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Properties
| Property Name | Value |
|---|
| TranscriptId | 629077 |
| Track | FilteredModels2 |
| ProteinId | 628991 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:712662..715420 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3588 ID=mRNA_3588|Name=jgi.p|Nanoce1779_2|628991|organism=Nannochloropsis oceanica|type=mRNA|length=2662bp
AACAGGTACGGCCAGTTTCTCATCTGGGGGCCATAAAGTCACGGGTAAGC
CATGGCGTCGCCACCGGGCCCACCGACAAGCAGATCAGGTGATGAGGTGG
AGGAGGAGCAGAGGCCTGAGACACGCTCCCTACCCCGGCAAGGATCTGGA
TGCCACCGTCCGCGCCGCCCTTACAGGAGTTCAAATGTAGCAACGGCGCT
GGCAGCAATGACGGGTGGTTTATTTTTCCTGACTTGTCCTTGTCCCCTTG
CGGCAGCGTCGCGTGAAGGAGGCCGACCCGCAACCTCAATAAGTGCTGCG
TTTCTAGGCGGCCTGCGGACAAGAAAAGTTTCCTCCTCGTCCCCCCCCAT
CACGTCGTCGACTTTTCATTGCAGTTACAAGCACCGACGGCTCGACAGTT
TAGCACTACGAGACGGTCCCGCGACACAACATAGAGACGGTCGCCGTGGT
GGGGAAGGAGGGGAGGAAGGGGTGGAAGATGAAGACGAGTCCCAAAGATA
CGCCTCCATCATGCGAGAGATGGCTGAGAGATATACAAGCAGGCAGGAGA
TATACCGCAGCGAGATAGGCCTGAGGATGGCGCTGTCGGAACTGGACAAG
GTGGAGGCCACGGCCCAGCTATCGCGGGCACAGGAAGAGCAAGAGAGGCG
AGAGACGGCTGAACGACAGGCTGACGCAGACAGGCTGCGCGACCAGCTAG
CGGGAGGACGAGCAGGGAGACGGAGCAGCAGCATGGCCGAGGCAGAATCG
GCAGCAGACGCATCTGGGAGTGAAGCTGCGGGTGGTACATCACCTTTCAC
GAATCCCTTTGTTGGTGCTGCCGGCAAGGCCGGGGCCAGTAGTGGTGGTG
GTTTTCCTTTCCCCGAGCCGGAGCTACCTGATTTTCTTGACTTGAAGACA
CTGGGTTTGATGGGTAGGTGGGAGGAGGTGGGGGGTAATTTTCTTTTGCG
GCCGCCGGATCATGGTAGCAACCCTCCGAAGGCCGTGTTGCACTTTTTGG
GAGGGGCTTTCGTGGGAGCGGCACCTCATTTGACCTACCGGTATTTGTTG
ACGGGGCTGGCAGAGAAGGGTTTTCTGGTTGTTGCGACGCCGTATAATCT
GTCGTTTGATTACGTACAAACGTGTGACATGGTGTTGGAGAGGTTCGAGA
AAGTGGCCATACCGCTAGCGAGAGAGTATGGGGCCCTTCCTGTGGTGGGG
ATCGGGCATTCGTGTGGAGCGTTGCTGCACGTGCTGATAACGTGCTTGTT
CCCGGATACCCCCCGCTTGGCCAATGCCCTTATCTCTTTTAATAATCAGA
ACGTACAGAAGGCCATTCCGGCATTTGAAGAGCTGGTGGTTCCGTTGTCC
GTCTCCCTGATGGGTGATGATGGCTTGCTCGGCGGCTCCCCTGTCTTAGC
GGCTGATGGGGGGGCGCTTGGGGCGGGAACGGCATTGCGACAGTCCTTGG
GGAAGCTGAGGCAGACCGTGGAGGAGGTGGTGGAAGCTTATTCGGCGAGT
AGGCTGGCGCCGTCTGTGATGAGGAATGAAGTGTTGCCGCTGATGAGACA
GGTGTTATCGGTTGTCGATCAGTTGCCGCCGTTGTTGCAGTCTATTTCGG
ATGGCGCGCGGGAGTTTGCACCGACGCCTGACGATACCAGGGAGGTGTGT
CGAAGGATGTACCGGGCACGACGGACGCTATTGGTACAGTTTGAAGATGA
TTCCATTGATGAAAGCGAGAATTTGATGAAGGTACTGCAGGAATCTCGAT
CAATCATGCGGATGAAACGCCCCCTTGTAAAGATGGACGTGAGGCTGGAG
ACGGTCAAAGGTACGCATATCACACCTCTAACGCAAGATATGTTTAGGGA
CCCGCCAGCGGTCGTGGATGTGTTGAATCCTCTGGGGCCGCCTGTAAGGA
GATACGCGCAAGAGCAATTTCTGGCGACGGTTCGGAGCGTGCAGGCATTG
TTGCTGGAATGGTTGGAGGAGGGGCTGGTACGGTAGATAGCTAGTCGGAG
AGCATTGTGTGAAGAGGTACACGAGAATAGTTCGCCTTTTCTCTGCTGCG
CGTGGTGGAAAGGGAAAAGGAGAAGAGGCAGGAAGCGGGCGGTAATGATA
GAGCATGATAGGTGTAATGTTTACTTTCTTATCTTTCCAATTGTACCGTA
AATCATGACAAATATTGATAACTGAGAATTAGTCTGGGTAGGGAGGAGGT
TGTGGTGTTGAGCTTTGGGCTTGAAAAAGTTGTTGACTCTTGTGTCTCTC
CATTTACTTTGTACATGTGTACAAAATCTTCATTCTGTCACGAGACTGGC
AAGGGCTCATGGTCGAACGTGTGTTTTCGAATTGATTCATACAGGTACAA
GGATGGGGGCGTACTTCTTGTCAGCGAGCCTGAGAGGAGACCGACCTCAC
CCAAAAAAAAAGGTCCTTCCTTTCTGTTTGCCACCTTTGAACCCTGAAAA
GTATGTTTGGAGCGCGTGTGGAAAGTGCTAGATGGTTATATGTGGCTGAG
GGTCGTAGTGGCTTGTTCGAGGCTCTTGGCTTTTAATGGTGATTTTGGCG
CCGCCTTAGTCGTAACAACCAGCCCGCCCGCTCACACCATTTCTTGGCGG
AGCTTCTCGTCTTGTACACCCTGACACTCACATGGCCCCTCGATGTCCCT
GTCCGCCCCTCA back to topprotein sequence of jgi.p|Nanoce1779_2|628991 >mRNA_3588-protein ID=mRNA_3588-protein|Name=jgi.p|Nanoce1779_2|628991|organism=Nannochloropsis oceanica|type=polypeptide|length=645bp
MASPPGPPTSRSGDEVEEEQRPETRSLPRQGSGCHRPRRPYRSSNVATAL
AAMTGGLFFLTCPCPLAAASREGGRPATSISAAFLGGLRTRKVSSSSPPI
TSSTFHCSYKHRRLDSLALRDGPATQHRDGRRGGEGGEEGVEDEDESQRY
ASIMREMAERYTSRQEIYRSEIGLRMALSELDKVEATAQLSRAQEEQERR
ETAERQADADRLRDQLAGGRAGRRSSSMAEAESAADASGSEAAGGTSPFT
NPFVGAAGKAGASSGGGFPFPEPELPDFLDLKTLGLMGRWEEVGGNFLLR
PPDHGSNPPKAVLHFLGGAFVGAAPHLTYRYLLTGLAEKGFLVVATPYNL
SFDYVQTCDMVLERFEKVAIPLAREYGALPVVGIGHSCGALLHVLITCLF
PDTPRLANALISFNNQNVQKAIPAFEELVVPLSVSLMGDDGLLGGSPVLA
ADGGALGAGTALRQSLGKLRQTVEEVVEAYSASRLAPSVMRNEVLPLMRQ
VLSVVDQLPPLLQSISDGAREFAPTPDDTREVCRRMYRARRTLLVQFEDD
SIDESENLMKVLQESRSIMRMKRPLVKMDVRLETVKGTHITPLTQDMFRD
PPAVVDVLNPLGPPVRRYAQEQFLATVRSVQALLLEWLEEGLVR* back to topmRNA from alignment at scaffold_6:712662..715420- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3588 ID=mRNA_3588|Name=jgi.p|Nanoce1779_2|628991|organism=Nannochloropsis oceanica|type=mRNA|length=2759bp|location=Sequence derived from alignment at scaffold_6:712662..715420- (Nannochloropsis oceanica)
AACAGGTACGGCCAGTTTCTCATCTGGGGGCCATAAAGTCACGGGTAAGC
CATGGCGTCGCCACCGGGCCCACCGACAAGCAGATCAGGTGATGAGGTGG
AGGAGGAGCAGAGGCCTGAGACACGCTCCCTACCCCGGCAAGGATCTGGA
TGCCACCGTCCGCGCCGCCCTTACAGGAGTTCAAATGTAGCAACGGCGCT
GGCAGCAATGACGGGTGGTTTATTTTTCCTGACTTGTCCTTGTCCCCTTG
CGGCAGCGTCGCGTGAAGGAGGCCGACCCGCAACCTCAATAAGTGCTGCG
TTTCTAGGCGGCCTGCGGACAAGAAAAGTTTCCTCCTCGTCCCCCCCCAT
CACGTCGTCGACTTTTCATTGCAGTTACAAGCACCGACGGCTCGACAGTT
TAGCACTACGAGACGGTCCCGCGACACAACATAGAGACGGTCGCCGTGGT
GGGGAAGGAGGGGAGGAAGGGGTGGAAGATGAAGACGAGTCCCAAAGATA
CGCCTCCATCATGCGAGAGATGGCTGAGAGGTACGATTGATTATTTGGTA
GGCAAAATAGAGAATGTGGCACAAACAAATAAATTATTCATCCTTGCCAC
CCATTCCATTTGTCCTCCTTTATATAGATATACAAGCAGGCAGGAGATAT
ACCGCAGCGAGATAGGCCTGAGGATGGCGCTGTCGGAACTGGACAAGGTG
GAGGCCACGGCCCAGCTATCGCGGGCACAGGAAGAGCAAGAGAGGCGAGA
GACGGCTGAACGACAGGCTGACGCAGACAGGCTGCGCGACCAGCTAGCGG
GAGGACGAGCAGGGAGACGGAGCAGCAGCATGGCCGAGGCAGAATCGGCA
GCAGACGCATCTGGGAGTGAAGCTGCGGGTGGTACATCACCTTTCACGAA
TCCCTTTGTTGGTGCTGCCGGCAAGGCCGGGGCCAGTAGTGGTGGTGGTT
TTCCTTTCCCCGAGCCGGAGCTACCTGATTTTCTTGACTTGAAGACACTG
GGTTTGATGGGTAGGTGGGAGGAGGTGGGGGGTAATTTTCTTTTGCGGCC
GCCGGATCATGGTAGCAACCCTCCGAAGGCCGTGTTGCACTTTTTGGGAG
GGGCTTTCGTGGGAGCGGCACCTCATTTGACCTACCGGTATTTGTTGACG
GGGCTGGCAGAGAAGGGTTTTCTGGTTGTTGCGACGCCGTATAATCTGTC
GTTTGATTACGTACAAACGTGTGACATGGTGTTGGAGAGGTTCGAGAAAG
TGGCCATACCGCTAGCGAGAGAGTATGGGGCCCTTCCTGTGGTGGGGATC
GGGCATTCGTGTGGAGCGTTGCTGCACGTGCTGATAACGTGCTTGTTCCC
GGATACCCCCCGCTTGGCCAATGCCCTTATCTCTTTTAATAATCAGAACG
TACAGAAGGCCATTCCGGCATTTGAAGAGCTGGTGGTTCCGTTGTCCGTC
TCCCTGATGGGTGATGATGGCTTGCTCGGCGGCTCCCCTGTCTTAGCGGC
TGATGGGGGGGCGCTTGGGGCGGGAACGGCATTGCGACAGTCCTTGGGGA
AGCTGAGGCAGACCGTGGAGGAGGTGGTGGAAGCTTATTCGGCGAGTAGG
CTGGCGCCGTCTGTGATGAGGAATGAAGTGTTGCCGCTGATGAGACAGGT
GTTATCGGTTGTCGATCAGTTGCCGCCGTTGTTGCAGTCTATTTCGGATG
GCGCGCGGGAGTTTGCACCGACGCCTGACGATACCAGGGAGGTGTGTCGA
AGGATGTACCGGGCACGACGGACGCTATTGGTACAGTTTGAAGATGATTC
CATTGATGAAAGCGAGAATTTGATGAAGGTACTGCAGGAATCTCGATCAA
TCATGCGGATGAAACGCCCCCTTGTAAAGATGGACGTGAGGCTGGAGACG
GTCAAAGGTACGCATATCACACCTCTAACGCAAGATATGTTTAGGGACCC
GCCAGCGGTCGTGGATGTGTTGAATCCTCTGGGGCCGCCTGTAAGGAGAT
ACGCGCAAGAGCAATTTCTGGCGACGGTTCGGAGCGTGCAGGCATTGTTG
CTGGAATGGTTGGAGGAGGGGCTGGTACGGTAGATAGCTAGTCGGAGAGC
ATTGTGTGAAGAGGTACACGAGAATAGTTCGCCTTTTCTCTGCTGCGCGT
GGTGGAAAGGGAAAAGGAGAAGAGGCAGGAAGCGGGCGGTAATGATAGAG
CATGATAGGTGTAATGTTTACTTTCTTATCTTTCCAATTGTACCGTAAAT
CATGACAAATATTGATAACTGAGAATTAGTCTGGGTAGGGAGGAGGTTGT
GGTGTTGAGCTTTGGGCTTGAAAAAGTTGTTGACTCTTGTGTCTCTCCAT
TTACTTTGTACATGTGTACAAAATCTTCATTCTGTCACGAGACTGGCAAG
GGCTCATGGTCGAACGTGTGTTTTCGAATTGATTCATACAGGTACAAGGA
TGGGGGCGTACTTCTTGTCAGCGAGCCTGAGAGGAGACCGACCTCACCCA
AAAAAAAAGGTCCTTCCTTTCTGTTTGCCACCTTTGAACCCTGAAAAGTA
TGTTTGGAGCGCGTGTGGAAAGTGCTAGATGGTTATATGTGGCTGAGGGT
CGTAGTGGCTTGTTCGAGGCTCTTGGCTTTTAATGGTGATTTTGGCGCCG
CCTTAGTCGTAACAACCAGCCCGCCCGCTCACACCATTTCTTGGCGGAGC
TTCTCGTCTTGTACACCCTGACACTCACATGGCCCCTCGATGTCCCTGTC
CGCCCCTCA back to topCoding sequence (CDS) from alignment at scaffold_6:712662..715420- >mRNA_3588 ID=mRNA_3588|Name=jgi.p|Nanoce1779_2|628991|organism=Nannochloropsis oceanica|type=CDS|length=3870bp|location=Sequence derived from alignment at scaffold_6:712662..715420- (Nannochloropsis oceanica)
ATATACAAGCAGGCAGGAGATATACCGCAGCGAGATAGGCCTGAGGATGG
CGCTGTCGGAACTGGACAAGGTGGAGGCCACGGCCCAGCTATCGCGGGCA
CAGGAAGAGCAAGAGAGGCGAGAGACGGCTGAACGACAGGCTGACGCAGA
CAGGCTGCGCGACCAGCTAGCGGGAGGACGAGCAGGGAGACGGAGCAGCA
GCATGGCCGAGGCAGAATCGGCAGCAGACGCATCTGGGAGTGAAGCTGCG
GGTGGTACATCACCTTTCACGAATCCCTTTGTTGGTGCTGCCGGCAAGGC
CGGGGCCAGTAGTGGTGGTGGTTTTCCTTTCCCCGAGCCGGAGCTACCTG
ATTTTCTTGACTTGAAGACACTGGGTTTGATGGGTAGGTGGGAGGAGGTG
GGGGGTAATTTTCTTTTGCGGCCGCCGGATCATGGTAGCAACCCTCCGAA
GGCCGTGTTGCACTTTTTGGGAGGGGCTTTCGTGGGAGCGGCACCTCATT
TGACCTACCGGTATTTGTTGACGGGGCTGGCAGAGAAGGGTTTTCTGGTT
GTTGCGACGCCGTATAATCTGTCGTTTGATTACGTACAAACGTGTGACAT
GGTGTTGGAGAGGTTCGAGAAAGTGGCCATACCGCTAGCGAGAGAGTATG
GGGCCCTTCCTGTGGTGGGGATCGGGCATTCGTGTGGAGCGTTGCTGCAC
GTGCTGATAACGTGCTTGTTCCCGGATACCCCCCGCTTGGCCAATGCCCT
TATCTCTTTTAATAATCAGAACGTACAGAAGGCCATTCCGGCATTTGAAG
AGCTGGTGGTTCCGTTGTCCGTCTCCCTGATGGGTGATGATGGCTTGCTC
GGCGGCTCCCCTGTCTTAGCGGCTGATGGGGGGGCGCTTGGGGCGGGAAC
GGCATTGCGACAGTCCTTGGGGAAGCTGAGGCAGACCGTGGAGGAGGTGG
TGGAAGCTTATTCGGCGAGTAGGCTGGCGCCGTCTGTGATGAGGAATGAA
GTGTTGCCGCTGATGAGACAGGTGTTATCGGTTGTCGATCAGTTGCCGCC
GTTGTTGCAGTCTATTTCGGATGGCGCGCGGGAGTTTGCACCGACGCCTG
ACGATACCAGGGAGGTGTGTCGAAGGATGTACCGGGCACGACGGACGCTA
TTGGTACAGTTTGAAGATGATTCCATTGATGAAAGCGAGAATTTGATGAA
GGTACTGCAGGAATCTCGATCAATCATGCGGATGAAACGCCCCCTTGTAA
AGATGGACGTGAGGCTGGAGACGGTCAAAGGTACGCATATCACACCTCTA
ACGCAAGATATGTTTAGGGACCCGCCAGCGGTCGTGGATGTGTTGAATCC
TCTGGGGCCGCCTGTAAGGAGATACGCGCAAGAGCAATTTCTGGCGACGG
TTCGGAGCGTGCAGGCATTGTTGCTGGAATGGTTGGAGGAGGGGCTGGTA
CGGTAGATGGCGTCGCCACCGGGCCCACCGACAAGCAGATCAGGTGATGA
GGTGGAGGAGGAGCAGAGGCCTGAGACACGCTCCCTACCCCGGCAAGGAT
CTGGATGCCACCGTCCGCGCCGCCCTTACAGGAGTTCAAATGTAGCAACG
GCGCTGGCAGCAATGACGGGTGGTTTATTTTTCCTGACTTGTCCTTGTCC
CCTTGCGGCAGCGTCGCGTGAAGGAGGCCGACCCGCAACCTCAATAAGTG
CTGCGTTTCTAGGCGGCCTGCGGACAAGAAAAGTTTCCTCCTCGTCCCCC
CCCATCACGTCGTCGACTTTTCATTGCAGTTACAAGCACCGACGGCTCGA
CAGTTTAGCACTACGAGACGGTCCCGCGACACAACATAGAGACGGTCGCC
GTGGTGGGGAAGGAGGGGAGGAAGGGGTGGAAGATGAAGACGAGTCCCAA
AGATACGCCTCCATCATGCGAGAGATGGCTGAGAGATATACAAGCAGGCA
GGAGATATACCGCAGCGAGATAGGCCTGAGGATGGCGCTGTCGGAACTGG
ACAAGGTGGAGGCCACGGCCCAGCTATCGCGGGCACAGGAAGAGCAAGAG
AGGCGAGAGACGGCTGAACGACAGGCTGACGCAGACAGGCTGCGCGACCA
GCTAGCGGGAGGACGAGCAGGGAGACGGAGCAGCAGCATGGCCGAGGCAG
AATCGGCAGCAGACGCATCTGGGAGTGAAGCTGCGGGTGGTACATCACCT
TTCACGAATCCCTTTGTTGGTGCTGCCGGCAAGGCCGGGGCCAGTAGTGG
TGGTGGTTTTCCTTTCCCCGAGCCGGAGCTACCTGATTTTCTTGACTTGA
AGACACTGGGTTTGATGGGTAGGTGGGAGGAGGTGGGGGGTAATTTTCTT
TTGCGGCCGCCGGATCATGGTAGCAACCCTCCGAAGGCCGTGTTGCACTT
TTTGGGAGGGGCTTTCGTGGGAGCGGCACCTCATTTGACCTACCGGTATT
TGTTGACGGGGCTGGCAGAGAAGGGTTTTCTGGTTGTTGCGACGCCGTAT
AATCTGTCGTTTGATTACGTACAAACGTGTGACATGGTGTTGGAGAGGTT
CGAGAAAGTGGCCATACCGCTAGCGAGAGAGTATGGGGCCCTTCCTGTGG
TGGGGATCGGGCATTCGTGTGGAGCGTTGCTGCACGTGCTGATAACGTGC
TTGTTCCCGGATACCCCCCGCTTGGCCAATGCCCTTATCTCTTTTAATAA
TCAGAACGTACAGAAGGCCATTCCGGCATTTGAAGAGCTGGTGGTTCCGT
TGTCCGTCTCCCTGATGGGTGATGATGGCTTGCTCGGCGGCTCCCCTGTC
TTAGCGGCTGATGGGGGGGCGCTTGGGGCGGGAACGGCATTGCGACAGTC
CTTGGGGAAGCTGAGGCAGACCGTGGAGGAGGTGGTGGAAGCTTATTCGG
CGAGTAGGCTGGCGCCGTCTGTGATGAGGAATGAAGTGTTGCCGCTGATG
AGACAGGTGTTATCGGTTGTCGATCAGTTGCCGCCGTTGTTGCAGTCTAT
TTCGGATGGCGCGCGGGAGTTTGCACCGACGCCTGACGATACCAGGGAGG
TGTGTCGAAGGATGTACCGGGCACGACGGACGCTATTGGTACAGTTTGAA
GATGATTCCATTGATGAAAGCGAGAATTTGATGAAGGTACTGCAGGAATC
TCGATCAATCATGCGGATGAAACGCCCCCTTGTAAAGATGGACGTGAGGC
TGGAGACGGTCAAAGGTACGCATATCACACCTCTAACGCAAGATATGTTT
AGGGACCCGCCAGCGGTCGTGGATGTGTTGAATCCTCTGGGGCCGCCTGT
AAGGAGATACGCGCAAGAGCAATTTCTGGCGACGGTTCGGAGCGTGCAGG
CATTGTTGCTGGAATGGTTGGAGGAGGGGCTGGTACGGTAGATGGCGTCG
CCACCGGGCCCACCGACAAGCAGATCAGGTGATGAGGTGGAGGAGGAGCA
GAGGCCTGAGACACGCTCCCTACCCCGGCAAGGATCTGGATGCCACCGTC
CGCGCCGCCCTTACAGGAGTTCAAATGTAGCAACGGCGCTGGCAGCAATG
ACGGGTGGTTTATTTTTCCTGACTTGTCCTTGTCCCCTTGCGGCAGCGTC
GCGTGAAGGAGGCCGACCCGCAACCTCAATAAGTGCTGCGTTTCTAGGCG
GCCTGCGGACAAGAAAAGTTTCCTCCTCGTCCCCCCCCATCACGTCGTCG
ACTTTTCATTGCAGTTACAAGCACCGACGGCTCGACAGTTTAGCACTACG
AGACGGTCCCGCGACACAACATAGAGACGGTCGCCGTGGTGGGGAAGGAG
GGGAGGAAGGGGTGGAAGATGAAGACGAGTCCCAAAGATACGCCTCCATC
ATGCGAGAGATGGCTGAGAG back to top
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