Properties
| Property Name | Value |
|---|
| TranscriptId | 582766 |
| Track | FilteredModels2 |
| ProteinId | 582680 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:700063..702153 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3580 ID=mRNA_3580|Name=jgi.p|Nanoce1779_2|582680|organism=Nannochloropsis oceanica|type=mRNA|length=1991bp
ACGACAGGGATGCATGTGGCTGGTTGTTTCACTCCTTTTGCTTCTCTACC
ACCCGATCTCCTCCTCAACCGGTACTGCTCTTGTTCCTAGCTCCATCATG
TTCTGGCTGCTGCAATGCGCATGCTTTTGCGGAGGCGGCCGTGGACGAGC
AATACCCCGTGCACACGCGCTGCCATTAGAAGCCTTCGGCCATTTCACGT
CCACAGATCAAGTCCCACACGGATGTGCCATGCATGCTACATCCGTATCG
TCGTCATTCTCCGCTCTCCAAGACGACCTGAAAGCCATCGTAGGCAAGCA
ATTGGTGCCTGTCGCGCGCATGGACGTCAATGCCGAACGCTTCTTGGACC
GTTTTCAATTCCGCAAAATTTTTCTTGCACGCTTTGATATCGGTTCTCTG
GAGGCCCACGGCGAAGAGAGCATGGTGCGCCGCATCGTGCACGCGCATCT
GGTCGGACCAGAGGCCGAAGACGCGTTGTACCGGAGCTTGCTAGCCTCCC
TTTCCACTTTTCCCGACCCATGGGCTGCAACATCTGACCAAAGCATATTT
CAGCCTGACATAGCCAAGATCACGACGGCCAGCCAGCGCAACAGCCATTT
GGTGGCAGCCACGGCAGGACGGGCAGGTGTCATCAAGGCTTTGAAGCAAT
TAAATGCCAATCTGAAGACTCTTCGGGTAGAGAAGACAGAGAGAGAGGCA
CAGGAGCAAAGCGGCGGCAGTGATCTGAGCACGTTGCGAGCTAAGATCAA
GGATCGGCAAGCGCGCGTGGATGAGATGCAAATCAAACTTACTCGTTTTG
ATGCCCTGATCCAAGTGCTGACAGCAATAGAGGAGCGACTGATGGCCACC
AAGAGTCGCGTTATGGCAGAAAAGCGAGACCGGCAGAATGCGTTGAATGG
CAGCGATGACAGCTCCAATGGCAGGCGATTCGGCGTGAACAAGAATGTGC
GGCGCAACAGCCAGACATGGGGCAAAGCAGTGGAGAAACAAGGCAAGGAA
GCTTTGGAGGCCTGTTTGGGCGAGTGGAAGCAGGGGCAGGTGCAGCAGGG
TAGAAGCACCGGGAGGGATCCTTTCGTTTTGACGGGCGTGACGTTGCAGT
CCCTGCACTCGGAAGCGATGGTGGCATTGCGTCATGACATTGTCCAGCGA
CATGCCCCCCTCTACGACTGCACTCTCTGGCCCAAGGCTGAATTGGATGC
GCTGGTTGTGGCGCCCGCGCCCGAGGACCCGAGGCGTCTCCAAGTAGTGC
TTGCCGTGGAGATGAAGCGCAGCCTAGACGAGGTCTCCGTCGACTGCCTC
AAATTCCACCTGTTACTCGAAATTTGCCGACAGGCTGCACCAGAGTCCCT
GCGATTTTCTTCTTCCCCCTCTCTTCACCCAGGAGCGGTGAAATCCAAGC
AATTGACGAGCAAATCCTCCAAGTTCTCGACGGACAGCGGCTTTGTCCTG
GACTTCTCCTCTCTACGCCTGCCGGACGACGCCGTATACGTGACCAAAAG
AGGTGGCTCTATTGTCCATGCTGTTACAAAGCTCTTGTTTGAACAAGTGC
AGCTTGTGCGTAGCAAGAACGGAGGAGAAAAGGTCTGTAACGACGATGAA
GAAGTGCTCCGGCGTTTCTATGCGCCTGATTTCGTGTGGGACGACGAGGC
AGGAAGGAGGGCAGCAGCGGAGCAAAAGCGCGAGATGGTGCTAGATGTTC
TATTTCAACGCTTTTGTGCGCATGGTATTCACCGATTGCGGCAGCGGCTG
GAAGGTGTGGTGATGGTGCTGACGGGCAACTCCCTTGCTGACAGCAGCAC
AAGCCCTCAGCTCGGAAGCGTCATGGCCCTACACGTAGACCAGTCTGCGT
GGAAGGCACAAGGCAATGGTGAGCAGAGGCAAGCGTAAACGTGGACACCA
AAAAAATGTCTGCACCTGTGTATACTGAAAGCCAGGAATCAGAATAGGAA
AAAAAGTGTGTAATCACAAGAAAAAGGAAACCGATAAGTAC back to topprotein sequence of jgi.p|Nanoce1779_2|582680 >mRNA_3580-protein ID=mRNA_3580-protein|Name=jgi.p|Nanoce1779_2|582680|organism=Nannochloropsis oceanica|type=polypeptide|length=625bp
MWLVVSLLLLLYHPISSSTGTALVPSSIMFWLLQCACFCGGGRGRAIPRA
HALPLEAFGHFTSTDQVPHGCAMHATSVSSSFSALQDDLKAIVGKQLVPV
ARMDVNAERFLDRFQFRKIFLARFDIGSLEAHGEESMVRRIVHAHLVGPE
AEDALYRSLLASLSTFPDPWAATSDQSIFQPDIAKITTASQRNSHLVAAT
AGRAGVIKALKQLNANLKTLRVEKTEREAQEQSGGSDLSTLRAKIKDRQA
RVDEMQIKLTRFDALIQVLTAIEERLMATKSRVMAEKRDRQNALNGSDDS
SNGRRFGVNKNVRRNSQTWGKAVEKQGKEALEACLGEWKQGQVQQGRSTG
RDPFVLTGVTLQSLHSEAMVALRHDIVQRHAPLYDCTLWPKAELDALVVA
PAPEDPRRLQVVLAVEMKRSLDEVSVDCLKFHLLLEICRQAAPESLRFSS
SPSLHPGAVKSKQLTSKSSKFSTDSGFVLDFSSLRLPDDAVYVTKRGGSI
VHAVTKLLFEQVQLVRSKNGGEKVCNDDEEVLRRFYAPDFVWDDEAGRRA
AAEQKREMVLDVLFQRFCAHGIHRLRQRLEGVVMVLTGNSLADSSTSPQL
GSVMALHVDQSAWKAQGNGEQRQA* back to topmRNA from alignment at scaffold_6:700063..702153- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3580 ID=mRNA_3580|Name=jgi.p|Nanoce1779_2|582680|organism=Nannochloropsis oceanica|type=mRNA|length=2091bp|location=Sequence derived from alignment at scaffold_6:700063..702153- (Nannochloropsis oceanica)
ACGACAGGGATGCATGTGGCTGGTTGTTTCACTCCTTTTGCTTCTCTACC
ACCCGATCTCCTCCTCAACCGGTACTGCTCTTGTTCCTAGCTCCATCATG
TTCTGGCTGCTGCAATGCGCATGCTTTTGCGGAGGCGGCCGTGGACGAGC
AATACCCCGTGCACACGCGCTGCCATTAGAAGCCTTCGGCCATTTCACGT
CCACAGATCAAGTCCCACACGGATGTGCCATGCATGCTACATCCGTATCG
TCGTCATTCTCCGCTCTCCAAGACGACCTGAAAGCCATCGTAGGCAAGCA
ATTGGTGCCTGTCGCGCGCATGGACGTCAATGCCGAACGCTTCTTGGACC
GTTTTCAATTCCGCAAAATTTTTCTTGCACGCTTTGATATCGGTTCTCTG
GAGGCCCACGGCGAAGAGAGCATGGTGCGCCGCATCGTGCACGCGCATCT
GGTCGGACCAGAGGCCGAAGACGCGTTGTACCGGAGCTTGCTAGCCTCCC
TTTCCACTTTTCCCGACCCATGGGCTGCAACATCTGACCAAAGCATATTT
CAGCCTGACATAGCCAAGATCACGACGGCCAGCCAGCGCAACAGCCATTT
GGTGGCAGGTACTTAGTAGAAGAGGTGGGAGACTAGCATTTCGAAACCTG
GTAAGCTCAAGACACATACAACCCACTTTCTTCCATCCTCATTCTCTACC
ATGAACAGCCACGGCAGGACGGGCAGGTGTCATCAAGGCTTTGAAGCAAT
TAAATGCCAATCTGAAGACTCTTCGGGTAGAGAAGACAGAGAGAGAGGCA
CAGGAGCAAAGCGGCGGCAGTGATCTGAGCACGTTGCGAGCTAAGATCAA
GGATCGGCAAGCGCGCGTGGATGAGATGCAAATCAAACTTACTCGTTTTG
ATGCCCTGATCCAAGTGCTGACAGCAATAGAGGAGCGACTGATGGCCACC
AAGAGTCGCGTTATGGCAGAAAAGCGAGACCGGCAGAATGCGTTGAATGG
CAGCGATGACAGCTCCAATGGCAGGCGATTCGGCGTGAACAAGAATGTGC
GGCGCAACAGCCAGACATGGGGCAAAGCAGTGGAGAAACAAGGCAAGGAA
GCTTTGGAGGCCTGTTTGGGCGAGTGGAAGCAGGGGCAGGTGCAGCAGGG
TAGAAGCACCGGGAGGGATCCTTTCGTTTTGACGGGCGTGACGTTGCAGT
CCCTGCACTCGGAAGCGATGGTGGCATTGCGTCATGACATTGTCCAGCGA
CATGCCCCCCTCTACGACTGCACTCTCTGGCCCAAGGCTGAATTGGATGC
GCTGGTTGTGGCGCCCGCGCCCGAGGACCCGAGGCGTCTCCAAGTAGTGC
TTGCCGTGGAGATGAAGCGCAGCCTAGACGAGGTCTCCGTCGACTGCCTC
AAATTCCACCTGTTACTCGAAATTTGCCGACAGGCTGCACCAGAGTCCCT
GCGATTTTCTTCTTCCCCCTCTCTTCACCCAGGAGCGGTGAAATCCAAGC
AATTGACGAGCAAATCCTCCAAGTTCTCGACGGACAGCGGCTTTGTCCTG
GACTTCTCCTCTCTACGCCTGCCGGACGACGCCGTATACGTGACCAAAAG
AGGTGGCTCTATTGTCCATGCTGTTACAAAGCTCTTGTTTGAACAAGTGC
AGCTTGTGCGTAGCAAGAACGGAGGAGAAAAGGTCTGTAACGACGATGAA
GAAGTGCTCCGGCGTTTCTATGCGCCTGATTTCGTGTGGGACGACGAGGC
AGGAAGGAGGGCAGCAGCGGAGCAAAAGCGCGAGATGGTGCTAGATGTTC
TATTTCAACGCTTTTGTGCGCATGGTATTCACCGATTGCGGCAGCGGCTG
GAAGGTGTGGTGATGGTGCTGACGGGCAACTCCCTTGCTGACAGCAGCAC
AAGCCCTCAGCTCGGAAGCGTCATGGCCCTACACGTAGACCAGTCTGCGT
GGAAGGCACAAGGCAATGGTGAGCAGAGGCAAGCGTAAACGTGGACACCA
AAAAAATGTCTGCACCTGTGTATACTGAAAGCCAGGAATCAGAATAGGAA
AAAAAGTGTGTAATCACAAGAAAAAGGAAACCGATAAGTAC back to topCoding sequence (CDS) from alignment at scaffold_6:700063..702153- >mRNA_3580 ID=mRNA_3580|Name=jgi.p|Nanoce1779_2|582680|organism=Nannochloropsis oceanica|type=CDS|length=3750bp|location=Sequence derived from alignment at scaffold_6:700063..702153- (Nannochloropsis oceanica)
CCACGGCAGGACGGGCAGGTGTCATCAAGGCTTTGAAGCAATTAAATGCC
AATCTGAAGACTCTTCGGGTAGAGAAGACAGAGAGAGAGGCACAGGAGCA
AAGCGGCGGCAGTGATCTGAGCACGTTGCGAGCTAAGATCAAGGATCGGC
AAGCGCGCGTGGATGAGATGCAAATCAAACTTACTCGTTTTGATGCCCTG
ATCCAAGTGCTGACAGCAATAGAGGAGCGACTGATGGCCACCAAGAGTCG
CGTTATGGCAGAAAAGCGAGACCGGCAGAATGCGTTGAATGGCAGCGATG
ACAGCTCCAATGGCAGGCGATTCGGCGTGAACAAGAATGTGCGGCGCAAC
AGCCAGACATGGGGCAAAGCAGTGGAGAAACAAGGCAAGGAAGCTTTGGA
GGCCTGTTTGGGCGAGTGGAAGCAGGGGCAGGTGCAGCAGGGTAGAAGCA
CCGGGAGGGATCCTTTCGTTTTGACGGGCGTGACGTTGCAGTCCCTGCAC
TCGGAAGCGATGGTGGCATTGCGTCATGACATTGTCCAGCGACATGCCCC
CCTCTACGACTGCACTCTCTGGCCCAAGGCTGAATTGGATGCGCTGGTTG
TGGCGCCCGCGCCCGAGGACCCGAGGCGTCTCCAAGTAGTGCTTGCCGTG
GAGATGAAGCGCAGCCTAGACGAGGTCTCCGTCGACTGCCTCAAATTCCA
CCTGTTACTCGAAATTTGCCGACAGGCTGCACCAGAGTCCCTGCGATTTT
CTTCTTCCCCCTCTCTTCACCCAGGAGCGGTGAAATCCAAGCAATTGACG
AGCAAATCCTCCAAGTTCTCGACGGACAGCGGCTTTGTCCTGGACTTCTC
CTCTCTACGCCTGCCGGACGACGCCGTATACGTGACCAAAAGAGGTGGCT
CTATTGTCCATGCTGTTACAAAGCTCTTGTTTGAACAAGTGCAGCTTGTG
CGTAGCAAGAACGGAGGAGAAAAGGTCTGTAACGACGATGAAGAAGTGCT
CCGGCGTTTCTATGCGCCTGATTTCGTGTGGGACGACGAGGCAGGAAGGA
GGGCAGCAGCGGAGCAAAAGCGCGAGATGGTGCTAGATGTTCTATTTCAA
CGCTTTTGTGCGCATGGTATTCACCGATTGCGGCAGCGGCTGGAAGGTGT
GGTGATGGTGCTGACGGGCAACTCCCTTGCTGACAGCAGCACAAGCCCTC
AGCTCGGAAGCGTCATGGCCCTACACGTAGACCAGTCTGCGTGGAAGGCA
CAAGGCAATGGTGAGCAGAGGCAAGCGTAAATGTGGCTGGTTGTTTCACT
CCTTTTGCTTCTCTACCACCCGATCTCCTCCTCAACCGGTACTGCTCTTG
TTCCTAGCTCCATCATGTTCTGGCTGCTGCAATGCGCATGCTTTTGCGGA
GGCGGCCGTGGACGAGCAATACCCCGTGCACACGCGCTGCCATTAGAAGC
CTTCGGCCATTTCACGTCCACAGATCAAGTCCCACACGGATGTGCCATGC
ATGCTACATCCGTATCGTCGTCATTCTCCGCTCTCCAAGACGACCTGAAA
GCCATCGTAGGCAAGCAATTGGTGCCTGTCGCGCGCATGGACGTCAATGC
CGAACGCTTCTTGGACCGTTTTCAATTCCGCAAAATTTTTCTTGCACGCT
TTGATATCGGTTCTCTGGAGGCCCACGGCGAAGAGAGCATGGTGCGCCGC
ATCGTGCACGCGCATCTGGTCGGACCAGAGGCCGAAGACGCGTTGTACCG
GAGCTTGCTAGCCTCCCTTTCCACTTTTCCCGACCCATGGGCTGCAACAT
CTGACCAAAGCATATTTCAGCCTGACATAGCCAAGATCACGACGGCCAGC
CAGCGCAACAGCCATTTGGTGGCAGCCACGGCAGGACGGGCAGGTGTCAT
CAAGGCTTTGAAGCAATTAAATGCCAATCTGAAGACTCTTCGGGTAGAGA
AGACAGAGAGAGAGGCACAGGAGCAAAGCGGCGGCAGTGATCTGAGCACG
TTGCGAGCTAAGATCAAGGATCGGCAAGCGCGCGTGGATGAGATGCAAAT
CAAACTTACTCGTTTTGATGCCCTGATCCAAGTGCTGACAGCAATAGAGG
AGCGACTGATGGCCACCAAGAGTCGCGTTATGGCAGAAAAGCGAGACCGG
CAGAATGCGTTGAATGGCAGCGATGACAGCTCCAATGGCAGGCGATTCGG
CGTGAACAAGAATGTGCGGCGCAACAGCCAGACATGGGGCAAAGCAGTGG
AGAAACAAGGCAAGGAAGCTTTGGAGGCCTGTTTGGGCGAGTGGAAGCAG
GGGCAGGTGCAGCAGGGTAGAAGCACCGGGAGGGATCCTTTCGTTTTGAC
GGGCGTGACGTTGCAGTCCCTGCACTCGGAAGCGATGGTGGCATTGCGTC
ATGACATTGTCCAGCGACATGCCCCCCTCTACGACTGCACTCTCTGGCCC
AAGGCTGAATTGGATGCGCTGGTTGTGGCGCCCGCGCCCGAGGACCCGAG
GCGTCTCCAAGTAGTGCTTGCCGTGGAGATGAAGCGCAGCCTAGACGAGG
TCTCCGTCGACTGCCTCAAATTCCACCTGTTACTCGAAATTTGCCGACAG
GCTGCACCAGAGTCCCTGCGATTTTCTTCTTCCCCCTCTCTTCACCCAGG
AGCGGTGAAATCCAAGCAATTGACGAGCAAATCCTCCAAGTTCTCGACGG
ACAGCGGCTTTGTCCTGGACTTCTCCTCTCTACGCCTGCCGGACGACGCC
GTATACGTGACCAAAAGAGGTGGCTCTATTGTCCATGCTGTTACAAAGCT
CTTGTTTGAACAAGTGCAGCTTGTGCGTAGCAAGAACGGAGGAGAAAAGG
TCTGTAACGACGATGAAGAAGTGCTCCGGCGTTTCTATGCGCCTGATTTC
GTGTGGGACGACGAGGCAGGAAGGAGGGCAGCAGCGGAGCAAAAGCGCGA
GATGGTGCTAGATGTTCTATTTCAACGCTTTTGTGCGCATGGTATTCACC
GATTGCGGCAGCGGCTGGAAGGTGTGGTGATGGTGCTGACGGGCAACTCC
CTTGCTGACAGCAGCACAAGCCCTCAGCTCGGAAGCGTCATGGCCCTACA
CGTAGACCAGTCTGCGTGGAAGGCACAAGGCAATGGTGAGCAGAGGCAAG
CGTAAATGTGGCTGGTTGTTTCACTCCTTTTGCTTCTCTACCACCCGATC
TCCTCCTCAACCGGTACTGCTCTTGTTCCTAGCTCCATCATGTTCTGGCT
GCTGCAATGCGCATGCTTTTGCGGAGGCGGCCGTGGACGAGCAATACCCC
GTGCACACGCGCTGCCATTAGAAGCCTTCGGCCATTTCACGTCCACAGAT
CAAGTCCCACACGGATGTGCCATGCATGCTACATCCGTATCGTCGTCATT
CTCCGCTCTCCAAGACGACCTGAAAGCCATCGTAGGCAAGCAATTGGTGC
CTGTCGCGCGCATGGACGTCAATGCCGAACGCTTCTTGGACCGTTTTCAA
TTCCGCAAAATTTTTCTTGCACGCTTTGATATCGGTTCTCTGGAGGCCCA
CGGCGAAGAGAGCATGGTGCGCCGCATCGTGCACGCGCATCTGGTCGGAC
CAGAGGCCGAAGACGCGTTGTACCGGAGCTTGCTAGCCTCCCTTTCCACT
TTTCCCGACCCATGGGCTGCAACATCTGACCAAAGCATATTTCAGCCTGA
CATAGCCAAGATCACGACGGCCAGCCAGCGCAACAGCCATTTGGTGGCAG back to top
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