jgi.p|Nanoce1779_2|582681, mRNA_3581 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582681
Unique Name	mRNA_3581
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2702
Alignment location	scaffold_6:702281..705084 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582767
Track	FilteredModels2
ProteinId	582681

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:702281..705084 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582681	gene_3581	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582681	mRNA_3581-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3581	CDS_3581	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:702281..705084-
coding sequence from alignment at scaffold_6:702281..705084-

mRNA sequence

>mRNA_3581 ID=mRNA_3581|Name=jgi.p|Nanoce1779_2|582681|organism=Nannochloropsis oceanica|type=mRNA|length=2702bp
CTTTCAGTATTCGTAGACCAGAGGACGGTGGTGAATTATGCTTTTTCTTG
ACCTGTCTCTCGAGCCACATGGCTTTCCTACGGAGAAGGGAATTACCAAC
TGATTATTCCTAACCACGAGACTGCCCCCGTCGGGACTCAAGAATTACCA
CCCACCAAAAGACATGACCAATTCCTCCACTTCCTCCAAGGACAGACGCC
GCAATAGTTGCTTTTTCTCCTGCTCGATAAAAATGCCCTTCTGTTTCTTA
CACAAAACGTTGCGCGCGGTGTTGGCCTTGAGCTCCCTAGACCACGACGA
AGAATTCGTTGCCGTCCTTGAAGTAGCGCCCCACCAGGGCTAGCTGCGCC
GCCGTGAGCTCGCACTATTCGTGCTGCGGAATTCGATAGCGCTGCTTGTG
CTTTGCGTCACGGTCCAACGGCGGGATTACCTCCTCCGGCTCCACGTGCA
GTTGCCGCTGAAAGTTCTCGGGTGCCGGCAGTCCGGTGTCACCAGCTCTC
GGGCAGTACATCCAGACTTTGTCGCCTTCCTCGAATGCCATGGGTTTGTC
GCACTTGGCTGAGCGCATGCATGCCTCGTCGCGCCGGTCCTCGTTCAATT
GGGCGCCACCGCGTGCGCCAGCCGCAGCTGACTGGCGTAGTTGGAGATGT
TCTCGTAGATTAATTGCGGCGTGTCGAATATGACGTCCGTGGGCAAGCTC
GGACTGCGGCCGTAGATCAAGTAGTAGGGGCTCTCGCCGATGGCCGTGTT
GAAGCTTGTGTTGTAGGCGTGAGCGAAGGCACATATAAAACATATAAAAA
CCAATCAGAGCCTCATTAGAGACTATATTCAAGACAGCTTGATTGGCCCG
TTCGACCTGCCCATTTGCTTGCGGCCGGTAAGGGACCTTATAGCTCTGGC
GCATGCCCATCACGCGCCCCAGCTCTTCGATTACTTCGTTGGCAAAGTGC
CAAGTTCCGTTCATCGTCTGATAGCAGCTCTTCAGGGCATCCATAGCATC
AGATAGTCATAGAGCAGCGTTGCCGCAGTCTCGGATGTTGTGCCCTGCGC
TGGAAAGGCCTCCACCCAATGCGTCAGCGAGTCCCTGAACACCAGCATCC
TGTCGAAGCCCCGCTCTGACTTGCATACCGAGACGAAGTCGCAGGAGAGC
CGCTAAAAGGTGCCTAGATAGGTGGCCTGCGCCCGGGTTCGTGCCGCGGT
CGCCTCGGTGGGTTGCGCCGTGTATGACACAGTTTACACGAGGCGTAATA
GAGCCGGACGTCCCGCGCCATGCCCGTCCAGATGTATTTCTCCCTGATGC
GCGCCAGCATCTTGATAAAGCCGAAGTGCCCGCCCATGGCTCCATCGTGG
TAGGTCTGCATGATCAATATCCGCAGGTGCTTGGGTACTACGATCAGCGC
CCGCGCGTCCCGCCAGGGCTTGCCGTGTGCTATGAGCATGAAATCTTTGT
CTTGCTCGCGCAGGAAGTACGCCTCCATCTCCCTCCTGACTCTCAACTGC
TTGGCGCTCAGTCAGCCGCTCGGACACTACACCCTTCTCGATAGCTGCCA
CTTGATCGGCCAGCTCCTCATCGATGCGTTGCGCCGCTCCCACGTCCGTT
GTCCAGCCCCACTCAGGTGCGTACTCATCCACTTCAGCCGCGCTTCTTGG
CTGCACATGCTCCTCCACAGCGCCCATGCTCTCGTCGTTTCTTTCGTTGT
CGATGTCGGCTGGCGGGGTGGAGGATTGGGCCGGTCAGGGAGGGGTATGA
TTGCTTCCTCAAGACCTTGGATGAAGGCGTCGTCAGCCGTGTCGTGCGGC
GTCCAATCCATTCGTGAAAGCACATCGGCGTTAATGTGCTTGAGGTCGGT
CCGGAACTCGATCTCGAGGTCGTCCTCCTTCAGACCCATGCTCCGCCGAT
GTAGCCGACCCGCCGCATCCTTGACTGTATCCAGATACTCCAGCGCGCGA
AGGTCCGTGCCGGCCGTAGATGTAGGTTCGCAATTTCTTGACGGCCCACA
CTACGGCCAGCGCCTCCTTGTGCGGAGGGCTGTACTTCTTCTCCGTCGCC
GGCAACGATAGACTTGCGTAGCAGATGACGTGCCTTTGTCCATCATTGTG
CATCAGGACTGCGCCCAGCCGTAGTTGCCCGCATCTGTGTAGAGCTTCTA
CCCCTTGTTGGGTTCTGGGAAGGCCAGCACTGGTGCCGAGATGAGCGCCT
GCTTGAGTTTGTCAAACGCCCCTTTTTGCGCCTTGCCCCAGTGCCAGCGC
GTGGTGTTGCACGTGAGATCATTGAGTGGTCCGGCGATGGTGGAGAAGCC
CTCGATGAAGCACCGGTAGTATGAGCATAGGCCCACGAATGCCCGCACGC
CGCGCAGGTTCCTGGTGTTAGGAAAATTCTTGACCGCCGATACTGCCTCC
GGGTTGGCCTTGATGCCATCCTTGGAGACGGTGAAGCCCAAAAACGTTGT
CTCATAGCGCGCGAACTTGCGCTTGGCCGGGGATACCGTCAGCCCAGCCG
CAATCAGCCTGCACCAAGGCCACGTCCCGCACGTGATCTGCTGTTTTGCT
GAAGACGCAGATGTCATCGAAGAACATATTCACTATTGACCACTTAAGTC
CCTTGAAGATCATGTCAGCTAGCCTGCTCCACAGCCTTGGGAAGTTCTTG
AGCCTGAGCGGTTTGCTAGCCGCAAAAAAGTTTTTTATGGGGACGTCATA
TG

protein sequence of jgi.p|Nanoce1779_2|582681

>mRNA_3581-protein ID=mRNA_3581-protein|Name=jgi.p|Nanoce1779_2|582681|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MINIRRCLGTTISARASRQGLPCAMSMKSLSCSRRKYASISLLTLNCLAL
SQPLGHYTLLDSCHLIGQLLIDALRRSHVRCPAPLRCVLIHFSRASWLHM
LLHSAHALVVSFVVDVGWRGGGLGRSGRGMIASSRPWMKASSAVSCGVQS
IRESTSALMCLRSVRNSISRSSSFRPMLRRCSRPAASLTVSRYSSARRSV
PAVDVGSQFLDGPHYGQRLLVRRAVLLLRRRQR*

mRNA from alignment at scaffold_6:702281..705084-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3581 ID=mRNA_3581|Name=jgi.p|Nanoce1779_2|582681|organism=Nannochloropsis oceanica|type=mRNA|length=2804bp|location=Sequence derived from alignment at scaffold_6:702281..705084- (Nannochloropsis oceanica)
CTTTCAGTATTCGTAGACCAGAGGACGGTGGTGAATTGTAAGTTTTATGA
AGAATCCAATACAATAGATAAGATAGCAAGCTAGAAAAGATAAGAAGATG
TTATGTGAGCGACTCATGGGTTTTAACATTTCTGCACAGATGCTTTTTCT
TGACCTGTCTCTCGAGCCACATGGCTTTCCTACGGAGAAGGGAATTACCA
ACTGATTATTCCTAACCACGAGACTGCCCCCGTCGGGACTCAAGAATTAC
CACCCACCAAAAGACATGACCAATTCCTCCACTTCCTCCAAGGACAGACG
CCGCAATAGTTGCTTTTTCTCCTGCTCGATAAAAATGCCCTTCTGTTTCT
TACACAAAACGTTGCGCGCGGTGTTGGCCTTGAGCTCCCTAGACCACGAC
GAAGAATTCGTTGCCGTCCTTGAAGTAGCGCCCCACCAGGGCTAGCTGCG
CCGCCGTGAGCTCGCACTATTCGTGCTGCGGAATTCGATAGCGCTGCTTG
TGCTTTGCGTCACGGTCCAACGGCGGGATTACCTCCTCCGGCTCCACGTG
CAGTTGCCGCTGAAAGTTCTCGGGTGCCGGCAGTCCGGTGTCACCAGCTC
TCGGGCAGTACATCCAGACTTTGTCGCCTTCCTCGAATGCCATGGGTTTG
TCGCACTTGGCTGAGCGCATGCATGCCTCGTCGCGCCGGTCCTCGTTCAA
TTGGGCGCCACCGCGTGCGCCAGCCGCAGCTGACTGGCGTAGTTGGAGAT
GTTCTCGTAGATTAATTGCGGCGTGTCGAATATGACGTCCGTGGGCAAGC
TCGGACTGCGGCCGTAGATCAAGTAGTAGGGGCTCTCGCCGATGGCCGTG
TTGAAGCTTGTGTTGTAGGCGTGAGCGAAGGCACATATAAAACATATAAA
AACCAATCAGAGCCTCATTAGAGACTATATTCAAGACAGCTTGATTGGCC
CGTTCGACCTGCCCATTTGCTTGCGGCCGGTAAGGGACCTTATAGCTCTG
GCGCATGCCCATCACGCGCCCCAGCTCTTCGATTACTTCGTTGGCAAAGT
GCCAAGTTCCGTTCATCGTCTGATAGCAGCTCTTCAGGGCATCCATAGCA
TCAGATAGTCATAGAGCAGCGTTGCCGCAGTCTCGGATGTTGTGCCCTGC
GCTGGAAAGGCCTCCACCCAATGCGTCAGCGAGTCCCTGAACACCAGCAT
CCTGTCGAAGCCCCGCTCTGACTTGCATACCGAGACGAAGTCGCAGGAGA
GCCGCTAAAAGGTGCCTAGATAGGTGGCCTGCGCCCGGGTTCGTGCCGCG
GTCGCCTCGGTGGGTTGCGCCGTGTATGACACAGTTTACACGAGGCGTAA
TAGAGCCGGACGTCCCGCGCCATGCCCGTCCAGATGTATTTCTCCCTGAT
GCGCGCCAGCATCTTGATAAAGCCGAAGTGCCCGCCCATGGCTCCATCGT
GGTAGGTCTGCATGATCAATATCCGCAGGTGCTTGGGTACTACGATCAGC
GCCCGCGCGTCCCGCCAGGGCTTGCCGTGTGCTATGAGCATGAAATCTTT
GTCTTGCTCGCGCAGGAAGTACGCCTCCATCTCCCTCCTGACTCTCAACT
GCTTGGCGCTCAGTCAGCCGCTCGGACACTACACCCTTCTCGATAGCTGC
CACTTGATCGGCCAGCTCCTCATCGATGCGTTGCGCCGCTCCCACGTCCG
TTGTCCAGCCCCACTCAGGTGCGTACTCATCCACTTCAGCCGCGCTTCTT
GGCTGCACATGCTCCTCCACAGCGCCCATGCTCTCGTCGTTTCTTTCGTT
GTCGATGTCGGCTGGCGGGGTGGAGGATTGGGCCGGTCAGGGAGGGGTAT
GATTGCTTCCTCAAGACCTTGGATGAAGGCGTCGTCAGCCGTGTCGTGCG
GCGTCCAATCCATTCGTGAAAGCACATCGGCGTTAATGTGCTTGAGGTCG
GTCCGGAACTCGATCTCGAGGTCGTCCTCCTTCAGACCCATGCTCCGCCG
ATGTAGCCGACCCGCCGCATCCTTGACTGTATCCAGATACTCCAGCGCGC
GAAGGTCCGTGCCGGCCGTAGATGTAGGTTCGCAATTTCTTGACGGCCCA
CACTACGGCCAGCGCCTCCTTGTGCGGAGGGCTGTACTTCTTCTCCGTCG
CCGGCAACGATAGACTTGCGTAGCAGATGACGTGCCTTTGTCCATCATTG
TGCATCAGGACTGCGCCCAGCCGTAGTTGCCCGCATCTGTGTAGAGCTTC
TACCCCTTGTTGGGTTCTGGGAAGGCCAGCACTGGTGCCGAGATGAGCGC
CTGCTTGAGTTTGTCAAACGCCCCTTTTTGCGCCTTGCCCCAGTGCCAGC
GCGTGGTGTTGCACGTGAGATCATTGAGTGGTCCGGCGATGGTGGAGAAG
CCCTCGATGAAGCACCGGTAGTATGAGCATAGGCCCACGAATGCCCGCAC
GCCGCGCAGGTTCCTGGTGTTAGGAAAATTCTTGACCGCCGATACTGCCT
CCGGGTTGGCCTTGATGCCATCCTTGGAGACGGTGAAGCCCAAAAACGTT
GTCTCATAGCGCGCGAACTTGCGCTTGGCCGGGGATACCGTCAGCCCAGC
CGCAATCAGCCTGCACCAAGGCCACGTCCCGCACGTGATCTGCTGTTTTG
CTGAAGACGCAGATGTCATCGAAGAACATATTCACTATTGACCACTTAAG
TCCCTTGAAGATCATGTCAGCTAGCCTGCTCCACAGCCTTGGGAAGTTCT
TGAGCCTGAGCGGTTTGCTAGCCGCAAAAAAGTTTTTTATGGGGACGTCA
TATG

Coding sequence (CDS) from alignment at scaffold_6:702281..705084-

>mRNA_3581 ID=mRNA_3581|Name=jgi.p|Nanoce1779_2|582681|organism=Nannochloropsis oceanica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_6:702281..705084- (Nannochloropsis oceanica)
ATGATCAATATCCGCAGGTGCTTGGGTACTACGATCAGCGCCCGCGCGTC
CCGCCAGGGCTTGCCGTGTGCTATGAGCATGAAATCTTTGTCTTGCTCGC
GCAGGAAGTACGCCTCCATCTCCCTCCTGACTCTCAACTGCTTGGCGCTC
AGTCAGCCGCTCGGACACTACACCCTTCTCGATAGCTGCCACTTGATCGG
CCAGCTCCTCATCGATGCGTTGCGCCGCTCCCACGTCCGTTGTCCAGCCC
CACTCAGGTGCGTACTCATCCACTTCAGCCGCGCTTCTTGGCTGCACATG
CTCCTCCACAGCGCCCATGCTCTCGTCGTTTCTTTCGTTGTCGATGTCGG
CTGGCGGGGTGGAGGATTGGGCCGGTCAGGGAGGGGTATGATTGCTTCCT
CAAGACCTTGGATGAAGGCGTCGTCAGCCGTGTCGTGCGGCGTCCAATCC
ATTCGTGAAAGCACATCGGCGTTAATGTGCTTGAGGTCGGTCCGGAACTC
GATCTCGAGGTCGTCCTCCTTCAGACCCATGCTCCGCCGATGTAGCCGAC
CCGCCGCATCCTTGACTGTATCCAGATACTCCAGCGCGCGAAGGTCCGTG
CCGGCCGTAGATGTAGGTTCGCAATTTCTTGACGGCCCACACTACGGCCA
GCGCCTCCTTGTGCGGAGGGCTGTACTTCTTCTCCGTCGCCGGCAACGAT
AG

Synonyms

Publications