jgi.p|Nanoce1779_2|582708, mRNA_3591 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582708
Unique NamemRNA_3591
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length432
Alignment locationscaffold_6:718814..719245 +

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Properties
Property NameValue
TranscriptId582794
TrackFilteredModels2
ProteinId582708
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:718814..719245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582708gene_3591Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582708mRNA_3591-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3591CDS_3591Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3591 ID=mRNA_3591|Name=jgi.p|Nanoce1779_2|582708|organism=Nannochloropsis oceanica|type=mRNA|length=432bp
CGCTAGGCAGCAGCAGAGGCAAGGTACGTGTCCTGGACAGGTGTGGGGTG
TGGTGGACTGGATAACTAGTCCTCTTCCCCGCCCTCGTTGAAGTGTTCAC
ATGTGAACTGACATGCACACCGACTGGATTCACTCCAGTCGCATGCATCA
TGCACGGTCTCGGCAGGACGGCATGTGCGTTCGCTTTTGTTTCAAATGCT
TTTTATGGAATAAGTGCATGTGTCTCTCTGTCTCTCTGTCTCTCAGTCTA
TGTCTGAGTCTCTGTCTGTGTCTCCATGTCTCCGTCCGGGTCTCTGTGTC
TCTGTTTCTTTTTGCGTGTGAGGCTGTCTGGATGTGTTTGCGTCCGAGTG
TAAGTGTGTGTGTTGTATCTGTGCGTATTTTTGTCTGTGTCTGTGTCTGT
GTGTGTATCTGTGTGTCTGTCTGAATATGTGT
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protein sequence of jgi.p|Nanoce1779_2|582708

>mRNA_3591-protein ID=mRNA_3591-protein|Name=jgi.p|Nanoce1779_2|582708|organism=Nannochloropsis oceanica|type=polypeptide|length=104bp
MHTDWIHSSRMHHARSRQDGMCVRFCFKCFLWNKCMCLSVSLSLSLCLSL
CLCLHVSVRVSVSLFLFACEAVWMCLRPSVSVCVVSVRIFVCVCVCVCIC
VSV*
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mRNA from alignment at scaffold_6:718814..719245+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3591 ID=mRNA_3591|Name=jgi.p|Nanoce1779_2|582708|organism=Nannochloropsis oceanica|type=mRNA|length=432bp|location=Sequence derived from alignment at scaffold_6:718814..719245+ (Nannochloropsis oceanica)
CGCTAGGCAGCAGCAGAGGCAAGGTACGTGTCCTGGACAGGTGTGGGGTG
TGGTGGACTGGATAACTAGTCCTCTTCCCCGCCCTCGTTGAAGTGTTCAC
ATGTGAACTGACATGCACACCGACTGGATTCACTCCAGTCGCATGCATCA
TGCACGGTCTCGGCAGGACGGCATGTGCGTTCGCTTTTGTTTCAAATGCT
TTTTATGGAATAAGTGCATGTGTCTCTCTGTCTCTCTGTCTCTCAGTCTA
TGTCTGAGTCTCTGTCTGTGTCTCCATGTCTCCGTCCGGGTCTCTGTGTC
TCTGTTTCTTTTTGCGTGTGAGGCTGTCTGGATGTGTTTGCGTCCGAGTG
TAAGTGTGTGTGTTGTATCTGTGCGTATTTTTGTCTGTGTCTGTGTCTGT
GTGTGTATCTGTGTGTCTGTCTGAATATGTGT
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Coding sequence (CDS) from alignment at scaffold_6:718814..719245+

>mRNA_3591 ID=mRNA_3591|Name=jgi.p|Nanoce1779_2|582708|organism=Nannochloropsis oceanica|type=CDS|length=312bp|location=Sequence derived from alignment at scaffold_6:718814..719245+ (Nannochloropsis oceanica)
ATGCACACCGACTGGATTCACTCCAGTCGCATGCATCATGCACGGTCTCG
GCAGGACGGCATGTGCGTTCGCTTTTGTTTCAAATGCTTTTTATGGAATA
AGTGCATGTGTCTCTCTGTCTCTCTGTCTCTCAGTCTATGTCTGAGTCTC
TGTCTGTGTCTCCATGTCTCCGTCCGGGTCTCTGTGTCTCTGTTTCTTTT
TGCGTGTGAGGCTGTCTGGATGTGTTTGCGTCCGAGTGTAAGTGTGTGTG
TTGTATCTGTGCGTATTTTTGTCTGTGTCTGTGTCTGTGTGTGTATCTGT
GTGTCTGTCTGA
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Synonyms
Publications