jgi.p|Nanoce1779_2|582702, mRNA_3589 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582702
Unique NamemRNA_3589
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1148
Alignment locationscaffold_6:715364..716511 +

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Properties
Property NameValue
TranscriptId582788
TrackFilteredModels2
ProteinId582702
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:715364..716511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582702gene_3589Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582702mRNA_3589-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3589CDS_3589Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3589 ID=mRNA_3589|Name=jgi.p|Nanoce1779_2|582702|organism=Nannochloropsis oceanica|type=mRNA|length=1148bp
CGCCATGGCTTACCCGTGACTTTATGGCCCCCAGATGAGAAACTGGCCGT
ACCTGTTAAGGGAGGGGGGGGGTGAGAAGGGTCCAGAGAAGGGGAACGAG
CTGTCCATCAGAAGGGGAAGTTTTCCTGAGTAAGCCACAGCCCCTATCTC
CCCGGTGTCCTCGCTCGTCTCGGCGCACTCGCTAACGAAGCACGAGGGCT
GCAGCTTCGCATTGCAATTTTGCCTGCCTCACACCGCACTTACATCCACA
CCATATCCATACACAACAGGCACATAGCCAGGACGAGCGCCTTGTCCTGT
CACACCGCGACCATTTCGGCTCCAAATTCTCGTGCTCCATCGGCCGGGCC
TCAACAGACGAGGCCGCATCCCTCTCGCCTGGGCGCATAAGGGAGCAGAG
ACAACAAGCCAAAACTCAGTCCGCATCTTGCAACACCCACCATCTATAAC
ACAACCACAACAAAGACATGTCCTCAAATAATGCCAGCCCACGTTGGCTG
GAAGAAGAGGCTACAGATGCCTTGATGGAACCAGAGGAAGGGCTAGAAGG
AGGAGGAGACGAGGAAGAGCTACCTGCAGGAGGAAGGGTCACACGCTCTT
CTACAAAAGCGGATTCGGGACGAAAGAGGCAGACATGGAAGTTAGCAGGA
CATTTTAGTCCGCAGCAAACTGAGGAAGACGACACACAGGGAGAGCGGAA
ACGGCGCATCACTAAGCCCTTTTTCGCCATTCTTAGCACGATTATCGTAT
TGCTGAGCCTCGTGAGCGTCGCCTATAACCTCTACTTGATTATCCAAAAA
GACGGTACCACTACCTCAATCCTTCCCCGCATCTATCGGGGGTTTGCCAT
TGTGCTCGCCTTTGCAGCTATTTTAACAGAGGCTAGCGTGAAGTGGTGGA
AGAAGCTCTGCCCAGTCCTTTCTTACCTCTTCGTGCGTGGGTTTTTTTAT
TGCCTAATTGCTATTTTGAGTCTGGAAGACTTCAACGCCAGAGATGACAA
TGTGGTAGGATTTGTTTTTTTGGGGTTTGGTCTCTTCTATGTCGCATTGG
CCCTTATGTGTGTGCAACGGCATGTGGAAATTATGTAGAGCAGGCGGGAA
GGATGAAAGAGGAAAACAAAAAGAAGCATGTACATACAAGACGTAGAA
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protein sequence of jgi.p|Nanoce1779_2|582702

>mRNA_3589-protein ID=mRNA_3589-protein|Name=jgi.p|Nanoce1779_2|582702|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp
MSSNNASPRWLEEEATDALMEPEEGLEGGGDEEELPAGGRVTRSSTKADS
GRKRQTWKLAGHFSPQQTEEDDTQGERKRRITKPFFAILSTIIVLLSLVS
VAYNLYLIIQKDGTTTSILPRIYRGFAIVLAFAAILTEASVKWWKKLCPV
LSYLFVRGFFYCLIAILSLEDFNARDDNVVGFVFLGFGLFYVALALMCVQ
RHVEIM*
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mRNA from alignment at scaffold_6:715364..716511+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3589 ID=mRNA_3589|Name=jgi.p|Nanoce1779_2|582702|organism=Nannochloropsis oceanica|type=mRNA|length=1148bp|location=Sequence derived from alignment at scaffold_6:715364..716511+ (Nannochloropsis oceanica)
CGCCATGGCTTACCCGTGACTTTATGGCCCCCAGATGAGAAACTGGCCGT
ACCTGTTAAGGGAGGGGGGGGGTGAGAAGGGTCCAGAGAAGGGGAACGAG
CTGTCCATCAGAAGGGGAAGTTTTCCTGAGTAAGCCACAGCCCCTATCTC
CCCGGTGTCCTCGCTCGTCTCGGCGCACTCGCTAACGAAGCACGAGGGCT
GCAGCTTCGCATTGCAATTTTGCCTGCCTCACACCGCACTTACATCCACA
CCATATCCATACACAACAGGCACATAGCCAGGACGAGCGCCTTGTCCTGT
CACACCGCGACCATTTCGGCTCCAAATTCTCGTGCTCCATCGGCCGGGCC
TCAACAGACGAGGCCGCATCCCTCTCGCCTGGGCGCATAAGGGAGCAGAG
ACAACAAGCCAAAACTCAGTCCGCATCTTGCAACACCCACCATCTATAAC
ACAACCACAACAAAGACATGTCCTCAAATAATGCCAGCCCACGTTGGCTG
GAAGAAGAGGCTACAGATGCCTTGATGGAACCAGAGGAAGGGCTAGAAGG
AGGAGGAGACGAGGAAGAGCTACCTGCAGGAGGAAGGGTCACACGCTCTT
CTACAAAAGCGGATTCGGGACGAAAGAGGCAGACATGGAAGTTAGCAGGA
CATTTTAGTCCGCAGCAAACTGAGGAAGACGACACACAGGGAGAGCGGAA
ACGGCGCATCACTAAGCCCTTTTTCGCCATTCTTAGCACGATTATCGTAT
TGCTGAGCCTCGTGAGCGTCGCCTATAACCTCTACTTGATTATCCAAAAA
GACGGTACCACTACCTCAATCCTTCCCCGCATCTATCGGGGGTTTGCCAT
TGTGCTCGCCTTTGCAGCTATTTTAACAGAGGCTAGCGTGAAGTGGTGGA
AGAAGCTCTGCCCAGTCCTTTCTTACCTCTTCGTGCGTGGGTTTTTTTAT
TGCCTAATTGCTATTTTGAGTCTGGAAGACTTCAACGCCAGAGATGACAA
TGTGGTAGGATTTGTTTTTTTGGGGTTTGGTCTCTTCTATGTCGCATTGG
CCCTTATGTGTGTGCAACGGCATGTGGAAATTATGTAGAGCAGGCGGGAA
GGATGAAAGAGGAAAACAAAAAGAAGCATGTACATACAAGACGTAGAA
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Coding sequence (CDS) from alignment at scaffold_6:715364..716511+

>mRNA_3589 ID=mRNA_3589|Name=jgi.p|Nanoce1779_2|582702|organism=Nannochloropsis oceanica|type=CDS|length=621bp|location=Sequence derived from alignment at scaffold_6:715364..716511+ (Nannochloropsis oceanica)
ATGTCCTCAAATAATGCCAGCCCACGTTGGCTGGAAGAAGAGGCTACAGA
TGCCTTGATGGAACCAGAGGAAGGGCTAGAAGGAGGAGGAGACGAGGAAG
AGCTACCTGCAGGAGGAAGGGTCACACGCTCTTCTACAAAAGCGGATTCG
GGACGAAAGAGGCAGACATGGAAGTTAGCAGGACATTTTAGTCCGCAGCA
AACTGAGGAAGACGACACACAGGGAGAGCGGAAACGGCGCATCACTAAGC
CCTTTTTCGCCATTCTTAGCACGATTATCGTATTGCTGAGCCTCGTGAGC
GTCGCCTATAACCTCTACTTGATTATCCAAAAAGACGGTACCACTACCTC
AATCCTTCCCCGCATCTATCGGGGGTTTGCCATTGTGCTCGCCTTTGCAG
CTATTTTAACAGAGGCTAGCGTGAAGTGGTGGAAGAAGCTCTGCCCAGTC
CTTTCTTACCTCTTCGTGCGTGGGTTTTTTTATTGCCTAATTGCTATTTT
GAGTCTGGAAGACTTCAACGCCAGAGATGACAATGTGGTAGGATTTGTTT
TTTTGGGGTTTGGTCTCTTCTATGTCGCATTGGCCCTTATGTGTGTGCAA
CGGCATGTGGAAATTATGTAG
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Synonyms
Publications