jgi.p|Nanoce1779_2|366204, mRNA_3577 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|366204
Unique NamemRNA_3577
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length832
Alignment locationscaffold_6:693107..694150 -

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Properties
Property NameValue
TranscriptId366290
TrackFilteredModels2
ProteinId366204
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:693107..694150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|366204gene_3577Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|366204mRNA_3577-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3577CDS_3577Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3577 ID=mRNA_3577|Name=jgi.p|Nanoce1779_2|366204|organism=Nannochloropsis oceanica|type=mRNA|length=832bp
GACTCTTGCAGGCAGCGTCCCTAGATTTCTGATTGTATACTCCAAAGGGA
AAGGTTTGCCTTCAATTGCCACCTCATCCACCACGTTCTTGATTTAAGAA
AGGGTGGGACATGAAAGGAGAATATGAGAAAGACGCGAAAAAAGAAACTG
AATTTACGCTTTCTTATTTACGGTTTGTTATACGTAAGGGCACGTCTCAA
TTCCTCGTCAGCGTGGAACCGGCGCGAAATCCTCCCCCAAGCCGTAGCTC
AAGAAAGGCTTCCTTCCGCAATGTGTTTTCACATCAATCTTCCTCTGTTA
TACAGCCAATACTTCGTCGACCGAAGCCTCCGATTGGGGCATGGCAGAGA
GTTAGACAAGCACACGAACCACACTCGCCCCGCTCACACATATCCCATCG
ACATACAGGCAAGGAGACTGCAACCATACTATACGAAAACTGCACCAAAA
ACCCATGCAGCCTGGATAAATTCATTACACATACTGCTATACATGCCCGG
ACAACAGTCATTAGTCGCTGGTGCTACCATCAAGACGCATCGCATGCCCT
CCTAGGCATTCCTCCTAACCCTCAACTAAGGACACTTTCATTTCCTCATC
ACAGCCACACATTGCACTGTCAATCACATGCACAGTTATGTAAGCCCTTC
ACATTTCGTAGGTTATGCCAGACTCCCTCAGCTTACCTTCAAAACAGAAA
TGAAAGCGGCAGGTTGCTGTCCCTCTTGGCCGAATACTAGAGCGAGGAAG
AGGAGAGGGGCAAGCAGGCTTGCCCGTCCTGCCGTTGCCAACATACCTTC
CTTCTGCCTCCATGCACACAACCACAGGCTTC
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protein sequence of jgi.p|Nanoce1779_2|366204

>mRNA_3577-protein ID=mRNA_3577-protein|Name=jgi.p|Nanoce1779_2|366204|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MKGEYEKDAKKETEFTLSYLRFVIRKGTSQFLVSVEPARNPPPSRSSRKA
SFRNVFSHQSSSVIQPILRRPKPPIGAWQRVRQAHEPHSPRSHISHRHTG
KETATILYENCTKNPCSLDKFITHTAIHARTTVISRWCYHQDASHALLGI
PPNPQLRTLSFPHHSHTLHCQSHAQLCKPFTFRRLCQTPSAYLQNRNESG
RLLSLLAEY*
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mRNA from alignment at scaffold_6:693107..694150-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3577 ID=mRNA_3577|Name=jgi.p|Nanoce1779_2|366204|organism=Nannochloropsis oceanica|type=mRNA|length=1044bp|location=Sequence derived from alignment at scaffold_6:693107..694150- (Nannochloropsis oceanica)
GACTCTTGCAGGCAGCGTCCCTAGATTTCTGATTGTATACTCCAAAGGGA
AAGGTTTGCCTTCAATTGCCACCTCATCCACCACGTTCTTGATTTAAGAA
AGGGTGGGACATGAAAGGAGAATATGAGAAAGACGCGAAAAAAGAAACTG
AATTTACGCTTTCTTATTTACGGTTTGTTATACGTAAGGGCACGTCTCAA
TTCCTCGTCAGCGTGGAACCGGCGCGAAATCCTCCCCCAAGCCGTAGCTC
AAGAAAGGCTTCCTTCCGCAATGTGTTTTCACATCAATCTTCCTCTGTTA
TACAGCCAATACTTCGTCGACCGAAGCCTCCGATTGGGGCATGGCAGAGA
GTTAGACAAGCACACGAACCACACTCGCCCCGCTCACACATATCCCATCG
ACATACAGGCAAGGAGACTGCAACCATACTATACGAAAACTGCACCAAAA
ACCCATGCAGCCTGGATAAATTCATTACACATACTGCTATACATGCCCGG
ACAACAGTCATTAGTCGCTGGTGCTACCATCAAGACGCATCGCATGCCCT
CCTAGGCATTCCTCCTAACCCTCAACTAAGGACACTTTCATTTCCTCATC
ACAGCCACACATTGCACTGTCAATCACATGCACAGTTATGTAAGCCCTTC
ACATTTCGTAGGTTATGCCAGACTCCCTCAGCTTACCTTCAAAACAGAAA
TGAAAGCGGCAGGTTGCTGTCCCTCTTGGCCGAATACTAGAGCGAGGAAG
AGGAGAGGGGCAAGCAGGCTTGCCCGTCCTGCCGTTGCCAACATACCTTC
CTTCTGCCTGTGAGATGTGTTGAGGAGCACAGTTAGAGGGAGGGTGTTGG
TTAAACGCGTGACTGGCTTGGTATTCACGGCACGGTCTTAAAGGTAGCCG
GCGGGGTCACTCGGAGGCAGGGTGTTGCATGGGTAGGATGAATGATGGGA
AGGAGAGGGTCGGCAATGCTTGGTGTGGCCTTGAGAGGCGCCTCTCACCC
TCACTTAACGATGTTCTCCAGCCATGCACACAACCACAGGCTTC
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Coding sequence (CDS) from alignment at scaffold_6:693107..694150-

>mRNA_3577 ID=mRNA_3577|Name=jgi.p|Nanoce1779_2|366204|organism=Nannochloropsis oceanica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_6:693107..694150- (Nannochloropsis oceanica)
ATGAAAGGAGAATATGAGAAAGACGCGAAAAAAGAAACTGAATTTACGCT
TTCTTATTTACGGTTTGTTATACGTAAGGGCACGTCTCAATTCCTCGTCA
GCGTGGAACCGGCGCGAAATCCTCCCCCAAGCCGTAGCTCAAGAAAGGCT
TCCTTCCGCAATGTGTTTTCACATCAATCTTCCTCTGTTATACAGCCAAT
ACTTCGTCGACCGAAGCCTCCGATTGGGGCATGGCAGAGAGTTAGACAAG
CACACGAACCACACTCGCCCCGCTCACACATATCCCATCGACATACAGGC
AAGGAGACTGCAACCATACTATACGAAAACTGCACCAAAAACCCATGCAG
CCTGGATAAATTCATTACACATACTGCTATACATGCCCGGACAACAGTCA
TTAGTCGCTGGTGCTACCATCAAGACGCATCGCATGCCCTCCTAGGCATT
CCTCCTAACCCTCAACTAAGGACACTTTCATTTCCTCATCACAGCCACAC
ATTGCACTGTCAATCACATGCACAGTTATGTAAGCCCTTCACATTTCGTA
GGTTATGCCAGACTCCCTCAGCTTACCTTCAAAACAGAAATGAAAGCGGC
AGGTTGCTGTCCCTCTTGGCCGAATACTAG
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Synonyms
Publications