCAATGCTTTTCCTTTTGTTATTCAGAATGAA
ATTTGAATCTTGCCTTTTGTAGCTCAGTGTGAGAATGTGTGTGGAAGTGG
ATGTGTGCGGGTATGGACATGGCTGGGATGTACAGAATGGCTAAGAACAT
GAACAGAATCACGTATACCCCAGGAAAAGGTGAGAGTTGATAAACGTGGT
AATATAGCAAGGGGGAAATGATAATTAAGTAAAACAAGTCCTACTTGTTC
GAAACAAAAGTAGT

Coding sequence (CDS) from alignment at scaffold_6:739997..741910+

>mRNA_3599 ID=mRNA_3599|Name=jgi.p|Nanoce1779_2|582731|organism=Nannochloropsis oceanica|type=CDS|length=1473bp|location=Sequence derived from alignment at scaffold_6:739997..741910+ (Nannochloropsis oceanica)
ATGGCCTCCGCAAACATGTCGCGGTATGAGACGCTGGTACGGAAGCTGTA
CCAGGTGAATTTGTACTGCACTGCCAAGTTGGGCCTGGAAAACATTCAGG
CGTTGCATCAGGCCAGTGGCAGCCCTCTGAAGCGGGTGCCAAATATTATC
CACGTGGGCGGGACTAACGGCAAAGGGTCGGTGGCTTTCAAGCTGGCCAA
GGCCTTGGAGTACTCCCACATCCGGACGGGTCTTTTCGTATCCCCACACA
TTGCCAGCTTTCGGGAGCGCATGCAGGTGGACGGGCAGTTGATCACCGAG
GCAGAGGTAGAGGAGCTTTTGGGAGAGGTGTTGCGAGTCCGCGAAGTTCA
AGCAATCCCAGCTACATTTTTTGAAATCACAACTGCACTGGCCTTTAACT
TCTTTTCTCGTCGGCAGCTGGGGGCAGCGGTGATAGAAGTGGGTTTGGGC
GGGCGTTTGGACGCGACCAACATTATTCATCCTCGCCTCTCCATCATCAC
GTCTATTGGCCTCGAGCACACCAGGATCCTCGGCACCACCATTCAAGCAA
TAGCACGCGAAAAGGCGGGTATTATCAAGCCCGGTGTGCCTGTCGTTCTG
GGCCCACACGTTCCCCATGACTTGCTGGGCTCCATCGCTGCCGAGCGTAG
CGCGCCCGTCCTGCTGGTGCCCAAGGGGCCCTACCCGAATTTTGAAGAGG
AAAACACTGCCATTGCCCGCACCGCACTCAATCACCTGCGGACGTCCAGC
CCGCCCTTGGCCTGGTCACAAGGTGCAGATACCGAGGCAGCTTTGGTGCG
AGGCCTGCAGAGTCGGCCCCCGTGTCGGTTTGAAGAGTTAGAGCGACAGG
TGGCCGGCCAAACAGTGCGGGTCGTCCTGGACGTGGGGCACAACCCCCCC
GCCCTCCGCCGGCTCTTCGAACGCCTTCTTTCCCCAACGAAACGAGACAT
GAAAACGCAAAAGATTAGCGCGTTGACTGAGGCTGAGAAACCGGTGATTC
GCCTCGTGCTTGGGCTATCAGCAGATAAGGACATTACGGAGTGCCTTCAA
ACAGTCCTCCAGTTCGTTGACCCTTCTCACGTACACATAATCCAAGCCCG
CCACCCACGCGCCGCTGCACCGCAAGCCCTTGTCTCCGCCGCTGCTTCTT
TAGGCGCGCCATTGCCGAGGATGAATTATGGGTATGCGAACATCAAAGAA
GGGATTGGCGCTGCTCTCCACGCAGCCGTGAGTGCATATGGGGGTGGGGA
CCGAGATGAACAAAAGCGACCAGAAACAGTGGTGGTATGTGGGACATTTT
TCATCATGGGCGAGGTCAGAGAAGCGCTGGGTCTTACCGAACCTCATGAC
TCGGCAGTGATAGCGGAAGTTGCGGGTGCACAGTTTGCGGCGGCGCAAGA
ACTGTTTGAGAATGTGCCTTCATCCCTCCCCCCCCGGTCGTCCTCGTCGT
TGTCGACGATCAACGGTGGGTAG

Synonyms

Publications