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Properties
| Property Name | Value |
|---|
| TranscriptId | 582793 |
| Track | FilteredModels2 |
| ProteinId | 582707 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:718747..721870 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3592 ID=mRNA_3592|Name=jgi.p|Nanoce1779_2|582707|organism=Nannochloropsis oceanica|type=mRNA|length=2427bp
AACAGTGAAAAGAGCCAAGGGCGCCGGTGGCAGTGGGGGGGAAGCACGCA
CACACTCCCGACGCTATCGCTAGGCAGCAGCAGAGGCAAGGCCCGCTACT
TCACACCTCAACACTGTAGCAACGGCGGCGGCCGGAATGGATTTCGGGGA
AGATGCATCCGGATATGCAAACATGGATGCGGCAAACTTTTGGTATCAAC
TGGTCGGGGCCGTGGTCTGCGTACTGTGCGCAGCTTTTGCCGCAGGCCTC
ACGGTGGGGCTCATGTCGCTGGACCCTTTGGAGCTGGAGGTGAAGCGGCG
GGTTGGTACGCCAGATGAACGAAAACACGCTGAGAAAATTTGTCCACTTA
TTGCGCGGCACCATCGTCTGCTTGTGACCCTCCTGCTATTTAATTCCATC
GCCAACGAAGCCCTCCCCATCTTCTTGTCGGGACTGGTGCCTGGTTACGT
CGCTGTGCTTCTTTCCGTCACGGCCATCCTCATTTTTGGTGAGATCATCC
CCTCAGCGCTCTTTACGGGGCCGAACCAAATCGTAATGGCCGCGCGCTTC
TCGGGCTGTGTCCTTTTCCTGATGGGGCTCTTCTGGCCCATCGCCTACCC
GATTGCCCACGTCCTAGACAGGTGGCTGGGGCACAATTCCTTCAAGCGCT
ACACGCGAGAGGAGCTCTCGACGTTGGTAGACCTGCAGCGGGAAGCGGGC
ACGATCAAGCACAGACGGCCACCGGGGACTCCGGGTGGAGGGGTAGGGAC
CGGAATTTACGCCCATTCGGCGAAGGAGAAAGAGCTCGGAGAGAGCATGC
GGGCCATCACCGTTGACGAGGCGACGATCGTGGCAGGTGTGCTGAAGTGC
CATGCGAAGAAGATTTGTGACGCCTTGAAACCGATGGATGAGGTGTACAC
TCTTTGTGAAGATGATGTGCTGGACGAAAACATGCTCTGCGAGATCATGG
CCTGTGGCTTCTCCCGCATTCCCGTGCACAGCGCGCGAGGCAGGCAAGAT
ATCCGCGGCTTCCTTCTGGTCAAGCGTCTAATTGTACTAGATCCCGCCGA
CCGCCGCCCCGTTCGCACCTTGCCGTTGCGCCAGCCTATCGTGGTGGGCC
CCACCGGGTCGCTGCTTGAGCTGATTAATGTCTTCCAGGAGGGCAGGAGC
CACATGGCTATCGTTTCATCATGTCCTGATTTGACAAGACAGGCCCTTCG
GACGGGCAAGCCGCTGGAAGGACGGATCGCACCGATTGGAATCATAACGC
TGGAGGACTTGTTCGAAGAAATTCTGCAGGAGGAGATTTATGACGAGCAT
GACGACCGGGAACGAAAAGCCATCGAGACTCTCAAACGTGTGCGACGGAA
GGTTCGCCGCCTCCGACAGCAACAGCAGGAAGAATTGGAAAGCGGACATC
ATAAAGCGATCAGCGTCGCCAGTAGTACCAGCAGCGGCCTCTCCAACCAG
TCGCCCACTTCCTCTCCAACCTCGACACTTTCCGGTAGCGCACTCTCCCC
CACCACCACTGCTGCATTCCTTCTCCTCAACAGTGGCGTGCCCAACTCTT
CCTCCGCCTTGGGCGAGGCACACACCGCCCCTGCTTCGGACGACCCCACC
ACTACCCTTCTTTCGAGCAGGCCAAAAAGTAATATAATACAGCCATCATC
GAGTAAGAAGACAAATGGCGGTAACATCACCGGCAGCAGTAGTAGGAACA
GTAAGAAAAAGACGACGAAGCGACAGCAGGCCGGGTCGTCTACGCTGGGT
AACGGCAACGTCAAGGGGCATGGCCAGCCACCTTCTTCCTACGGTAGTAC
AGATGCCACTGACTCGCCTGTGTAGGTTGAAGAAGTAGCGAGGCGATGGA
TATTTGCATGTGGGTGAGTGTTAGTGTGAGTGTGAGTGTGTGTGCTGTGC
GGGTGAGGATCCCTCCGGTGAGTAAAATGGCGGCGATAGTGAGTGCCAAC
TCATGAGTGATTACCGTAGGGCTATATCTGTTTAAAAAGATTCAATGTTG
CCCGCGGAGAAGTCGTTGTCACTAATGGAGGAGGATGATTGATAGCAAGA
TTGAGGAGACAGAACTGAGAGAGGAGTGTTGGCCCCTTAACGGGGAGCAC
ATTTAGATATTGCAGGTTCTGGGTCGATGATGAGGTAAGAAAGAAGAAAA
TGCGAAGTCAAATGTCGATGGAAGCTATAGGTTGCGATATATGTAAACGG
GAGAAATGCTTGGCGAGAGGCACGAAGCCCCAGTGGTGGCCGAAGGGATG
TAGACAAAAAACGAATAGCAGGGGGGGGGAAAATGGTTTTTGACCCACTC
CTTGAAGAAACCCCGATTGCCAATCACCGCAAAGGGATAAGTATAACAGC
AGCACCAACTTAAAACATGATTTAATCAGGAATAAAATGAGGTCGAGCAA
AGCAACCATTTGTTCCCAAACAGAAGG back to topprotein sequence of jgi.p|Nanoce1779_2|582707 >mRNA_3592-protein ID=mRNA_3592-protein|Name=jgi.p|Nanoce1779_2|582707|organism=Nannochloropsis oceanica|type=polypeptide|length=563bp
MDFGEDASGYANMDAANFWYQLVGAVVCVLCAAFAAGLTVGLMSLDPLEL
EVKRRVGTPDERKHAEKICPLIARHHRLLVTLLLFNSIANEALPIFLSGL
VPGYVAVLLSVTAILIFGEIIPSALFTGPNQIVMAARFSGCVLFLMGLFW
PIAYPIAHVLDRWLGHNSFKRYTREELSTLVDLQREAGTIKHRRPPGTPG
GGVGTGIYAHSAKEKELGESMRAITVDEATIVAGVLKCHAKKICDALKPM
DEVYTLCEDDVLDENMLCEIMACGFSRIPVHSARGRQDIRGFLLVKRLIV
LDPADRRPVRTLPLRQPIVVGPTGSLLELINVFQEGRSHMAIVSSCPDLT
RQALRTGKPLEGRIAPIGIITLEDLFEEILQEEIYDEHDDRERKAIETLK
RVRRKVRRLRQQQQEELESGHHKAISVASSTSSGLSNQSPTSSPTSTLSG
SALSPTTTAAFLLLNSGVPNSSSALGEAHTAPASDDPTTTLLSSRPKSNI
IQPSSSKKTNGGNITGSSSRNSKKKTTKRQQAGSSTLGNGNVKGHGQPPS
SYGSTDATDSPV* back to topmRNA from alignment at scaffold_6:718747..721870+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3592 ID=mRNA_3592|Name=jgi.p|Nanoce1779_2|582707|organism=Nannochloropsis oceanica|type=mRNA|length=3124bp|location=Sequence derived from alignment at scaffold_6:718747..721870+ (Nannochloropsis oceanica)
AACAGTGAAAAGAGCCAAGGGCGCCGGTGGCAGTGGGGGGGAAGCACGCA
CACACTCCCGACGCTATCGCTAGGCAGCAGCAGAGGCAAGGTACGTGTCC
TGGACAGGTGTGGGGTGTGGTGGACTGGATAACTAGTCCTCTTCCCCGCC
CTCGTTGAAGTGTTCACATGTGAACTGACATGCACACCGACTGGATTCAC
TCCAGTCGCATGCATCATGCACGGTCTCGGCAGGACGGCATGTGCGTTCG
CTTTTGTTTCAAATGCTTTTTATGGAATAAGTGCATGTGTCTCTCTGTCT
CTCTGTCTCTCAGTCTATGTCTGAGTCTCTGTCTGTGTCTCCATGTCTCC
GTCCGGGTCTCTGTGTCTCTGTTTCTTTTTGCGTGTGAGGCTGTCTGGAT
GTGTTTGCGTCCGAGTGTAAGTGTGTGTGTTGTATCTGTGCGTATTTTTG
TCTGTGTCTGTGTCTGTGTGTGTATCTGTGTGTCTGTCTGAATATGTGTC
TCGGTGCATCTGTAGGTGCATATAATTGTGCGTGGCTACTGGACTTGCAC
CCACAGCTGGCTCGCAGCCAACCACTCAAATGCATTCTGCAAGTTGCCAC
AGATCTCACTGGCTCCACATTCTTTGCACACAGGCCCGCTACTTCACACC
TCAACACTGTAGCAACGGCGGCGGCCGGAATGGATTTCGGGGAAGATGCA
TCCGGATATGCAAACATGGATGCGGCAAACTTTTGGTATCAACTGGTCGG
GGCCGTGGTCTGCGTACTGTGCGCAGCTTTTGCCGCAGGCCTCACGGTGG
GGCTCATGTCGCTGGACCCTTTGGAGCTGGAGGTGAAGCGGCGGGTTGGT
ACGCCAGATGAACGAAAACACGCTGAGAAAATTTGTCCACTTATTGCGCG
GCACCATCGTCTGCTTGTGACCCTCCTGCTATTTAATTCCATCGCCAACG
AAGCCCTCCCCATCTTCTTGTCGGGACTGGTGCCTGGTTACGTCGCTGTG
CTTCTTTCCGTCACGGCCATCCTCATTTTTGGTGAGATCATCCCCTCAGC
GCTCTTTACGGGGCCGAACCAAATCGTAATGGCCGCGCGCTTCTCGGGCT
GTGTCCTTTTCCTGATGGGGCTCTTCTGGCCCATCGCCTACCCGATTGCC
CACGTCCTAGACAGGTGGCTGGGGCACAATTCCTTCAAGCGCTACACGCG
AGAGGAGCTCTCGACGTTGGTAGACCTGCAGCGGGAAGCGGGCACGATCA
AGCACAGACGGCCACCGGGGACTCCGGGTGGAGGGGTAGGGACCGGAATT
TACGCCCATTCGGCGAAGGAGAAAGAGCTCGGAGAGAGCATGCGGGCCAT
CACCGTTGACGAGGCGACGATCGTGGCAGGTGTGCTGAAGTGCCATGCGA
AGAAGATTTGTGACGCCTTGAAACCGATGGATGAGGTGTACACTCTTTGT
GAAGATGATGTGCTGGACGAAAACATGCTCTGCGAGATCATGGCCTGTGG
CTTCTCCCGCATTCCCGTGCACAGCGCGCGAGGCAGGCAAGATATCCGCG
GCTTCCTTCTGGTCAAGCGTCTAATTGTACTAGATCCCGCCGACCGCCGC
CCCGTTCGCACCTTGCCGTTGCGCCAGCCTATCGTGGTGGGCCCCACCGG
GTCGCTGCTTGAGCTGATTAATGTCTTCCAGGAGGGCAGGAGCCACATGG
CTATCGTTTCATCATGTCCTGATTTGACAAGACAGGCCCTTCGGACGGGC
AAGCCGCTGGAAGGACGGATCGCACCGATTGGAATCATAACGCTGGAGGA
CTTGTTCGAAGAAATTCTGCAGGAGGAGATTTATGACGAGCATGACGACC
GGGTATGTGGATTTTTTGTGCTTGCTGGGATGACCCTTTCTTCTCCTTTT
CATGCTGTCCCCCTGTTTCCCCCCCCCCCCCCTTTTTAAAGATATTGCAT
TGAATCGCCCAGTCTTTGATTCCTTTCTTTTTTTAATATTTTCTCGACTA
CTCTAGGAACGAAAAGCCATCGAGACTCTCAAACGTGTGCGACGGAAGGT
TCGCCGCCTCCGACAGCAACAGCAGGAAGAATTGGAAAGCGGACATCATA
AAGCGATCAGCGTCGCCAGTAGTACCAGCAGCGGCCTCTCCAACCAGTCG
CCCACTTCCTCTCCAACCTCGACACTTTCCGGTAGCGCACTCTCCCCCAC
CACCACTGCTGCATTCCTTCTCCTCAACAGTGGCGTGCCCAACTCTTCCT
CCGCCTTGGGCGAGGCACACACCGCCCCTGCTTCGGACGACCCCACCACT
ACCCTTCTTTCGAGCAGGCCAAAAAGTAATATAATACAGCCATCATCGAG
TAAGAAGACAAATGGCGGTAACATCACCGGCAGCAGTAGTAGGAACAGTA
AGAAAAAGACGACGAAGCGACAGCAGGCCGGGTCGTCTACGCTGGGTAAC
GGCAACGTCAAGGGGCATGGCCAGCCACCTTCTTCCTACGGTAGTACAGA
TGCCACTGACTCGCCTGTGTAGGTTGAAGAAGTAGCGAGGCGATGGATAT
TTGCATGTGGGTGAGTGTTAGTGTGAGTGTGAGTGTGTGTGCTGTGCGGG
TGAGGATCCCTCCGGTGAGTAAAATGGCGGCGATAGTGAGTGCCAACTCA
TGAGTGATTACCGTAGGGCTATATCTGTTTAAAAAGATTCAATGTTGCCC
GCGGAGAAGTCGTTGTCACTAATGGAGGAGGATGATTGATAGCAAGATTG
AGGAGACAGAACTGAGAGAGGAGTGTTGGCCCCTTAACGGGGAGCACATT
TAGATATTGCAGGTTCTGGGTCGATGATGAGGTAAGAAAGAAGAAAATGC
GAAGTCAAATGTCGATGGAAGCTATAGGTTGCGATATATGTAAACGGGAG
AAATGCTTGGCGAGAGGCACGAAGCCCCAGTGGTGGCCGAAGGGATGTAG
ACAAAAAACGAATAGCAGGGGGGGGGAAAATGGTTTTTGACCCACTCCTT
GAAGAAACCCCGATTGCCAATCACCGCAAAGGGATAAGTATAACAGCAGC
ACCAACTTAAAACATGATTTAATCAGGAATAAAATGAGGTCGAGCAAAGC
AACCATTTGTTCCCAAACAGAAGG back to topCoding sequence (CDS) from alignment at scaffold_6:718747..721870+ >mRNA_3592 ID=mRNA_3592|Name=jgi.p|Nanoce1779_2|582707|organism=Nannochloropsis oceanica|type=CDS|length=3378bp|location=Sequence derived from alignment at scaffold_6:718747..721870+ (Nannochloropsis oceanica)
ATGGATTTCGGGGAAGATGCATCCGGATATGCAAACATGGATGCGGCAAA
CTTTTGGTATCAACTGGTCGGGGCCGTGGTCTGCGTACTGTGCGCAGCTT
TTGCCGCAGGCCTCACGGTGGGGCTCATGTCGCTGGACCCTTTGGAGCTG
GAGGTGAAGCGGCGGGTTGGTACGCCAGATGAACGAAAACACGCTGAGAA
AATTTGTCCACTTATTGCGCGGCACCATCGTCTGCTTGTGACCCTCCTGC
TATTTAATTCCATCGCCAACGAAGCCCTCCCCATCTTCTTGTCGGGACTG
GTGCCTGGTTACGTCGCTGTGCTTCTTTCCGTCACGGCCATCCTCATTTT
TGGTGAGATCATCCCCTCAGCGCTCTTTACGGGGCCGAACCAAATCGTAA
TGGCCGCGCGCTTCTCGGGCTGTGTCCTTTTCCTGATGGGGCTCTTCTGG
CCCATCGCCTACCCGATTGCCCACGTCCTAGACAGGTGGCTGGGGCACAA
TTCCTTCAAGCGCTACACGCGAGAGGAGCTCTCGACGTTGGTAGACCTGC
AGCGGGAAGCGGGCACGATCAAGCACAGACGGCCACCGGGGACTCCGGGT
GGAGGGGTAGGGACCGGAATTTACGCCCATTCGGCGAAGGAGAAAGAGCT
CGGAGAGAGCATGCGGGCCATCACCGTTGACGAGGCGACGATCGTGGCAG
GTGTGCTGAAGTGCCATGCGAAGAAGATTTGTGACGCCTTGAAACCGATG
GATGAGGTGTACACTCTTTGTGAAGATGATGTGCTGGACGAAAACATGCT
CTGCGAGATCATGGCCTGTGGCTTCTCCCGCATTCCCGTGCACAGCGCGC
GAGGCAGGCAAGATATCCGCGGCTTCCTTCTGGTCAAGCGTCTAATTGTA
CTAGATCCCGCCGACCGCCGCCCCGTTCGCACCTTGCCGTTGCGCCAGCC
TATCGTGGTGGGCCCCACCGGGTCGCTGCTTGAGCTGATTAATGTCTTCC
AGGAGGGCAGGAGCCACATGGCTATCGTTTCATCATGTCCTGATTTGACA
AGACAGGCCCTTCGGACGGGCAAGCCGCTGGAAGGACGGATCGCACCGAT
TGGAATCATAACGCTGGAGGACTTGTTCGAAGAAATTCTGCAGGAGGAGA
TTTATGACGAGCATGACGACCGGGAACGAAAAGCCATCGAGACTCTCAAA
CGTGTGCGACGGAAGGTTCGCCGCCTCCGACAGCAACAGCAGGAAGAATT
GGAAAGCGGACATCATAAAGCGATCAGCGTCGCCAGTAGTACCAGCAGCG
GCCTCTCCAACCAGTCGCCCACTTCCTCTCCAACCTCGACACTTTCCGGT
AGCGCACTCTCCCCCACCACCACTGCTGCATTCCTTCTCCTCAACAGTGG
CGTGCCCAACTCTTCCTCCGCCTTGGGCGAGGCACACACCGCCCCTGCTT
CGGACGACCCCACCACTACCCTTCTTTCGAGCAGGCCAAAAAGTAATATA
ATACAGCCATCATCGAGTAAGAAGACAAATGGCGGTAACATCACCGGCAG
CAGTAGTAGGAACAGTAAGAAAAAGACGACGAAGCGACAGCAGGCCGGGT
CGTCTACGCTGGGTAACGGCAACGTCAAGGGGCATGGCCAGCCACCTTCT
TCCTACGGTAGTACAGATGCCACTGACTCGCCTGTGTAGATGGATTTCGG
GGAAGATGCATCCGGATATGCAAACATGGATGCGGCAAACTTTTGGTATC
AACTGGTCGGGGCCGTGGTCTGCGTACTGTGCGCAGCTTTTGCCGCAGGC
CTCACGGTGGGGCTCATGTCGCTGGACCCTTTGGAGCTGGAGGTGAAGCG
GCGGGTTGGTACGCCAGATGAACGAAAACACGCTGAGAAAATTTGTCCAC
TTATTGCGCGGCACCATCGTCTGCTTGTGACCCTCCTGCTATTTAATTCC
ATCGCCAACGAAGCCCTCCCCATCTTCTTGTCGGGACTGGTGCCTGGTTA
CGTCGCTGTGCTTCTTTCCGTCACGGCCATCCTCATTTTTGGTGAGATCA
TCCCCTCAGCGCTCTTTACGGGGCCGAACCAAATCGTAATGGCCGCGCGC
TTCTCGGGCTGTGTCCTTTTCCTGATGGGGCTCTTCTGGCCCATCGCCTA
CCCGATTGCCCACGTCCTAGACAGGTGGCTGGGGCACAATTCCTTCAAGC
GCTACACGCGAGAGGAGCTCTCGACGTTGGTAGACCTGCAGCGGGAAGCG
GGCACGATCAAGCACAGACGGCCACCGGGGACTCCGGGTGGAGGGGTAGG
GACCGGAATTTACGCCCATTCGGCGAAGGAGAAAGAGCTCGGAGAGAGCA
TGCGGGCCATCACCGTTGACGAGGCGACGATCGTGGCAGGTGTGCTGAAG
TGCCATGCGAAGAAGATTTGTGACGCCTTGAAACCGATGGATGAGGTGTA
CACTCTTTGTGAAGATGATGTGCTGGACGAAAACATGCTCTGCGAGATCA
TGGCCTGTGGCTTCTCCCGCATTCCCGTGCACAGCGCGCGAGGCAGGCAA
GATATCCGCGGCTTCCTTCTGGTCAAGCGTCTAATTGTACTAGATCCCGC
CGACCGCCGCCCCGTTCGCACCTTGCCGTTGCGCCAGCCTATCGTGGTGG
GCCCCACCGGGTCGCTGCTTGAGCTGATTAATGTCTTCCAGGAGGGCAGG
AGCCACATGGCTATCGTTTCATCATGTCCTGATTTGACAAGACAGGCCCT
TCGGACGGGCAAGCCGCTGGAAGGACGGATCGCACCGATTGGAATCATAA
CGCTGGAGGACTTGTTCGAAGAAATTCTGCAGGAGGAGATTTATGACGAG
CATGACGACCGGGAACGAAAAGCCATCGAGACTCTCAAACGTGTGCGACG
GAAGGTTCGCCGCCTCCGACAGCAACAGCAGGAAGAATTGGAAAGCGGAC
ATCATAAAGCGATCAGCGTCGCCAGTAGTACCAGCAGCGGCCTCTCCAAC
CAGTCGCCCACTTCCTCTCCAACCTCGACACTTTCCGGTAGCGCACTCTC
CCCCACCACCACTGCTGCATTCCTTCTCCTCAACAGTGGCGTGCCCAACT
CTTCCTCCGCCTTGGGCGAGGCACACACCGCCCCTGCTTCGGACGACCCC
ACCACTACCCTTCTTTCGAGCAGGCCAAAAAGTAATATAATACAGCCATC
ATCGAGTAAGAAGACAAATGGCGGTAACATCACCGGCAGCAGTAGTAGGA
ACAGTAAGAAAAAGACGACGAAGCGACAGCAGGCCGGGTCGTCTACGCTG
GGTAACGGCAACGTCAAGGGGCATGGCCAGCCACCTTCTTCCTACGGTAG
TACAGATGCCACTGACTCGCCTGTGTAG back to top
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