jgi.p|Nanoce1779_2|582711, mRNA_3593 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582711
Unique Name	mRNA_3593
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	932
Alignment location	scaffold_6:722964..724727 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582797
Track	FilteredModels2
ProteinId	582711

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:722964..724727 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582711	gene_3593	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582711	mRNA_3593-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3593	CDS_3593	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:722964..724727+
coding sequence from alignment at scaffold_6:722964..724727+

mRNA sequence

>mRNA_3593 ID=mRNA_3593|Name=jgi.p|Nanoce1779_2|582711|organism=Nannochloropsis oceanica|type=mRNA|length=932bp
AGCTATTCCCCGCGCAAAGGCTTTAATCAACGATGCAGACGCGCGTCACC
CGGCTCTTTAAGATCCAATACCCAATTGTCCTCCCAGGCATGTCGTGGAT
CTCAAAGCCTAAACTAGTGGCTGCCGTGTGCAATGCGGGCGGGCTAGGCA
TCCTCGCCTCAGGGCCTCTCTCGGCCGTCGAAACGGCTGTAGCCATCAAG
GAGATCCGCAGCCTCACAGACAAGCCCTTTGGGATTGGCACCACCCTTAT
GATGCCGGGCGCCAAGGAAAACGCGACAGTCGCCTTGGAAGAAGAGGTAC
CCGTCATCAATTACAGCCTGGGCAAGGGAGACTGGCTGGTGCAAAGAGCC
CACGCGTACGGTGGCAAGGTCATCGCAACCGTCACTTCGGTGAAGCATGC
CAAGTCGGCGAAAAGCAGCGGTGCGGATGCCCTCCTTGTAACGGGACACG
AAGCCGCTGCACATGGGGGGGACGTGACCTCCTTGGTATTAATTCCATCC
ATCGCGGCCAATGTACCGGACCTGCCGTTGATCGCTGCAGGGGGATTCGG
AGATGGAAGAGGCTTGCTGGCGGCTTTGTCCTTGGGAGCGGATGCAGTGG
CGATGGGCACCCGATTTGCTTGCACGGAGGAGAGTCCATTGCATGAAAAC
GTGAAGAAGGCCATTACAAGTGATGGTCAAACGGAAAGTAGCACGGTTTA
TTCCAAAAATATCGATGGGATATGGGCAAGGGTGATGAAGACGCCTTTCG
CTGCAGAGGCGGCAAGTAAGCGGGCGAACCCTCTCGTTGTGGCGATCGAG
GCTTTAAAGCAGGCGAAACGGTTCGGTGTCAACCCACTCAAGGTTTTGCC
GGGCCTGTTTATGGAGCCAGATAAAATTTACATGCTGGCGCAGTTTGGAG
GGGCGACGCATTGAAGGTGATTTGGAAAAGGG

protein sequence of jgi.p|Nanoce1779_2|582711

>mRNA_3593-protein ID=mRNA_3593-protein|Name=jgi.p|Nanoce1779_2|582711|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MQTRVTRLFKIQYPIVLPGMSWISKPKLVAAVCNAGGLGILASGPLSAVE
TAVAIKEIRSLTDKPFGIGTTLMMPGAKENATVALEEEVPVINYSLGKGD
WLVQRAHAYGGKVIATVTSVKHAKSAKSSGADALLVTGHEAAAHGGDVTS
LVLIPSIAANVPDLPLIAAGGFGDGRGLLAALSLGADAVAMGTRFACTEE
SPLHENVKKAITSDGQTESSTVYSKNIDGIWARVMKTPFAAEAASKRANP
LVVAIEALKQAKRFGVNPLKVLPGLFMEPDKIYMLAQFGGATH*

mRNA from alignment at scaffold_6:722964..724727+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3593 ID=mRNA_3593|Name=jgi.p|Nanoce1779_2|582711|organism=Nannochloropsis oceanica|type=mRNA|length=1764bp|location=Sequence derived from alignment at scaffold_6:722964..724727+ (Nannochloropsis oceanica)
AGCTATTCCCCGCGCAAAGGCTTTAATCAACGATGCAGACGCGCGTCACC
CGGCTCTTTAAGATCCAATACCCAATTGTCCTCCCAGGCATGTCGTGGAT
CTCAAAGCCTAAACTAGTGGCTGCCGTGTGCAATGCGGGCGGGCTAGGCA
TCCTCGCCTCAGGGCCTCTCTCGGCCGTCGAAACGGCTGTAGCCATCAAG
GAGATCCGCAGCCTCACAGACAAGCCCTTTGGGATTGGCACCACCCTTAT
GATGCCGGTAGGTTTGTTGGCACGAGCGCGACACTACTCTTTCAGTCTAT
CCCTTTCTCCCTTCGACCTCCTTCGTCGGCCCCTCATCCCTTCCTTCAAG
TCTCCATGACTCCATGACGATGTTCTCCTACAAGTCCTTGGAAGGGTTTT
GCACTGTATACCCTTACCCTGCTGTTTTTTGTTGTTTGTTTACCAGCTTT
CGAATATCCTCTCTTTCCTTCAAAACAAAGTCAACATACTTTGACGACAA
TGTCCTCCCTCATGTGCTCACAAAATTTCACATCCTGCCACTGCTCCTTC
CTCTCTCCCAATCCATCATAATGATAGGGCGCCAAGGAAAACGCGACAGT
CGCCTTGGAAGAAGAGGTACCCGTCATCAATTACAGCCTGGGCAAGGGAG
ACTGGCTGGTGCAAAGAGCCCACGCGTACGGTGGCAAGGTCATCGCAACC
GTCACTTCGGTGAAGCATGGTGCGCCTTCCGTGTTGGAGGGGGTGGGAGA
GAGGGAAGGGTGACAGAAGCAACTATATTTCTTTCCCCACAACTTCATCC
CCGATTTCAATATACCCTTTTCAGGAGTTTCAAGTCTTATTTGATCTCTT
GCTCGATTTTCATGCATCGATCACTCCACGTACTCATCCTCTCCTTCCCC
CTCCCTCCCTTTTCCCCAACAGCCAAGTCGGCGAAAAGCAGCGGTGCGGA
TGCCCTCCTTGTAACGGGACACGAAGCCGCTGCACATGGGGGGGACGTGA
CCTCCTTGGTATTAATTCCATCCATCGCGGCCAATGTACCGGACCTGCCG
TTGATCGCTGCAGGGGGATTCGGAGATGGAAGAGGCTTGCTGGCGGCTTT
GTCCTTGGGAGCGGATGCAGTGGCGATGGGCACCCGATTTGCTTGCACGG
AGGAGAGTCCATTGCATGAAAACGTGAAGAAGGCCATTACAAGTGATGGT
CAAACGGAAAGTAGCACGGTTTATTCCAAAAATATCGATGGGATATGGGC
AAGGGTGATGAAGACGCCTTTCGCTGCAGAGGCGGCAAGTAAGCGGGCGA
ACCCTCTCGTTGTGGCGATCGAGGCTTTAAAGCAGGCGAAACGGTTCGGT
GTCAACCCACTCAAGGTTTTGCCGGGCCTGTTTATGGAGCCAGATAAAAT
TTACATGCTGGCGCAGTTTGGAGGGGCGACGCGTAAGTTTGAGCTGGCGA
CGGTGAGTGGGGATGGAGAGGTGGGGAGGGGGAAGAGGGAGTGAGGGGTG
GATGTGGGTGGGTGGATAGAGATGGGTTGGAGCATGACATGCAACATAAT
GTAAGCTGGCGAGCTAGACGATGTGTACCCTCTGTTACAGTGAGAGAGGA
GGTATTGAGGAGGAGAAGAGTAAGTTTTAGGAAGAAATACGTTCCTCATC
CCCCCCTCATTTCCTCTTCATTTTTCAGATCAATTTTTACTAAGCGATCC
CTCACCATCTCACTCTATCTCCTCCCTCCCCCCCTAAATAGATTGAAGGT
GATTTGGAAAAGGG

Coding sequence (CDS) from alignment at scaffold_6:722964..724727+

>mRNA_3593 ID=mRNA_3593|Name=jgi.p|Nanoce1779_2|582711|organism=Nannochloropsis oceanica|type=CDS|length=3528bp|location=Sequence derived from alignment at scaffold_6:722964..724727+ (Nannochloropsis oceanica)
ATGCAGACGCGCGTCACCCGGCTCTTTAAGATCCAATACCCAATTGTCCT
CCCAGGCATGTCGTGGATCTCAAAGCCTAAACTAGTGGCTGCCGTGTGCA
ATGCGGGCGGGCTAGGCATCCTCGCCTCAGGGCCTCTCTCGGCCGTCGAA
ACGGCTGTAGCCATCAAGGAGATCCGCAGCCTCACAGACAAGCCCTTTGG
GATTGGCACCACCCTTATGATGCCGGGCGCCAAGGAAAACGCGACAGTCG
CCTTGGAAGAAGAGGTACCCGTCATCAATTACAGCCTGGGCAAGGGAGAC
TGGCTGGTGCAAAGAGCCCACGCGTACGGTGGCAAGGTCATCGCAACCGT
CACTTCGGTGAAGCATGCCAAGTCGGCGAAAAGCAGCGGTGCGGATGCCC
TCCTTGTAACGGGACACGAAGCCGCTGCACATGGGGGGGACGTGACCTCC
TTGGTATTAATTCCATCCATCGCGGCCAATGTACCGGACCTGCCGTTGAT
CGCTGCAGGGGGATTCGGAGATGGAAGAGGCTTGCTGGCGGCTTTGTCCT
TGGGAGCGGATGCAGTGGCGATGGGCACCCGATTTGCTTGCACGGAGGAG
AGTCCATTGCATGAAAACGTGAAGAAGGCCATTACAAGTGATGGTCAAAC
GGAAAGTAGCACGGTTTATTCCAAAAATATCGATGGGATATGGGCAAGGG
TGATGAAGACGCCTTTCGCTGCAGAGGCGGCAAGTAAGCGGGCGAACCCT
CTCGTTGTGGCGATCGAGGCTTTAAAGCAGGCGAAACGGTTCGGTGTCAA
CCCACTCAAGGTTTTGCCGGGCCTGTTTATGGAGCCAGATAAAATTTACA
TGCTGGCGCAGTTTGGAGGGGCGACGCATTGAATGCAGACGCGCGTCACC
CGGCTCTTTAAGATCCAATACCCAATTGTCCTCCCAGGCATGTCGTGGAT
CTCAAAGCCTAAACTAGTGGCTGCCGTGTGCAATGCGGGCGGGCTAGGCA
TCCTCGCCTCAGGGCCTCTCTCGGCCGTCGAAACGGCTGTAGCCATCAAG
GAGATCCGCAGCCTCACAGACAAGCCCTTTGGGATTGGCACCACCCTTAT
GATGCCGGGCGCCAAGGAAAACGCGACAGTCGCCTTGGAAGAAGAGGTAC
CCGTCATCAATTACAGCCTGGGCAAGGGAGACTGGCTGGTGCAAAGAGCC
CACGCGTACGGTGGCAAGGTCATCGCAACCGTCACTTCGGTGAAGCATGC
CAAGTCGGCGAAAAGCAGCGGTGCGGATGCCCTCCTTGTAACGGGACACG
AAGCCGCTGCACATGGGGGGGACGTGACCTCCTTGGTATTAATTCCATCC
ATCGCGGCCAATGTACCGGACCTGCCGTTGATCGCTGCAGGGGGATTCGG
AGATGGAAGAGGCTTGCTGGCGGCTTTGTCCTTGGGAGCGGATGCAGTGG
CGATGGGCACCCGATTTGCTTGCACGGAGGAGAGTCCATTGCATGAAAAC
GTGAAGAAGGCCATTACAAGTGATGGTCAAACGGAAAGTAGCACGGTTTA
TTCCAAAAATATCGATGGGATATGGGCAAGGGTGATGAAGACGCCTTTCG
CTGCAGAGGCGGCAAGTAAGCGGGCGAACCCTCTCGTTGTGGCGATCGAG
GCTTTAAAGCAGGCGAAACGGTTCGGTGTCAACCCACTCAAGGTTTTGCC
GGGCCTGTTTATGGAGCCAGATAAAATTTACATGCTGGCGCAGTTTGGAG
GGGCGACGCATTGAATGCAGACGCGCGTCACCCGGCTCTTTAAGATCCAA
TACCCAATTGTCCTCCCAGGCATGTCGTGGATCTCAAAGCCTAAACTAGT
GGCTGCCGTGTGCAATGCGGGCGGGCTAGGCATCCTCGCCTCAGGGCCTC
TCTCGGCCGTCGAAACGGCTGTAGCCATCAAGGAGATCCGCAGCCTCACA
GACAAGCCCTTTGGGATTGGCACCACCCTTATGATGCCGGGCGCCAAGGA
AAACGCGACAGTCGCCTTGGAAGAAGAGGTACCCGTCATCAATTACAGCC
TGGGCAAGGGAGACTGGCTGGTGCAAAGAGCCCACGCGTACGGTGGCAAG
GTCATCGCAACCGTCACTTCGGTGAAGCATGCCAAGTCGGCGAAAAGCAG
CGGTGCGGATGCCCTCCTTGTAACGGGACACGAAGCCGCTGCACATGGGG
GGGACGTGACCTCCTTGGTATTAATTCCATCCATCGCGGCCAATGTACCG
GACCTGCCGTTGATCGCTGCAGGGGGATTCGGAGATGGAAGAGGCTTGCT
GGCGGCTTTGTCCTTGGGAGCGGATGCAGTGGCGATGGGCACCCGATTTG
CTTGCACGGAGGAGAGTCCATTGCATGAAAACGTGAAGAAGGCCATTACA
AGTGATGGTCAAACGGAAAGTAGCACGGTTTATTCCAAAAATATCGATGG
GATATGGGCAAGGGTGATGAAGACGCCTTTCGCTGCAGAGGCGGCAAGTA
AGCGGGCGAACCCTCTCGTTGTGGCGATCGAGGCTTTAAAGCAGGCGAAA
CGGTTCGGTGTCAACCCACTCAAGGTTTTGCCGGGCCTGTTTATGGAGCC
AGATAAAATTTACATGCTGGCGCAGTTTGGAGGGGCGACGCATTGAATGC
AGACGCGCGTCACCCGGCTCTTTAAGATCCAATACCCAATTGTCCTCCCA
GGCATGTCGTGGATCTCAAAGCCTAAACTAGTGGCTGCCGTGTGCAATGC
GGGCGGGCTAGGCATCCTCGCCTCAGGGCCTCTCTCGGCCGTCGAAACGG
CTGTAGCCATCAAGGAGATCCGCAGCCTCACAGACAAGCCCTTTGGGATT
GGCACCACCCTTATGATGCCGGGCGCCAAGGAAAACGCGACAGTCGCCTT
GGAAGAAGAGGTACCCGTCATCAATTACAGCCTGGGCAAGGGAGACTGGC
TGGTGCAAAGAGCCCACGCGTACGGTGGCAAGGTCATCGCAACCGTCACT
TCGGTGAAGCATGCCAAGTCGGCGAAAAGCAGCGGTGCGGATGCCCTCCT
TGTAACGGGACACGAAGCCGCTGCACATGGGGGGGACGTGACCTCCTTGG
TATTAATTCCATCCATCGCGGCCAATGTACCGGACCTGCCGTTGATCGCT
GCAGGGGGATTCGGAGATGGAAGAGGCTTGCTGGCGGCTTTGTCCTTGGG
AGCGGATGCAGTGGCGATGGGCACCCGATTTGCTTGCACGGAGGAGAGTC
CATTGCATGAAAACGTGAAGAAGGCCATTACAAGTGATGGTCAAACGGAA
AGTAGCACGGTTTATTCCAAAAATATCGATGGGATATGGGCAAGGGTGAT
GAAGACGCCTTTCGCTGCAGAGGCGGCAAGTAAGCGGGCGAACCCTCTCG
TTGTGGCGATCGAGGCTTTAAAGCAGGCGAAACGGTTCGGTGTCAACCCA
CTCAAGGTTTTGCCGGGCCTGTTTATGGAGCCAGATAAAATTTACATGCT
GGCGCAGTTTGGAGGGGCGACGCATTGA

Synonyms

Publications