jgi.p|Nanoce1779_2|582666, mRNA_3575 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582666
Unique NamemRNA_3575
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length657
Alignment locationscaffold_6:690665..691321 +

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Properties
Property NameValue
TranscriptId582752
TrackFilteredModels2
ProteinId582666
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:690665..691321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582666gene_3575Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582666mRNA_3575-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3575CDS_3575Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3575 ID=mRNA_3575|Name=jgi.p|Nanoce1779_2|582666|organism=Nannochloropsis oceanica|type=mRNA|length=657bp
ACAGGAGCCCAACAACCATCCCGGCAAATCTGAGGAGGAAGCCATGGAAA
AGACCAGCGAGATGATTCAACATGTGAGTGATAAATAGTATGTGTGCACA
GAGAAAGCGAGGAGAAAGCGAAGAAGCGAAGAACCGGTCGCGCGCTTATT
ACAACCCACTCCTTTCCCGCACAAGCAGACACAGCCAGCGGCGGCAGGAG
CACCCGAAACGAGCGAAACCGTAGCAGCATCCATGAATACGGGTGGTGGT
GGTAGCAATGCGCAGCAGGACACACCGTCCCCTGCCCTCGACGAGGACGG
AGGTGGCATTCAGGGAGCAGGGGAGGATGACAAGAAAAAGATGGCAGTGG
CCGCAGCAGCCGCGCAGCAAGAGCAAGACAAGGCAAATATGCAGTCCTTG
CCCATCCGTGCCTACTTGGATCAGACTGTGGTGCCCATTCTTTTAGACGG
TATGTCGCAACTGGTCCAGGAGCGGCCTGGCAATCCGATCGAGTGGTTGG
CAGCCTACCTCATCAAAAACAACCCCCAAAAGTCCGAGTAGAAGCAATGA
GTAACGATAGGGCAAATGAGTAGCCGTATGTGTACGTGAAGACAAGCCGG
AGTGTGCGTGGATGGATGGACAATGGAAGAAAAGATAAGATAGGCGGGGC
AGAAAAG
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protein sequence of jgi.p|Nanoce1779_2|582666

>mRNA_3575-protein ID=mRNA_3575-protein|Name=jgi.p|Nanoce1779_2|582666|organism=Nannochloropsis oceanica|type=polypeptide|length=103bp
MNTGGGGSNAQQDTPSPALDEDGGGIQGAGEDDKKKMAVAAAAAQQEQDK
ANMQSLPIRAYLDQTVVPILLDGMSQLVQERPGNPIEWLAAYLIKNNPQK
SE*
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mRNA from alignment at scaffold_6:690665..691321+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3575 ID=mRNA_3575|Name=jgi.p|Nanoce1779_2|582666|organism=Nannochloropsis oceanica|type=mRNA|length=657bp|location=Sequence derived from alignment at scaffold_6:690665..691321+ (Nannochloropsis oceanica)
ACAGGAGCCCAACAACCATCCCGGCAAATCTGAGGAGGAAGCCATGGAAA
AGACCAGCGAGATGATTCAACATGTGAGTGATAAATAGTATGTGTGCACA
GAGAAAGCGAGGAGAAAGCGAAGAAGCGAAGAACCGGTCGCGCGCTTATT
ACAACCCACTCCTTTCCCGCACAAGCAGACACAGCCAGCGGCGGCAGGAG
CACCCGAAACGAGCGAAACCGTAGCAGCATCCATGAATACGGGTGGTGGT
GGTAGCAATGCGCAGCAGGACACACCGTCCCCTGCCCTCGACGAGGACGG
AGGTGGCATTCAGGGAGCAGGGGAGGATGACAAGAAAAAGATGGCAGTGG
CCGCAGCAGCCGCGCAGCAAGAGCAAGACAAGGCAAATATGCAGTCCTTG
CCCATCCGTGCCTACTTGGATCAGACTGTGGTGCCCATTCTTTTAGACGG
TATGTCGCAACTGGTCCAGGAGCGGCCTGGCAATCCGATCGAGTGGTTGG
CAGCCTACCTCATCAAAAACAACCCCCAAAAGTCCGAGTAGAAGCAATGA
GTAACGATAGGGCAAATGAGTAGCCGTATGTGTACGTGAAGACAAGCCGG
AGTGTGCGTGGATGGATGGACAATGGAAGAAAAGATAAGATAGGCGGGGC
AGAAAAG
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Coding sequence (CDS) from alignment at scaffold_6:690665..691321+

>mRNA_3575 ID=mRNA_3575|Name=jgi.p|Nanoce1779_2|582666|organism=Nannochloropsis oceanica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_6:690665..691321+ (Nannochloropsis oceanica)
ATGAATACGGGTGGTGGTGGTAGCAATGCGCAGCAGGACACACCGTCCCC
TGCCCTCGACGAGGACGGAGGTGGCATTCAGGGAGCAGGGGAGGATGACA
AGAAAAAGATGGCAGTGGCCGCAGCAGCCGCGCAGCAAGAGCAAGACAAG
GCAAATATGCAGTCCTTGCCCATCCGTGCCTACTTGGATCAGACTGTGGT
GCCCATTCTTTTAGACGGTATGTCGCAACTGGTCCAGGAGCGGCCTGGCA
ATCCGATCGAGTGGTTGGCAGCCTACCTCATCAAAAACAACCCCCAAAAG
TCCGAGTAG
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Synonyms
Publications