jgi.p|Nanoce1779_2|582700, mRNA_3587 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582700
Unique NamemRNA_3587
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length625
Alignment locationscaffold_6:712037..712661 -

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Properties
Property NameValue
TranscriptId582786
TrackFilteredModels2
ProteinId582700
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:712037..712661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582700gene_3587Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582700mRNA_3587-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3587CDS_3587Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3587 ID=mRNA_3587|Name=jgi.p|Nanoce1779_2|582700|organism=Nannochloropsis oceanica|type=mRNA|length=625bp
CAAACACAGCCAGCCGCTTCTACCCCTCTCCACCGCCCCATACAACGACT
CCCTCAAGCAAGATGGCGTCTCAGGCTTATGACCCCCGTCGCTCGAACGT
GAAGGAGGAGGCCTTGGCGGAGTTCATCAGGGCACCCATCACAGGGGAGT
TGACAGAAGTGCCTGGGATTGGTCCCAAGGCTGCCGAGGCCCTGGCTTCG
GGGGATGACCCTAACGAGAAAATCACCAACACCTACCAGCTCTTGGGCAA
GTACCTCTTGCTCAAAGGCCCGGACGATGACAAGCACACCGTTTCGTGCG
TGGAGCATTGCGACAAGTTTTGGGCGTTTCTGCAGAGCAAGGGTGTCAAC
TCGTACCGCTCCGGCATTGTGCAGTGCATTGCAGAGAAGTGCAACATCCT
TTTACCTGGCAGCTACGACGACACGGCATTTTCTTCTTAAGGAGGGATGG
AAGTAAAGCAAACGGCAGAATAATGATAGACAAAGAAAGCTTGGGAGAAG
AAGGCGGGTGTATGAGATGGAAGGGCTATCGTGTCAAACCAAATTTATTC
TTGGTGGGTCACGGTGGTGAGAGGGTGTGTGACCGTCGTATGTGTGTCTA
TTACTTGCACATGTATTGGGGGGAG
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protein sequence of jgi.p|Nanoce1779_2|582700

>mRNA_3587-protein ID=mRNA_3587-protein|Name=jgi.p|Nanoce1779_2|582700|organism=Nannochloropsis oceanica|type=polypeptide|length=126bp
MASQAYDPRRSNVKEEALAEFIRAPITGELTEVPGIGPKAAEALASGDDP
NEKITNTYQLLGKYLLLKGPDDDKHTVSCVEHCDKFWAFLQSKGVNSYRS
GIVQCIAEKCNILLPGSYDDTAFSS*
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mRNA from alignment at scaffold_6:712037..712661-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3587 ID=mRNA_3587|Name=jgi.p|Nanoce1779_2|582700|organism=Nannochloropsis oceanica|type=mRNA|length=625bp|location=Sequence derived from alignment at scaffold_6:712037..712661- (Nannochloropsis oceanica)
CAAACACAGCCAGCCGCTTCTACCCCTCTCCACCGCCCCATACAACGACT
CCCTCAAGCAAGATGGCGTCTCAGGCTTATGACCCCCGTCGCTCGAACGT
GAAGGAGGAGGCCTTGGCGGAGTTCATCAGGGCACCCATCACAGGGGAGT
TGACAGAAGTGCCTGGGATTGGTCCCAAGGCTGCCGAGGCCCTGGCTTCG
GGGGATGACCCTAACGAGAAAATCACCAACACCTACCAGCTCTTGGGCAA
GTACCTCTTGCTCAAAGGCCCGGACGATGACAAGCACACCGTTTCGTGCG
TGGAGCATTGCGACAAGTTTTGGGCGTTTCTGCAGAGCAAGGGTGTCAAC
TCGTACCGCTCCGGCATTGTGCAGTGCATTGCAGAGAAGTGCAACATCCT
TTTACCTGGCAGCTACGACGACACGGCATTTTCTTCTTAAGGAGGGATGG
AAGTAAAGCAAACGGCAGAATAATGATAGACAAAGAAAGCTTGGGAGAAG
AAGGCGGGTGTATGAGATGGAAGGGCTATCGTGTCAAACCAAATTTATTC
TTGGTGGGTCACGGTGGTGAGAGGGTGTGTGACCGTCGTATGTGTGTCTA
TTACTTGCACATGTATTGGGGGGAG
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Coding sequence (CDS) from alignment at scaffold_6:712037..712661-

>mRNA_3587 ID=mRNA_3587|Name=jgi.p|Nanoce1779_2|582700|organism=Nannochloropsis oceanica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_6:712037..712661- (Nannochloropsis oceanica)
ATGGCGTCTCAGGCTTATGACCCCCGTCGCTCGAACGTGAAGGAGGAGGC
CTTGGCGGAGTTCATCAGGGCACCCATCACAGGGGAGTTGACAGAAGTGC
CTGGGATTGGTCCCAAGGCTGCCGAGGCCCTGGCTTCGGGGGATGACCCT
AACGAGAAAATCACCAACACCTACCAGCTCTTGGGCAAGTACCTCTTGCT
CAAAGGCCCGGACGATGACAAGCACACCGTTTCGTGCGTGGAGCATTGCG
ACAAGTTTTGGGCGTTTCTGCAGAGCAAGGGTGTCAACTCGTACCGCTCC
GGCATTGTGCAGTGCATTGCAGAGAAGTGCAACATCCTTTTACCTGGCAG
CTACGACGACACGGCATTTTCTTCTTAA
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Synonyms
Publications