jgi.p|Nanoce1779_2|564511, mRNA_3598 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|564511
Unique Name	mRNA_3598
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1674
Alignment location	scaffold_6:737966..739639 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	564597
Track	FilteredModels2
ProteinId	564511

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:737966..739639 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|564511	gene_3598	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3598	CDS_3598	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|564511	mRNA_3598-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:737966..739639-
coding sequence from alignment at scaffold_6:737966..739639-

mRNA sequence

>mRNA_3598 ID=mRNA_3598|Name=jgi.p|Nanoce1779_2|564511|organism=Nannochloropsis oceanica|type=mRNA|length=1674bp
ATGCATGAGCTGTCGACCCTATGGCAATTCGAGCGGGACACCTGCAAAGT
GCTGCAAGAGAGCCTCGATGAGCGGGAGGCAGACCTAAAGCAGTGTGTCG
ATGAGCTTGCGCGCTTGGAGGGATATCACGCATACGTAAATGAAATCCTG
CTCAGTGCAGGGAACGGTGATGCTTTCAATTCGAAGTGTGCCTCGTCATC
CTCTACTGACCCGGAGATTGTAATCGACGACCCCTTCTTACTGTGCAACG
CTGCAGAAAGACTTGTGTTGGAGGCAGTAGCCGGTCGACGGGCGCACCTC
TATCTGCTCGACACCGTGGCGGAAAACGATGGCAAAGTGTATCTTCAGAG
CTGGTTAGTCGATGAAGATGGACAGCGTGAGGTGGCGCGGGTGCCCGTGG
AAGCACGGCGAGAGGAGGACGAGCAGGATCCTGAGAAGGCCTCGGCTGCG
CATGCATTGGTCTGTGCGCTGCAAGAAGAGGAGCCCTTGCTACCGGGGGG
CGCATGCCTAGTCGCAAGAGTTGTGGACCGAGCAGGGCTTGTCTTGGGAG
TGGTGCAGATCATAAAGCGGCAGCGGTCTCTAGGGAGCCAAGACGAAGCA
GATAGCCCTTTCACACAAGCAGATTTAGCAGCCCTGGGCAACGTGCAAGA
CCAGTTGGCATCCACCCTCTTGCTCCTCCGCCTGCTACAAAGGCGGAATC
GGCTGCAAGACAACATGGTAGCCATAGCCGCTCACAACAATATGCTTACC
AGCAGCAACAGTAACGACAACAGCAGAAGCAGCAGTCCGCAGCGGATGCG
TAGCTTGAGAACTTCCCCAGCGGCAGCAGCAACCGCGACGGGAACCGACG
TGTCCACTACATTCTGTCCCACACTCTCCAACGGACGTATGCCCGTCTCA
TCTTTCTGCAAAGTCACGGCACGAGGACGAGAGGCTATCATCAGGGAAGA
GGAGGAAAAGGCAGCAATAGCCGGAGCAACCGCCATAACCAGCCAGATAC
AGCTACAGCAGCAGCACGAAGAAGAAGAAGGATTGAGAGGGAAATACATC
AAGGCCAAGATCTACATTCGTCAACTAGAGAAGGAGCTCAGACAGAAGGT
GAGGGGGCAAGAGCGGGCGTTGCTTGCCCGGCAGGCGAGTGAGGGAGCCA
AACGTATATTTGGCAGGGTGGAAGAAATGGAAGCACTCGTAGCTGAACTC
TCCATAAGGCAAGAGCAGCTAAGATACGAGAATGATGCACTTTCAACAGC
CAAGATACAGGCTGAGTTAGCAGCAAACGCAGCAACAGCCCAAGCCGAGG
CGAAAGCCCGCATGGAAATCGATACGTTGGCTGAGTCTAAAGCACGTGCC
GAGGTGGAATTGCGTGCTCAAATTCGTCAGCTGGAGCGGGAGCAAGAAAC
AGTGAAGGCCACAGTGGCCCGATTGAAAGCGGAGGCGAAGGCGTCAGAGG
TGGAAAGGGAGCAGATGCGGCATGATATGCGGCGATGCCAAAAAAAGCTG
GAGAAGAGCCAGAACGCTGTGAAGGACGCGCGAGTGTATCAAGAAATTAC
CCAAGCGGAGCTCTTGGATTTGAAGGAAAGTCTGCAGCGCATGGAAGCCG
GGACGAACGATTTGCGTCAACAGCTGTTATGTCAGGAAGGGGAGGGAGAG
GGTGGGAGGCCGAGGGTTTTGTAA

protein sequence of jgi.p|Nanoce1779_2|564511

>mRNA_3598-protein ID=mRNA_3598-protein|Name=jgi.p|Nanoce1779_2|564511|organism=Nannochloropsis oceanica|type=polypeptide|length=558bp
MHELSTLWQFERDTCKVLQESLDEREADLKQCVDELARLEGYHAYVNEIL
LSAGNGDAFNSKCASSSSTDPEIVIDDPFLLCNAAERLVLEAVAGRRAHL
YLLDTVAENDGKVYLQSWLVDEDGQREVARVPVEARREEDEQDPEKASAA
HALVCALQEEEPLLPGGACLVARVVDRAGLVLGVVQIIKRQRSLGSQDEA
DSPFTQADLAALGNVQDQLASTLLLLRLLQRRNRLQDNMVAIAAHNNMLT
SSNSNDNSRSSSPQRMRSLRTSPAAAATATGTDVSTTFCPTLSNGRMPVS
SFCKVTARGREAIIREEEEKAAIAGATAITSQIQLQQQHEEEEGLRGKYI
KAKIYIRQLEKELRQKVRGQERALLARQASEGAKRIFGRVEEMEALVAEL
SIRQEQLRYENDALSTAKIQAELAANAATAQAEAKARMEIDTLAESKARA
EVELRAQIRQLEREQETVKATVARLKAEAKASEVEREQMRHDMRRCQKKL
EKSQNAVKDARVYQEITQAELLDLKESLQRMEAGTNDLRQQLLCQEGEGE
GGRPRVL*

mRNA from alignment at scaffold_6:737966..739639-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3598 ID=mRNA_3598|Name=jgi.p|Nanoce1779_2|564511|organism=Nannochloropsis oceanica|type=mRNA|length=1674bp|location=Sequence derived from alignment at scaffold_6:737966..739639- (Nannochloropsis oceanica)
ATGCATGAGCTGTCGACCCTATGGCAATTCGAGCGGGACACCTGCAAAGT
GCTGCAAGAGAGCCTCGATGAGCGGGAGGCAGACCTAAAGCAGTGTGTCG
ATGAGCTTGCGCGCTTGGAGGGATATCACGCATACGTAAATGAAATCCTG
CTCAGTGCAGGGAACGGTGATGCTTTCAATTCGAAGTGTGCCTCGTCATC
CTCTACTGACCCGGAGATTGTAATCGACGACCCCTTCTTACTGTGCAACG
CTGCAGAAAGACTTGTGTTGGAGGCAGTAGCCGGTCGACGGGCGCACCTC
TATCTGCTCGACACCGTGGCGGAAAACGATGGCAAAGTGTATCTTCAGAG
CTGGTTAGTCGATGAAGATGGACAGCGTGAGGTGGCGCGGGTGCCCGTGG
AAGCACGGCGAGAGGAGGACGAGCAGGATCCTGAGAAGGCCTCGGCTGCG
CATGCATTGGTCTGTGCGCTGCAAGAAGAGGAGCCCTTGCTACCGGGGGG
CGCATGCCTAGTCGCAAGAGTTGTGGACCGAGCAGGGCTTGTCTTGGGAG
TGGTGCAGATCATAAAGCGGCAGCGGTCTCTAGGGAGCCAAGACGAAGCA
GATAGCCCTTTCACACAAGCAGATTTAGCAGCCCTGGGCAACGTGCAAGA
CCAGTTGGCATCCACCCTCTTGCTCCTCCGCCTGCTACAAAGGCGGAATC
GGCTGCAAGACAACATGGTAGCCATAGCCGCTCACAACAATATGCTTACC
AGCAGCAACAGTAACGACAACAGCAGAAGCAGCAGTCCGCAGCGGATGCG
TAGCTTGAGAACTTCCCCAGCGGCAGCAGCAACCGCGACGGGAACCGACG
TGTCCACTACATTCTGTCCCACACTCTCCAACGGACGTATGCCCGTCTCA
TCTTTCTGCAAAGTCACGGCACGAGGACGAGAGGCTATCATCAGGGAAGA
GGAGGAAAAGGCAGCAATAGCCGGAGCAACCGCCATAACCAGCCAGATAC
AGCTACAGCAGCAGCACGAAGAAGAAGAAGGATTGAGAGGGAAATACATC
AAGGCCAAGATCTACATTCGTCAACTAGAGAAGGAGCTCAGACAGAAGGT
GAGGGGGCAAGAGCGGGCGTTGCTTGCCCGGCAGGCGAGTGAGGGAGCCA
AACGTATATTTGGCAGGGTGGAAGAAATGGAAGCACTCGTAGCTGAACTC
TCCATAAGGCAAGAGCAGCTAAGATACGAGAATGATGCACTTTCAACAGC
CAAGATACAGGCTGAGTTAGCAGCAAACGCAGCAACAGCCCAAGCCGAGG
CGAAAGCCCGCATGGAAATCGATACGTTGGCTGAGTCTAAAGCACGTGCC
GAGGTGGAATTGCGTGCTCAAATTCGTCAGCTGGAGCGGGAGCAAGAAAC
AGTGAAGGCCACAGTGGCCCGATTGAAAGCGGAGGCGAAGGCGTCAGAGG
TGGAAAGGGAGCAGATGCGGCATGATATGCGGCGATGCCAAAAAAAGCTG
GAGAAGAGCCAGAACGCTGTGAAGGACGCGCGAGTGTATCAAGAAATTAC
CCAAGCGGAGCTCTTGGATTTGAAGGAAAGTCTGCAGCGCATGGAAGCCG
GGACGAACGATTTGCGTCAACAGCTGTTATGTCAGGAAGGGGAGGGAGAG
GGTGGGAGGCCGAGGGTTTTGTAA

Coding sequence (CDS) from alignment at scaffold_6:737966..739639-

>mRNA_3598 ID=mRNA_3598|Name=jgi.p|Nanoce1779_2|564511|organism=Nannochloropsis oceanica|type=CDS|length=1674bp|location=Sequence derived from alignment at scaffold_6:737966..739639- (Nannochloropsis oceanica)
ATGCATGAGCTGTCGACCCTATGGCAATTCGAGCGGGACACCTGCAAAGT
GCTGCAAGAGAGCCTCGATGAGCGGGAGGCAGACCTAAAGCAGTGTGTCG
ATGAGCTTGCGCGCTTGGAGGGATATCACGCATACGTAAATGAAATCCTG
CTCAGTGCAGGGAACGGTGATGCTTTCAATTCGAAGTGTGCCTCGTCATC
CTCTACTGACCCGGAGATTGTAATCGACGACCCCTTCTTACTGTGCAACG
CTGCAGAAAGACTTGTGTTGGAGGCAGTAGCCGGTCGACGGGCGCACCTC
TATCTGCTCGACACCGTGGCGGAAAACGATGGCAAAGTGTATCTTCAGAG
CTGGTTAGTCGATGAAGATGGACAGCGTGAGGTGGCGCGGGTGCCCGTGG
AAGCACGGCGAGAGGAGGACGAGCAGGATCCTGAGAAGGCCTCGGCTGCG
CATGCATTGGTCTGTGCGCTGCAAGAAGAGGAGCCCTTGCTACCGGGGGG
CGCATGCCTAGTCGCAAGAGTTGTGGACCGAGCAGGGCTTGTCTTGGGAG
TGGTGCAGATCATAAAGCGGCAGCGGTCTCTAGGGAGCCAAGACGAAGCA
GATAGCCCTTTCACACAAGCAGATTTAGCAGCCCTGGGCAACGTGCAAGA
CCAGTTGGCATCCACCCTCTTGCTCCTCCGCCTGCTACAAAGGCGGAATC
GGCTGCAAGACAACATGGTAGCCATAGCCGCTCACAACAATATGCTTACC
AGCAGCAACAGTAACGACAACAGCAGAAGCAGCAGTCCGCAGCGGATGCG
TAGCTTGAGAACTTCCCCAGCGGCAGCAGCAACCGCGACGGGAACCGACG
TGTCCACTACATTCTGTCCCACACTCTCCAACGGACGTATGCCCGTCTCA
TCTTTCTGCAAAGTCACGGCACGAGGACGAGAGGCTATCATCAGGGAAGA
GGAGGAAAAGGCAGCAATAGCCGGAGCAACCGCCATAACCAGCCAGATAC
AGCTACAGCAGCAGCACGAAGAAGAAGAAGGATTGAGAGGGAAATACATC
AAGGCCAAGATCTACATTCGTCAACTAGAGAAGGAGCTCAGACAGAAGGT
GAGGGGGCAAGAGCGGGCGTTGCTTGCCCGGCAGGCGAGTGAGGGAGCCA
AACGTATATTTGGCAGGGTGGAAGAAATGGAAGCACTCGTAGCTGAACTC
TCCATAAGGCAAGAGCAGCTAAGATACGAGAATGATGCACTTTCAACAGC
CAAGATACAGGCTGAGTTAGCAGCAAACGCAGCAACAGCCCAAGCCGAGG
CGAAAGCCCGCATGGAAATCGATACGTTGGCTGAGTCTAAAGCACGTGCC
GAGGTGGAATTGCGTGCTCAAATTCGTCAGCTGGAGCGGGAGCAAGAAAC
AGTGAAGGCCACAGTGGCCCGATTGAAAGCGGAGGCGAAGGCGTCAGAGG
TGGAAAGGGAGCAGATGCGGCATGATATGCGGCGATGCCAAAAAAAGCTG
GAGAAGAGCCAGAACGCTGTGAAGGACGCGCGAGTGTATCAAGAAATTAC
CCAAGCGGAGCTCTTGGATTTGAAGGAAAGTCTGCAGCGCATGGAAGCCG
GGACGAACGATTTGCGTCAACAGCTGTTATGTCAGGAAGGGGAGGGAGAG
GGTGGGAGGCCGAGGGTTTTGTAA

Synonyms

Publications