Properties
| Property Name | Value |
|---|
| TranscriptId | 582813 |
| Track | FilteredModels2 |
| ProteinId | 582727 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:735307..736713 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3597 ID=mRNA_3597|Name=jgi.p|Nanoce1779_2|582727|organism=Nannochloropsis oceanica|type=mRNA|length=976bp
AGCAGCAGCAGCAGCAGCAGCAGCGCTATCAACAACAACAACTACAGCAG
CAGCAAGATCAAAAAGGAGAACGAGGGCCAGGACGAGGAGGGGGGGGTGG
GGGGGCAGCCGCGGGCCCTTCAGCCCTTGTACAGACGCCAATGGGGCTCA
TGAAAGTCCAGTTAGTAGGGAACAATGAAACCGAGAATCTTCCTCTAGTC
GGACAAATGAGTTTCGACCCATCTCTCTTTCAAAATGCGCTTCAGCAGCA
ACCACAGCCACAAATACTACTCCAACCGCAACCGCTGCAGCAGCAGCACC
ATCAACAGCAGCACCATCAACCACCACCACCACCACCACAACAACAACAA
CAATACTACGGTCATCCTGATACTGCTGCTTCTGGTGTTTTTGTGCTTCC
CCCTATGCTGGCTACTACTCAACATGTGGACCACATTGAGAGCTTGCTGC
GACAGGACAGGTCAGGATCGTATTGGAGTTCAGTGGAGGAAGGTCGTCTT
CTGGAAGCGCTTCGGCTGTACGAAACCACAAATTTCACCAAGATCGCACA
GCACGTAGGCACCAAATCCAAGACCCAAGTCCGCAATCGCCTGAAGCATC
ACCCGCAAGGTAGAGGCGCTGCACCTCTTCCTCCTCATTTTCCTCCCCCT
CTTCCTCCTACCTTGACACCAGAGGCGGTTGCCACGGCTGCTGTGCTGAT
GCCTCCGCCGGCCCCACGTTCGACGAGTGTGAATGGCCGTTAGCAGCAGC
ACCACCAGCACCAGCAGCTCCATTGAGGCTGAGTGTTTAGGAATGGGCGG
TCATTTCGGAAGAGGCGGAGAAATTATTTTGAGAATGTATGAGAGAGGAA
AAGGAGAAGTGGAAGGTGAAAGAAAAGGAAACACGTGTAAACATTTTCGT
CATGTAAATAATCATACTTACATCAAACAAAGACCGAGAGCCTCTCAAAG
ACGTCACGGAAGAAGCACTGCAAACG back to topprotein sequence of jgi.p|Nanoce1779_2|582727 >mRNA_3597-protein ID=mRNA_3597-protein|Name=jgi.p|Nanoce1779_2|582727|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MGLMKVQLVGNNETENLPLVGQMSFDPSLFQNALQQQPQPQILLQPQPLQ
QQHHQQQHHQPPPPPPQQQQQYYGHPDTAASGVFVLPPMLATTQHVDHIE
SLLRQDRSGSYWSSVEEGRLLEALRLYETTNFTKIAQHVGTKSKTQVRNR
LKHHPQGRGAAPLPPHFPPPLPPTLTPEAVATAAVLMPPPAPRSTSVNGR
* back to topmRNA from alignment at scaffold_6:735307..736713- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3597 ID=mRNA_3597|Name=jgi.p|Nanoce1779_2|582727|organism=Nannochloropsis oceanica|type=mRNA|length=1407bp|location=Sequence derived from alignment at scaffold_6:735307..736713- (Nannochloropsis oceanica)
AGCAGCAGCAGCAGCAGCAGCAGCGCTATCAACAACAACAACTACAGCAG
CAGCAAGATCAAAAAGGAGAACGAGGGCCAGGACGAGGAGGGGGGGGTGG
GGGGGCAGCCGCGGGCCCTTCAGCCCTTGTACAGACGCCAATGGGGCTCA
TGAAAGTCCAGTTAGTAGGGAACAATGAAACCGAGAATCTTCCTCTAGTC
GGACAAATGAGTTTCGACCCATCTCTCTTTCAAAATGCGCTTCAGCAGCA
ACCACAGCCACAAATACTACTCCAACCGCAACCGCTGCAGCAGCAGCACC
ATCAACAGCAGCACCATCAACCACCACCACCACCACCACAACAACAACAA
CAATACTACGGTCATCCTGATACTGCTGCTTCTGGTGTTTTTGTGCTTCC
CCCTATGCTGGCTACTACTCAACATGTGGACCACATTGAGAGCTGTAAGT
CGGGATGGGATGGACCTCAGGGAGCCAGTAAAGGGGGAACAGGAAGACGG
GGAAGAAGGGAAGGAGGGTGGGAGGTTTCTGCACTCGTATTTGAAGCTCC
TTTTAAAAAACTATTTTTTAATGTCATAGGCTTTGGCGGTATGTGTTCTC
TCCCCTCCAAGGGATTCGATTCCCAACTCTAAGCCTCCTCCCTCTCATCC
TCGGCCCCTGCCTTTACTCATGGAAACAAACAACAGTGCTGCGACAGGAC
AGGTCAGGATCGTATTGGAGTTCAGTGGAGGAAGGTCGTCTTCTGGAAGC
GCTTCGGCTGTACGAAACCACAAGTAAGTTGCGTAGCCTTAGAAGCAGAC
AGACAAAGACCAAAAATTCCTCGTCCTTCTGCGTTTCTCCACTTCACTTC
ACCTCACATAAGGAAAAATATGTGATTTTTTTCCTTTCCTCCCTCTCATA
GTACTTTCAATTCTATCTTCCTCCTTTTCCTTTTTCCTTTCCTCCCTCCT
TGCTTCCAACAGATTTCACCAAGATCGCACAGCACGTAGGCACCAAATCC
AAGACCCAAGTCCGCAATCGCCTGAAGCATCACCCGCAAGGTAGAGGCGC
TGCACCTCTTCCTCCTCATTTTCCTCCCCCTCTTCCTCCTACCTTGACAC
CAGAGGCGGTTGCCACGGCTGCTGTGCTGATGCCTCCGCCGGCCCCACGT
TCGACGAGTGTGAATGGCCGTTAGCAGCAGCACCACCAGCACCAGCAGCT
CCATTGAGGCTGAGTGTTTAGGAATGGGCGGTCATTTCGGAAGAGGCGGA
GAAATTATTTTGAGAATGTATGAGAGAGGAAAAGGAGAAGTGGAAGGTGA
AAGAAAAGGAAACACGTGTAAACATTTTCGTCATGTAAATAATCATACTT
ACATCAAACAAAGACCGAGAGCCTCTCAAAGACGTCACGGAAGAAGCACT
GCAAACG back to topCoding sequence (CDS) from alignment at scaffold_6:735307..736713- >mRNA_3597 ID=mRNA_3597|Name=jgi.p|Nanoce1779_2|582727|organism=Nannochloropsis oceanica|type=CDS|length=1809bp|location=Sequence derived from alignment at scaffold_6:735307..736713- (Nannochloropsis oceanica)
ATTTCACCAAGATCGCACAGCACGTAGGCACCAAATCCAAGACCCAAGTC
CGCAATCGCCTGAAGCATCACCCGCAAGGTAGAGGCGCTGCACCTCTTCC
TCCTCATTTTCCTCCCCCTCTTCCTCCTACCTTGACACCAGAGGCGGTTG
CCACGGCTGCTGTGCTGATGCCTCCGCCGGCCCCACGTTCGACGAGTGTG
AATGGCCGTTAGTGCTGCGACAGGACAGGTCAGGATCGTATTGGAGTTCA
GTGGAGGAAGGTCGTCTTCTGGAAGCGCTTCGGCTGTACGAAACCACAAA
TGGGGCTCATGAAAGTCCAGTTAGTAGGGAACAATGAAACCGAGAATCTT
CCTCTAGTCGGACAAATGAGTTTCGACCCATCTCTCTTTCAAAATGCGCT
TCAGCAGCAACCACAGCCACAAATACTACTCCAACCGCAACCGCTGCAGC
AGCAGCACCATCAACAGCAGCACCATCAACCACCACCACCACCACCACAA
CAACAACAACAATACTACGGTCATCCTGATACTGCTGCTTCTGGTGTTTT
TGTGCTTCCCCCTATGCTGGCTACTACTCAACATGTGGACCACATTGAGA
GCTATTTCACCAAGATCGCACAGCACGTAGGCACCAAATCCAAGACCCAA
GTCCGCAATCGCCTGAAGCATCACCCGCAAGGTAGAGGCGCTGCACCTCT
TCCTCCTCATTTTCCTCCCCCTCTTCCTCCTACCTTGACACCAGAGGCGG
TTGCCACGGCTGCTGTGCTGATGCCTCCGCCGGCCCCACGTTCGACGAGT
GTGAATGGCCGTTAGTGCTGCGACAGGACAGGTCAGGATCGTATTGGAGT
TCAGTGGAGGAAGGTCGTCTTCTGGAAGCGCTTCGGCTGTACGAAACCAC
AAATGGGGCTCATGAAAGTCCAGTTAGTAGGGAACAATGAAACCGAGAAT
CTTCCTCTAGTCGGACAAATGAGTTTCGACCCATCTCTCTTTCAAAATGC
GCTTCAGCAGCAACCACAGCCACAAATACTACTCCAACCGCAACCGCTGC
AGCAGCAGCACCATCAACAGCAGCACCATCAACCACCACCACCACCACCA
CAACAACAACAACAATACTACGGTCATCCTGATACTGCTGCTTCTGGTGT
TTTTGTGCTTCCCCCTATGCTGGCTACTACTCAACATGTGGACCACATTG
AGAGCTATTTCACCAAGATCGCACAGCACGTAGGCACCAAATCCAAGACC
CAAGTCCGCAATCGCCTGAAGCATCACCCGCAAGGTAGAGGCGCTGCACC
TCTTCCTCCTCATTTTCCTCCCCCTCTTCCTCCTACCTTGACACCAGAGG
CGGTTGCCACGGCTGCTGTGCTGATGCCTCCGCCGGCCCCACGTTCGACG
AGTGTGAATGGCCGTTAGTGCTGCGACAGGACAGGTCAGGATCGTATTGG
AGTTCAGTGGAGGAAGGTCGTCTTCTGGAAGCGCTTCGGCTGTACGAAAC
CACAAATGGGGCTCATGAAAGTCCAGTTAGTAGGGAACAATGAAACCGAG
AATCTTCCTCTAGTCGGACAAATGAGTTTCGACCCATCTCTCTTTCAAAA
TGCGCTTCAGCAGCAACCACAGCCACAAATACTACTCCAACCGCAACCGC
TGCAGCAGCAGCACCATCAACAGCAGCACCATCAACCACCACCACCACCA
CCACAACAACAACAACAATACTACGGTCATCCTGATACTGCTGCTTCTGG
TGTTTTTGTGCTTCCCCCTATGCTGGCTACTACTCAACATGTGGACCACA
TTGAGAGCT back to top
|