jgi.p|Nanoce1779_2|367069, mRNA_3582 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|367069
Unique Name	mRNA_3582
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	987
Alignment location	scaffold_6:703806..704792 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	367155
Track	FilteredModels2
ProteinId	367069

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:703806..704792 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|367069	gene_3582	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|367069	mRNA_3582-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3582	CDS_3582	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:703806..704792+
coding sequence from alignment at scaffold_6:703806..704792+

mRNA sequence

>mRNA_3582 ID=mRNA_3582|Name=jgi.p|Nanoce1779_2|367069|organism=Nannochloropsis oceanica|type=mRNA|length=987bp
GGCCACCTATCTAGGCACCTTTTAGCGGCTCTCCTGCGACTTCGTCTCGG
TATGCAAGTCAGAGCGGGGCTTCGACAGGATGCTGGTGTTCAGGGACTCG
CTGACGCATTGGGTGGAGGCCTTTCCAGCGCAGGGCACAACATCCGAGAC
TGCGGCAACGCTGCTCTATGACTATCTGATGCTATGGATGCCCTGAAGAG
CTGCTATCAGACGATGAACGGAACTTGGCACTTTGCCAACGAAGTAATCG
AAGAGCTGGGGCGCGTGATGGGCATGCGCCAGAGCTATAAGGTCCCTTAC
CGGCCGCAAGCAAATGGGCAGGTCGAACGGGCCAATCAAGCTGTCTTGAA
TATAGTCTCTAATGAGGCTCTGATTGGTTTTTATATGTTTTATATGTGCC
TTCGCTCACGCCTACAACACAAGCTTCAACACGGCCATCGGCGAGAGCCC
CTACTACTTGATCTACGGCCGCAGTCCGAGCTTGCCCACGGACGTCATAT
TCGACACGCCGCAATTAATCTACGAGAACATCTCCAACTACGCCAGTCAG
CTGCGGCTGGCGCACGCGGTGGCGCCCAATTGAACGAGGACCGGCGCGAC
GAGGCATGCATGCGCTCAGCCAAGTGCGACAAACCCATGGCATTCGAGGA
AGGCGACAAAGTCTGGATGTACTGCCCGAGAGCTGGTGACACCGGACTGC
CGGCACCCGAGAACTTTCAGCGGCAACTGCACGTGGAGCCGGAGGAGGTA
ATCCCGCCGTTGGACCGTGACGCAAAGCACAAGCAGCGCTATCGAATTCC
GCAGCACGAATAGTGCGAGCTCACGGCGGCGCAGCTAGCCCTGGTGGGGC
GCTACTTCAAGGACGGCAACGAATTCTTCGTCGTGGTCTAGGGAGCTCAA
GGCCAACACCGCGCGCAACGTTTTGTGTAAGAAACAGAAGGGCATTTTTA
TCGAGCAGGAGAAAAAGCAACTATTGCGGCGTCTGTC

protein sequence of jgi.p|Nanoce1779_2|367069

>mRNA_3582-protein ID=mRNA_3582-protein|Name=jgi.p|Nanoce1779_2|367069|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MDALKSCYQTMNGTWHFANEVIEELGRVMGMRQSYKVPYRPQANGQVERA
NQAVLNIVSNEALIGFYMFYMCLRSRLQHKLQHGHRREPLLLDLRPQSEL
AHGRHIRHAAINLREHLQLRQSAAAGARGGAQLNEDRRDEACMRSAKCDK
PMAFEEGDKVWMYCPRAGDTGLPAPENFQRQLHVEPEEVIPPLDRDAKHK
QRYRIPQHE*

mRNA from alignment at scaffold_6:703806..704792+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3582 ID=mRNA_3582|Name=jgi.p|Nanoce1779_2|367069|organism=Nannochloropsis oceanica|type=mRNA|length=987bp|location=Sequence derived from alignment at scaffold_6:703806..704792+ (Nannochloropsis oceanica)
GGCCACCTATCTAGGCACCTTTTAGCGGCTCTCCTGCGACTTCGTCTCGG
TATGCAAGTCAGAGCGGGGCTTCGACAGGATGCTGGTGTTCAGGGACTCG
CTGACGCATTGGGTGGAGGCCTTTCCAGCGCAGGGCACAACATCCGAGAC
TGCGGCAACGCTGCTCTATGACTATCTGATGCTATGGATGCCCTGAAGAG
CTGCTATCAGACGATGAACGGAACTTGGCACTTTGCCAACGAAGTAATCG
AAGAGCTGGGGCGCGTGATGGGCATGCGCCAGAGCTATAAGGTCCCTTAC
CGGCCGCAAGCAAATGGGCAGGTCGAACGGGCCAATCAAGCTGTCTTGAA
TATAGTCTCTAATGAGGCTCTGATTGGTTTTTATATGTTTTATATGTGCC
TTCGCTCACGCCTACAACACAAGCTTCAACACGGCCATCGGCGAGAGCCC
CTACTACTTGATCTACGGCCGCAGTCCGAGCTTGCCCACGGACGTCATAT
TCGACACGCCGCAATTAATCTACGAGAACATCTCCAACTACGCCAGTCAG
CTGCGGCTGGCGCACGCGGTGGCGCCCAATTGAACGAGGACCGGCGCGAC
GAGGCATGCATGCGCTCAGCCAAGTGCGACAAACCCATGGCATTCGAGGA
AGGCGACAAAGTCTGGATGTACTGCCCGAGAGCTGGTGACACCGGACTGC
CGGCACCCGAGAACTTTCAGCGGCAACTGCACGTGGAGCCGGAGGAGGTA
ATCCCGCCGTTGGACCGTGACGCAAAGCACAAGCAGCGCTATCGAATTCC
GCAGCACGAATAGTGCGAGCTCACGGCGGCGCAGCTAGCCCTGGTGGGGC
GCTACTTCAAGGACGGCAACGAATTCTTCGTCGTGGTCTAGGGAGCTCAA
GGCCAACACCGCGCGCAACGTTTTGTGTAAGAAACAGAAGGGCATTTTTA
TCGAGCAGGAGAAAAAGCAACTATTGCGGCGTCTGTC

Coding sequence (CDS) from alignment at scaffold_6:703806..704792+

>mRNA_3582 ID=mRNA_3582|Name=jgi.p|Nanoce1779_2|367069|organism=Nannochloropsis oceanica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_6:703806..704792+ (Nannochloropsis oceanica)
ATGGATGCCCTGAAGAGCTGCTATCAGACGATGAACGGAACTTGGCACTT
TGCCAACGAAGTAATCGAAGAGCTGGGGCGCGTGATGGGCATGCGCCAGA
GCTATAAGGTCCCTTACCGGCCGCAAGCAAATGGGCAGGTCGAACGGGCC
AATCAAGCTGTCTTGAATATAGTCTCTAATGAGGCTCTGATTGGTTTTTA
TATGTTTTATATGTGCCTTCGCTCACGCCTACAACACAAGCTTCAACACG
GCCATCGGCGAGAGCCCCTACTACTTGATCTACGGCCGCAGTCCGAGCTT
GCCCACGGACGTCATATTCGACACGCCGCAATTAATCTACGAGAACATCT
CCAACTACGCCAGTCAGCTGCGGCTGGCGCACGCGGTGGCGCCCAATTGA
ACGAGGACCGGCGCGACGAGGCATGCATGCGCTCAGCCAAGTGCGACAAA
CCCATGGCATTCGAGGAAGGCGACAAAGTCTGGATGTACTGCCCGAGAGC
TGGTGACACCGGACTGCCGGCACCCGAGAACTTTCAGCGGCAACTGCACG
TGGAGCCGGAGGAGGTAATCCCGCCGTTGGACCGTGACGCAAAGCACAAG
CAGCGCTATCGAATTCCGCAGCACGAATAG

Synonyms

Publications