jgi.p|Nanoce1779_2|625109, mRNA_3579 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|625109
Unique Name	mRNA_3579
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1551
Alignment location	scaffold_6:698468..700064 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	625195
Track	FilteredModels2
ProteinId	625109

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:698468..700064 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|625109	gene_3579	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|625109	mRNA_3579-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3579	CDS_3579	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:698468..700064+
coding sequence from alignment at scaffold_6:698468..700064+

mRNA sequence

>mRNA_3579 ID=mRNA_3579|Name=jgi.p|Nanoce1779_2|625109|organism=Nannochloropsis oceanica|type=mRNA|length=1551bp
CAGCACCTTGCCCGCCGGCTTCCCCACACCGCGCAACGCACGGGGTCTTT
TTCACCCAACGCACGCGCACTCGGGTAACATGGACCTCCTCAAATGTCAG
ACATGTGGCCTGGGATTCGATTCATCCGTCGCTCACAAAGAGCACTATCG
CATGGAGCTCCACCGATACAATCTGAAGCGCCGCACCAACGACCTGGGGC
CTGTCAGTGAAACTGAATATCAACGCCGCAAAGCCGCCGCCCAGAGCTTG
GCTGGGATGAGCAAATCGACTACCGAGGCCTTTCACGCTAAATGCCATCT
CTGCAACCGCTCCTTTGCCTCTAAGGCCACGCTGAGCCAGCATCTCAAGT
CCCGCAAGCACCTCACCATGGCGGAGGGCGACAACGGTGGTACCCCCACC
AAGGTAAAAGCTACTGTAGCGCCCTCCACCCCAACGACGATCAAGGTACC
CGGCTCTATGGATGAGGCGGCCATGGACGAGGCCAGCAATAAGGCAGGGG
AGGAGGAAGGCGGGGCTGCTGCACCGGTAGACCTGAGCCCTGAGGTTTGC
ATCTTTTGCAACGAGCGATGCCCGAGCGTGGAGTCAACTGTGTTGCACAT
GTGGAAGCAGCATGGTTTTCACTTACCTGATGGGGAGTATCTGGTGGACG
TGCATGGTTTGCTGCGATACTGCGCGGAGAAGGTGAAGGTTGGCTGTTTG
TGTCTGTATTGTAATGGTAAGGGTAAGGGGTTTCTGACGGCTCGGGACGT
GCAGCGACACATGCATTCCAAGAGCCACTGCAAGCTCTTGTATGAGGAGG
GAGAAGATCTTCATGAATTTCGTCTTTTTTATGATTTTAGTGCCTCGCAT
GCCCTCCCTCCGTGTAGCAAGAAGATGACAAGGGGCAAGTTTAAGGCGCA
GGAGGATGGGATGGATGACGACGAGCAATCACTAGAGACGGTGGATTCGG
ACTATGAAGAGGTGAGCGGTGATGGCGACGAGGGCATGGAAGCTGATAAG
GGAGAGGACGAGGACGACGAGGACGAGGATGTGGAGCAAATGCTGCGCCA
GATGGCTTTGCAAGTCTCGGAGTTGGGGGAGTTGATGCTACCGGATGGAC
GGTGCTTGGGCCGCCGTGAGTATCAACGGTATTACAAGCAGCGGTATCGT
CCCGAGGACGTCCGATCGTCGTTGGTGGCGTCGAAGCATGAGTCAGCTGG
GCGGTTGTGGCCAGGAATGGAGAGCAATGCGGTTGTGAAGGCGGGAGGGA
CAGGGAGCTTGATGGCGGCGCGGAAGGCGGTGATGAAGGTAACGGCGGCG
GCACGACGGGTTCATGATAAATACAGGTTACGGAAGGAGATCAGCACAAA
TAAGTTCCACAAGCGGCCTCAGATTGACGGCTAGAGTGTGAGTGTTTGTA
TTTGTGTTTGTGTACTGAGACGGACGCCTTAGGAGGAAGGTGGACGAGAA
CAAAGATATTAGATAAATACAAGCGAAGAGGAGTGCCAAAAAAGCAAGCA
AGAGAGTGTCCTCCATTTTCCGGAAAGAAGAAGAAAAATGATGAAAACTG
T

protein sequence of jgi.p|Nanoce1779_2|625109

>mRNA_3579-protein ID=mRNA_3579-protein|Name=jgi.p|Nanoce1779_2|625109|organism=Nannochloropsis oceanica|type=polypeptide|length=435bp
MDLLKCQTCGLGFDSSVAHKEHYRMELHRYNLKRRTNDLGPVSETEYQRR
KAAAQSLAGMSKSTTEAFHAKCHLCNRSFASKATLSQHLKSRKHLTMAEG
DNGGTPTKVKATVAPSTPTTIKVPGSMDEAAMDEASNKAGEEEGGAAAPV
DLSPEVCIFCNERCPSVESTVLHMWKQHGFHLPDGEYLVDVHGLLRYCAE
KVKVGCLCLYCNGKGKGFLTARDVQRHMHSKSHCKLLYEEGEDLHEFRLF
YDFSASHALPPCSKKMTRGKFKAQEDGMDDDEQSLETVDSDYEEVSGDGD
EGMEADKGEDEDDEDEDVEQMLRQMALQVSELGELMLPDGRCLGRREYQR
YYKQRYRPEDVRSSLVASKHESAGRLWPGMESNAVVKAGGTGSLMAARKA
VMKVTAAARRVHDKYRLRKEISTNKFHKRPQIDG*

mRNA from alignment at scaffold_6:698468..700064+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3579 ID=mRNA_3579|Name=jgi.p|Nanoce1779_2|625109|organism=Nannochloropsis oceanica|type=mRNA|length=1597bp|location=Sequence derived from alignment at scaffold_6:698468..700064+ (Nannochloropsis oceanica)
CAGCACCTTGCCCGCCGGCTTCCCCACACCGCGCAACGCACGGGGTCTTT
TTCACCCAACGCACGCGCACTCGGGTAACATGGACCTCCTCAAATGTCAG
ACATGTGGCCTGGGATTCGATTCATCCGTCGCTCACAAAGAGCACTATCG
CATGGAGCTCCACCGATACAATCTGAAGCGCCGCACCAACGACCTGGGGC
CTGTCAGTGAAACTGAATATCAACGCCGCAAAGCCGCCGCCCAGAGCTTG
GCTGGGATGAGCAAATCGACTACCGAGGCCTTTCACGCTAAATGCCATCT
CTGCAACCGCTCCTTTGCCTCTAAGGCCACGCTGAGCCAGCATCTCAAGT
CCCGCAAGCACCTCACCATGGCGGAGGGCGACAACGGTGGTACCCCCACC
AAGGTAAAAGCTACTGTAGCGCCCTCCACCCCAACGACGATCAAGGTACC
CGGCTCTATGGATGAGGCGGCCATGGACGAGGCCAGCAATAAGGCAGGGG
AGGAGGAAGGCGGGGCTGCTGCACCGGTAGACCTGAGCCCTGAGGTTTGC
ATCTTTTGCAACGAGCGATGCCCGAGCGTGGAGTCAACTGTGTTGCACAT
GTGGAAGCAGCATGGTTTTCACTTACCTGATGGGGAGTATCTGGTGGACG
TGCATGGTTTGCTGCGATACTGCGCGGAGAAGGTGAAGGTTGGCTGTTTG
TGTCTGTATTGTAATGGTAAGGGTAAGGGGTTTCTGACGGCTCGGGACGT
GCAGCGACACATGCATTCCAAGAGCCACTGCAAGCTCTTGTATGAGGAGG
GAGAAGATCTTCATGAATTTCGTCTTTTTTATGATTTTAGTGCCTCGCAT
GCCCTCCCTCCGTGTAGCAAGAAGATGACAAGGGGCAAGTTTAAGGCGCA
GGAGGATGGGATGGATGACGACGAGCAATCACTAGAGACGGTGGATTCGG
ACTATGAAGAGGTGAGCGGTGATGGCGACGAGGGCATGGAAGCTGATAAG
GGAGAGGACGAGGACGACGAGGACGAGGATGTGGAGCAAATGCTGCGCCA
GATGGCTTTGCAAGTCTCGGAGTTGGGGGAGTTGATGCTACCGGATGGAC
GGTGCTTGGGCCGCCGTGAGTATCAACGGTATTACAAGCAGCGGTATCGT
CCCGAGGACGTCCGATCGTCGTTGGTGGCGTCGAAGCATGAGTCAGCTGG
GCGGTTGTGGCCAGGAATGGAGAGCAATGCGGTTGTGAAGGCGGGAGGGA
CAGGGAGCTTGATGGTGCGTGGTGGGGCGGGGGGGGGAGGGGTTATGGGG
GCCTGATAAGGCGGCGCGGAAGGCGGTGATGAAGGTAACGGCGGCGGCAC
GACGGGTTCATGATAAATACAGGTTACGGAAGGAGATCAGCACAAATAAG
TTCCACAAGCGGCCTCAGATTGACGGCTAGAGTGTGAGTGTTTGTATTTG
TGTTTGTGTACTGAGACGGACGCCTTAGGAGGAAGGTGGACGAGAACAAA
GATATTAGATAAATACAAGCGAAGAGGAGTGCCAAAAAAGCAAGCAAGAG
AGTGTCCTCCATTTTCCGGAAAGAAGAAGAAAAATGATGAAAACTGT

Coding sequence (CDS) from alignment at scaffold_6:698468..700064+

>mRNA_3579 ID=mRNA_3579|Name=jgi.p|Nanoce1779_2|625109|organism=Nannochloropsis oceanica|type=CDS|length=2610bp|location=Sequence derived from alignment at scaffold_6:698468..700064+ (Nannochloropsis oceanica)
ATGGACCTCCTCAAATGTCAGACATGTGGCCTGGGATTCGATTCATCCGT
CGCTCACAAAGAGCACTATCGCATGGAGCTCCACCGATACAATCTGAAGC
GCCGCACCAACGACCTGGGGCCTGTCAGTGAAACTGAATATCAACGCCGC
AAAGCCGCCGCCCAGAGCTTGGCTGGGATGAGCAAATCGACTACCGAGGC
CTTTCACGCTAAATGCCATCTCTGCAACCGCTCCTTTGCCTCTAAGGCCA
CGCTGAGCCAGCATCTCAAGTCCCGCAAGCACCTCACCATGGCGGAGGGC
GACAACGGTGGTACCCCCACCAAGGTAAAAGCTACTGTAGCGCCCTCCAC
CCCAACGACGATCAAGGTACCCGGCTCTATGGATGAGGCGGCCATGGACG
AGGCCAGCAATAAGGCAGGGGAGGAGGAAGGCGGGGCTGCTGCACCGGTA
GACCTGAGCCCTGAGGTTTGCATCTTTTGCAACGAGCGATGCCCGAGCGT
GGAGTCAACTGTGTTGCACATGTGGAAGCAGCATGGTTTTCACTTACCTG
ATGGGGAGTATCTGGTGGACGTGCATGGTTTGCTGCGATACTGCGCGGAG
AAGGTGAAGGTTGGCTGTTTGTGTCTGTATTGTAATGGTAAGGGTAAGGG
GTTTCTGACGGCTCGGGACGTGCAGCGACACATGCATTCCAAGAGCCACT
GCAAGCTCTTGTATGAGGAGGGAGAAGATCTTCATGAATTTCGTCTTTTT
TATGATTTTAGTGCCTCGCATGCCCTCCCTCCGTGTAGCAAGAAGATGAC
AAGGGGCAAGTTTAAGGCGCAGGAGGATGGGATGGATGACGACGAGCAAT
CACTAGAGACGGTGGATTCGGACTATGAAGAGGTGAGCGGTGATGGCGAC
GAGGGCATGGAAGCTGATAAGGGAGAGGACGAGGACGACGAGGACGAGGA
TGTGGAGCAAATGCTGCGCCAGATGGCTTTGCAAGTCTCGGAGTTGGGGG
AGTTGATGCTACCGGATGGACGGTGCTTGGGCCGCCGTGAGTATCAACGG
TATTACAAGCAGCGGTATCGTCCCGAGGACGTCCGATCGTCGTTGGTGGC
GTCGAAGCATGAGTCAGCTGGGCGGTTGTGGCCAGGAATGGAGAGCAATG
CGGTTGTGAAGGCGGGAGGGACAGGGAGCTTGATGGCGGCGCGGAAGGCG
GTGATGAAGGTAACGGCGGCGGCACGACGGGTTCATGATAAATACAGGTT
ACGGAAGGAGATCAGCACAAATAAGTTCCACAAGCGGCCTCAGATTGACG
GCTAGATGGACCTCCTCAAATGTCAGACATGTGGCCTGGGATTCGATTCA
TCCGTCGCTCACAAAGAGCACTATCGCATGGAGCTCCACCGATACAATCT
GAAGCGCCGCACCAACGACCTGGGGCCTGTCAGTGAAACTGAATATCAAC
GCCGCAAAGCCGCCGCCCAGAGCTTGGCTGGGATGAGCAAATCGACTACC
GAGGCCTTTCACGCTAAATGCCATCTCTGCAACCGCTCCTTTGCCTCTAA
GGCCACGCTGAGCCAGCATCTCAAGTCCCGCAAGCACCTCACCATGGCGG
AGGGCGACAACGGTGGTACCCCCACCAAGGTAAAAGCTACTGTAGCGCCC
TCCACCCCAACGACGATCAAGGTACCCGGCTCTATGGATGAGGCGGCCAT
GGACGAGGCCAGCAATAAGGCAGGGGAGGAGGAAGGCGGGGCTGCTGCAC
CGGTAGACCTGAGCCCTGAGGTTTGCATCTTTTGCAACGAGCGATGCCCG
AGCGTGGAGTCAACTGTGTTGCACATGTGGAAGCAGCATGGTTTTCACTT
ACCTGATGGGGAGTATCTGGTGGACGTGCATGGTTTGCTGCGATACTGCG
CGGAGAAGGTGAAGGTTGGCTGTTTGTGTCTGTATTGTAATGGTAAGGGT
AAGGGGTTTCTGACGGCTCGGGACGTGCAGCGACACATGCATTCCAAGAG
CCACTGCAAGCTCTTGTATGAGGAGGGAGAAGATCTTCATGAATTTCGTC
TTTTTTATGATTTTAGTGCCTCGCATGCCCTCCCTCCGTGTAGCAAGAAG
ATGACAAGGGGCAAGTTTAAGGCGCAGGAGGATGGGATGGATGACGACGA
GCAATCACTAGAGACGGTGGATTCGGACTATGAAGAGGTGAGCGGTGATG
GCGACGAGGGCATGGAAGCTGATAAGGGAGAGGACGAGGACGACGAGGAC
GAGGATGTGGAGCAAATGCTGCGCCAGATGGCTTTGCAAGTCTCGGAGTT
GGGGGAGTTGATGCTACCGGATGGACGGTGCTTGGGCCGCCGTGAGTATC
AACGGTATTACAAGCAGCGGTATCGTCCCGAGGACGTCCGATCGTCGTTG
GTGGCGTCGAAGCATGAGTCAGCTGGGCGGTTGTGGCCAGGAATGGAGAG
CAATGCGGTTGTGAAGGCGGGAGGGACAGGGAGCTTGATGGCGGCGCGGA
AGGCGGTGATGAAGGTAACGGCGGCGGCACGACGGGTTCATGATAAATAC
AGGTTACGGAAGGAGATCAGCACAAATAAGTTCCACAAGCGGCCTCAGAT
TGACGGCTAG

Synonyms

Publications