jgi.p|Nanoce1779_2|636714, mRNA_359 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|636714
Unique Name	mRNA_359
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1065
Alignment location	scaffold_3:895353..896641 +

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Properties


Property Name	Value
TranscriptId	636800
Track	FilteredModels2
ProteinId	636714

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:895353..896641 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|636714	gene_359	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|636714	mRNA_359-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_359	CDS_359	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:895353..896641+
coding sequence from alignment at scaffold_3:895353..896641+

mRNA sequence

>mRNA_359 ID=mRNA_359|Name=jgi.p|Nanoce1779_2|636714|organism=Nannochloropsis oceanica|type=mRNA|length=1065bp
ATGCGCTACTGTACCGTGCCTCGACTGCCTGACTCAGTCTGGTGTGGGAA
CCATCAACACCTTGCTGCGGGGCACGACGACGACGATGCCAAGCCCACGC
GGAGCAAAACTCAGGAGAAACGGGGCGGACAACGCCGCCTGCCTTGCCCT
TTGGATCCCAAACACACTGTGTACGAACGCGAGCTCAACGCACATCTCAA
GGTGTGCAATGTTAAGAAGGAGATGCGAGGCTTGGAACGTCAACCGTTCT
ATCGAGTGGGGGCCAACAGTGGTGCTGCTGTAGAAGAAGCCCGCGCCCTC
TTTGCCAAAGCTCGCCACCTAGCTTCGGAAAAGCGACCTCATCCTCGGGG
CGACGTGATCGAGCAATTAATCAAGGGACCAGTAGCCACGAAAATCCTCG
CCAGCATTGAAAGCAACAACGTGACCAGCGAAGCAAAAGCGCGGCATGTC
ATCCAACAAGCGTCTCTTGTTTCCCATTTAAACCGCCGCGGCCTTTTATA
CAATCGGAGTACGTGCGTAGAAATGGGTGCCGGCCGAGGGACTTTGGGAC
AAGCTGTTCATTTGGCTTTCCCCCAAGCTCGCGTCATGCTGGTCGAGAGA
TCAGGTGTTAAGTTCAAGGCGGACGCGCCCTTTCGAAGGACGGGGGAGGG
ATCCTACTTCGAGCGATATCGATTGGATATCCGTGATTTATGGATCAAGG
GACTCCCGCTTTCTTCTTCGTCGCCGTCCTCCTTCTCCTCCTCCTCGTCC
CCGTCGGTGGCGGCGCAGACCCCTCCCTTAGTGTTCATGGGCAAGCACGT
ATGTGGAGTGGCTACCGATTTGTCATTGCGTGCGATTGCTAAGTTTCTTC
AGGCGGCTGACAAGACCAAGACGAGGAAGGAAGATAAAGTGGAAGAAAAA
GCCGAAGAAGGAGCAACGACGGCACTGGCCGATATAGATAAAGCAAATGG
AACGAGAGAAAAGCAAGAAATCAAAGAGGATGTAAATCAGGGCACGGAAG
GCGGCAGCAGCAGCAGCAACAATACCAACAACAACAACTACTACTATTAC
TACTACTACCACTAG

protein sequence of jgi.p|Nanoce1779_2|636714

>mRNA_359-protein ID=mRNA_359-protein|Name=jgi.p|Nanoce1779_2|636714|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MRYCTVPRLPDSVWCGNHQHLAAGHDDDDAKPTRSKTQEKRGGQRRLPCP
LDPKHTVYERELNAHLKVCNVKKEMRGLERQPFYRVGANSGAAVEEARAL
FAKARHLASEKRPHPRGDVIEQLIKGPVATKILASIESNNVTSEAKARHV
IQQASLVSHLNRRGLLYNRSTCVEMGAGRGTLGQAVHLAFPQARVMLVER
SGVKFKADAPFRRTGEGSYFERYRLDIRDLWIKGLPLSSSSPSSFSSSSS
PSVAAQTPPLVFMGKHVCGVATDLSLRAIAKFLQAADKTKTRKEDKVEEK
AEEGATTALADIDKANGTREKQEIKEDVNQGTEGGSSSSNNTNNNNYYYY
YYYH*

mRNA from alignment at scaffold_3:895353..896641+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_359 ID=mRNA_359|Name=jgi.p|Nanoce1779_2|636714|organism=Nannochloropsis oceanica|type=mRNA|length=1289bp|location=Sequence derived from alignment at scaffold_3:895353..896641+ (Nannochloropsis oceanica)
ATGCGCTACTGTACCGTGCCTCGACTGCCTGACTCAGTCTGGTGTGGGAA
CCATCAACACCTTGCTGCGGGGCACGACGACGACGATGCCAAGCCCACGC
GGAGCAAAACTCAGGAGAAACGGGGCGGACAACGCCGCCTGCCTTGCCCT
TTGGATCCCAAACACACTGTGTACGAACGCGAGCTCAACGCACATCTCAA
GGTGTGCAATGTTAAGAAGGAGATGCGAGGCTTGGAACGTCAACCGTTCT
ATCGAGTGGGGGCCAACAGTGGTGCTGCTGGTAGAGCCACACACGCATCC
CCCCCTTCTGCCACTGTATCCACCCTCACAGTAGAAGAAGCCCGCGCCCT
CTTTGCCAAAGCTCGCCACCTAGCTTCGGAAAAGCGACCTCATCCTCGGG
GCGACGTGATCGAGCAATTAATCAAGGGACCAGTAGCCACGAAAATCCTC
GCCAGCATTGAAAGCAACAACGTGACCAGCGAAGCAAAAGCGCGGCATGT
CATCCAACAAGCGTCTCTTGTTTCCCATTTAAACCGCCGCGGCCTTTTAT
ACAATCGGAGTACGTGCGTAGAAATGGGTGCCGGCCGAGGGACTTTGGGA
CAAGCTGTTCATTTGGCTTTCCCCCAAGCTCGCGTCATGCTGGTCGAGAG
ATCAGGTGTTAAGTTCAAGGCGGACGCGCCCTTTCGAAGGACGGGGGAGG
GATCCTACTTCGAGCGATATCGATTGGATATCCGTGATTTATGGATCAAG
GGACTCCCGCTTTCTTCTTCGTCGCCGTCCTCCTTCTCCTCCTCCTCGTC
CCCGTCGGTGGCGGCGCAGACCCCTCCCTTAGTGTTCATGGGCAAGCACG
TATGTGGAGTGGCTACCGATTTGTCATTGCGTGCGATTGCTAAGTTTCTT
CAGGCGGCTGACAAGACCAAGACGAGGAAGGAAGATAAAGTGGAAGAAAA
AGCCGAAGAAGGAGCAACGACGGCACTGGCCGATATAGATAAAGCAAATG
GAACGAGAGAAAAGCAAGAAATCAAAGAGGATGTAAATGTAGGAGTAGTA
ATAGCAACCTGCTGTTATCATGTCTGCAATTATGATGATTATGTCGGTAT
GGAAACGTGGGAGAACGAATTAAAGCTGACAAGGGCGGATTTTGAGGTGG
CTCAAAAGAGTGCTTGTTGGGTTCCCTCCTTGACCAGCTCTAGGGGTCAC
CGGCATAAAAGCAGGGCACGGAAGGCGGCAGCAGCAGCAGCAACAATACC
AACAACAACAACTACTACTATTACTACTACTACCACTAG

Coding sequence (CDS) from alignment at scaffold_3:895353..896641+

>mRNA_359 ID=mRNA_359|Name=jgi.p|Nanoce1779_2|636714|organism=Nannochloropsis oceanica|type=CDS|length=3195bp|location=Sequence derived from alignment at scaffold_3:895353..896641+ (Nannochloropsis oceanica)
ATGCGCTACTGTACCGTGCCTCGACTGCCTGACTCAGTCTGGTGTGGGAA
CCATCAACACCTTGCTGCGGGGCACGACGACGACGATGCCAAGCCCACGC
GGAGCAAAACTCAGGAGAAACGGGGCGGACAACGCCGCCTGCCTTGCCCT
TTGGATCCCAAACACACTGTGTACGAACGCGAGCTCAACGCACATCTCAA
GGTGTGCAATGTTAAGAAGGAGATGCGAGGCTTGGAACGTCAACCGTTCT
ATCGAGTGGGGGCCAACAGTGGTGCTGCTGTAGAAGAAGCCCGCGCCCTC
TTTGCCAAAGCTCGCCACCTAGCTTCGGAAAAGCGACCTCATCCTCGGGG
CGACGTGATCGAGCAATTAATCAAGGGACCAGTAGCCACGAAAATCCTCG
CCAGCATTGAAAGCAACAACGTGACCAGCGAAGCAAAAGCGCGGCATGTC
ATCCAACAAGCGTCTCTTGTTTCCCATTTAAACCGCCGCGGCCTTTTATA
CAATCGGAGTACGTGCGTAGAAATGGGTGCCGGCCGAGGGACTTTGGGAC
AAGCTGTTCATTTGGCTTTCCCCCAAGCTCGCGTCATGCTGGTCGAGAGA
TCAGGTGTTAAGTTCAAGGCGGACGCGCCCTTTCGAAGGACGGGGGAGGG
ATCCTACTTCGAGCGATATCGATTGGATATCCGTGATTTATGGATCAAGG
GACTCCCGCTTTCTTCTTCGTCGCCGTCCTCCTTCTCCTCCTCCTCGTCC
CCGTCGGTGGCGGCGCAGACCCCTCCCTTAGTGTTCATGGGCAAGCACGT
ATGTGGAGTGGCTACCGATTTGTCATTGCGTGCGATTGCTAAGTTTCTTC
AGGCGGCTGACAAGACCAAGACGAGGAAGGAAGATAAAGTGGAAGAAAAA
GCCGAAGAAGGAGCAACGACGGCACTGGCCGATATAGATAAAGCAAATGG
AACGAGAGAAAAGCAAGAAATCAAAGAGGATGTAAATCAGGGCACGGAAG
GCGGCAGCAGCAGCAGCAACAATACCAACAACAACAACTACTACTATTAC
TACTACTACCACTAGATGCGCTACTGTACCGTGCCTCGACTGCCTGACTC
AGTCTGGTGTGGGAACCATCAACACCTTGCTGCGGGGCACGACGACGACG
ATGCCAAGCCCACGCGGAGCAAAACTCAGGAGAAACGGGGCGGACAACGC
CGCCTGCCTTGCCCTTTGGATCCCAAACACACTGTGTACGAACGCGAGCT
CAACGCACATCTCAAGGTGTGCAATGTTAAGAAGGAGATGCGAGGCTTGG
AACGTCAACCGTTCTATCGAGTGGGGGCCAACAGTGGTGCTGCTGTAGAA
GAAGCCCGCGCCCTCTTTGCCAAAGCTCGCCACCTAGCTTCGGAAAAGCG
ACCTCATCCTCGGGGCGACGTGATCGAGCAATTAATCAAGGGACCAGTAG
CCACGAAAATCCTCGCCAGCATTGAAAGCAACAACGTGACCAGCGAAGCA
AAAGCGCGGCATGTCATCCAACAAGCGTCTCTTGTTTCCCATTTAAACCG
CCGCGGCCTTTTATACAATCGGAGTACGTGCGTAGAAATGGGTGCCGGCC
GAGGGACTTTGGGACAAGCTGTTCATTTGGCTTTCCCCCAAGCTCGCGTC
ATGCTGGTCGAGAGATCAGGTGTTAAGTTCAAGGCGGACGCGCCCTTTCG
AAGGACGGGGGAGGGATCCTACTTCGAGCGATATCGATTGGATATCCGTG
ATTTATGGATCAAGGGACTCCCGCTTTCTTCTTCGTCGCCGTCCTCCTTC
TCCTCCTCCTCGTCCCCGTCGGTGGCGGCGCAGACCCCTCCCTTAGTGTT
CATGGGCAAGCACGTATGTGGAGTGGCTACCGATTTGTCATTGCGTGCGA
TTGCTAAGTTTCTTCAGGCGGCTGACAAGACCAAGACGAGGAAGGAAGAT
AAAGTGGAAGAAAAAGCCGAAGAAGGAGCAACGACGGCACTGGCCGATAT
AGATAAAGCAAATGGAACGAGAGAAAAGCAAGAAATCAAAGAGGATGTAA
ATCAGGGCACGGAAGGCGGCAGCAGCAGCAGCAACAATACCAACAACAAC
AACTACTACTATTACTACTACTACCACTAGATGCGCTACTGTACCGTGCC
TCGACTGCCTGACTCAGTCTGGTGTGGGAACCATCAACACCTTGCTGCGG
GGCACGACGACGACGATGCCAAGCCCACGCGGAGCAAAACTCAGGAGAAA
CGGGGCGGACAACGCCGCCTGCCTTGCCCTTTGGATCCCAAACACACTGT
GTACGAACGCGAGCTCAACGCACATCTCAAGGTGTGCAATGTTAAGAAGG
AGATGCGAGGCTTGGAACGTCAACCGTTCTATCGAGTGGGGGCCAACAGT
GGTGCTGCTGTAGAAGAAGCCCGCGCCCTCTTTGCCAAAGCTCGCCACCT
AGCTTCGGAAAAGCGACCTCATCCTCGGGGCGACGTGATCGAGCAATTAA
TCAAGGGACCAGTAGCCACGAAAATCCTCGCCAGCATTGAAAGCAACAAC
GTGACCAGCGAAGCAAAAGCGCGGCATGTCATCCAACAAGCGTCTCTTGT
TTCCCATTTAAACCGCCGCGGCCTTTTATACAATCGGAGTACGTGCGTAG
AAATGGGTGCCGGCCGAGGGACTTTGGGACAAGCTGTTCATTTGGCTTTC
CCCCAAGCTCGCGTCATGCTGGTCGAGAGATCAGGTGTTAAGTTCAAGGC
GGACGCGCCCTTTCGAAGGACGGGGGAGGGATCCTACTTCGAGCGATATC
GATTGGATATCCGTGATTTATGGATCAAGGGACTCCCGCTTTCTTCTTCG
TCGCCGTCCTCCTTCTCCTCCTCCTCGTCCCCGTCGGTGGCGGCGCAGAC
CCCTCCCTTAGTGTTCATGGGCAAGCACGTATGTGGAGTGGCTACCGATT
TGTCATTGCGTGCGATTGCTAAGTTTCTTCAGGCGGCTGACAAGACCAAG
ACGAGGAAGGAAGATAAAGTGGAAGAAAAAGCCGAAGAAGGAGCAACGAC
GGCACTGGCCGATATAGATAAAGCAAATGGAACGAGAGAAAAGCAAGAAA
TCAAAGAGGATGTAAATCAGGGCACGGAAGGCGGCAGCAGCAGCAGCAAC
AATACCAACAACAACAACTACTACTATTACTACTACTACCACTAG

Synonyms

Publications