jgi.p|Nanoce1779_2|582663, mRNA_3573 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582663
Unique NamemRNA_3573
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1553
Alignment locationscaffold_6:688825..690500 -

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Properties
Property NameValue
TranscriptId582749
TrackFilteredModels2
ProteinId582663
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:688825..690500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582663gene_3573Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582663mRNA_3573-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3573CDS_3573Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3573 ID=mRNA_3573|Name=jgi.p|Nanoce1779_2|582663|organism=Nannochloropsis oceanica|type=mRNA|length=1553bp
AGCTACAGCATCTCTCTACAGTACAACACATTACTCGCCGCCGCTCCTCT
GAAAAAAGCCCTCCTTCTCCCTCCTTCCTTCCATCCCTCGTCTGGCGGTC
TATAGTTTGGCCTCCTTCGCGCAATAATGTTATGCACACTCTGAATTGCA
CATACTCTGTCAGACGCAAGAGGGAGCGATCATGGTTTCATTTTGTACGA
ATAGAGCCACCACCGAAGCTAATGGTGTTGAAGAGCCTGTATCGTTCAAT
GAATTAGAACGCCTACCGACGACGAGCTGCCTGGTTCCTCGCTTCCCAAT
TTTGTTCCATCTCCCAGTCTCAACCAGCCACTCCACCACAACCCATCCTC
TAGGTGTAGCTTGCCGCGACATTAGCACGTGGTGCCATGGCTTCCACGAA
TAAGTCGACGACCCCAGTGAAGGTAGCTGCCACTCAGTTTGCGGCGTCTA
TGAAGCTGGCGGAAAACCTAATCAAGGGCGAGGCTTTGGTGAGGGAGGCC
GCGCGACAGGGCGCAAAGATCATCTTGCTGCAAGAGCTGTTTGCGGGCCC
CTACTTTTGCCAGGAAATGACAAGTGGATTCTTGGCCTGGGCCGAGCCAG
TGGAGGAATCCGTGGTGGTAAAGCGTTTCCAAGCATTGGCTGCGGAGCTA
CAGGTAGTACTACCCGTGAGCTTCTATGAGCGGGCGGGGAACGCCTACTA
CAACAGCGTAGCGATGGTGGATGCGGACGGGACTCTGCTTGGTGTGTATC
GCAAGTCGCATATTCCTGACTCGCCCGGCTACTTTGAAAAGTTTTATTTC
ACGCCCGGCGACAGCGGCTTTCGGGTCTGGAAGACGCGCTACGCAAAACT
TGGCGTGGGTATTTGCTGGGACCAATGGTTTCCCGAGACGGCCCGGTGCT
TGGCGTTGCAAGGTGCGGAGCTGCTTTTATTCCCCACGGCCATAGGCTCC
GAGCCCCAGGACGGTGCGATTGACTCCCGGGCACACTGGCGGCGGGTAAT
GCAGGGCCATGCTGGCGCCAATATGACGCCCGTCATTGCCTCTAATCGCG
TAGGCGTCGAAACGCCGTTCTCTCAAGACCCTGGCAGCGCCTGCGTGCGC
GACTCCTCCATCACCTTCTATGGGAATTCCTTCATCACCGATGAGACAGG
AGCCATCCTCGCCGACGCAAATGACCACTCCGAAGCCGTGTTGGTAGTGG
CCTTCGACCTTGCCAAGATCCGGCAAGCCCGCGCGTCGTGGGGCATGTTT
CGAGACCGACGCCCGGCTTTGTATAAGCCTCTTTTGACCAAGGACGGCAT
CCTGATAGCGCCCTTGTGGAAAGAAATACACAATACGTATTGAAAATTGT
GCAGATAGAGGAAAAAGAGATTTTCAAAATGAAATATAATCAGTAACTCA
GTTGCTGCCCATGCGTAATCCGGACTAATTTGTTTTAGGGGTTCTGCGTG
TGCCTCCTTCACACAGGCACCCGATCCGCCCATCCATAAAGTGATGGACT
GACAGACAGAGGGACTGACTAATCGTATCAAGTAAAGGCGGGGAGACAGC
CAC
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protein sequence of jgi.p|Nanoce1779_2|582663

>mRNA_3573-protein ID=mRNA_3573-protein|Name=jgi.p|Nanoce1779_2|582663|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MASTNKSTTPVKVAATQFAASMKLAENLIKGEALVREAARQGAKIILLQE
LFAGPYFCQEMTSGFLAWAEPVEESVVVKRFQALAAELQVVLPVSFYERA
GNAYYNSVAMVDADGTLLGVYRKSHIPDSPGYFEKFYFTPGDSGFRVWKT
RYAKLGVGICWDQWFPETARCLALQGAELLLFPTAIGSEPQDGAIDSRAH
WRRVMQGHAGANMTPVIASNRVGVETPFSQDPGSACVRDSSITFYGNSFI
TDETGAILADANDHSEAVLVVAFDLAKIRQARASWGMFRDRRPALYKPLL
TKDGILIAPLWKEIHNTY*
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mRNA from alignment at scaffold_6:688825..690500-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3573 ID=mRNA_3573|Name=jgi.p|Nanoce1779_2|582663|organism=Nannochloropsis oceanica|type=mRNA|length=1676bp|location=Sequence derived from alignment at scaffold_6:688825..690500- (Nannochloropsis oceanica)
AGCTACAGCATCTCTCTACAGTACAACACATTACTCGCCGCCGCTCCTCT
GAAAAAAGCCCTCCTTCTCCCTCCTTCCTTCCATCCCTCGTCTGGCGGTC
TATAGTTTGGCCTCCTTCGCGCAATAATGTTATGCACACTCTGAATTGCA
CATACTCTGTCAGACGCAAGAGGGAGCGATCATGGTTTCATTTTGTACGA
ATAGAGCCACCACCGAAGCTAATGGTGTTGAAGAGCCTGTATCGTTCAAT
GAATTAGAACGCCTACCGACGACGAGCTGCCTGGTTCCTCGCTTCCCAAT
TTTGTTCCATCTCCCAGTCTCAACCAGCCACTCCACCACAACCCATCCTC
TAGGTGTAGCTTGCCGCGACATTAGCACGTGGTGCCATGGCTTCCACGAA
TAAGTCGACGACCCCAGTGAAGGTAGCTGCCACTCAGTTTGCGGCGTCTA
TGAAGCTGGCGGAAAACCTAATCAAGGGCGAGGCTTTGGTGAGGGAGGCC
GCGCGACAGGGCGCAAAGGTACGCGTATGCATGTGGTTGTGGCAGATAGG
TGACATTTTTCCAAAGGTAATAGAAAGCTTCAATTTATACAGGAAATTAC
CCTTTTTGAATTTCTTTTCCGTCATTCCACGAAATCATAAGATCATCTTG
CTGCAAGAGCTGTTTGCGGGCCCCTACTTTTGCCAGGAAATGACAAGTGG
ATTCTTGGCCTGGGCCGAGCCAGTGGAGGAATCCGTGGTGGTAAAGCGTT
TCCAAGCATTGGCTGCGGAGCTACAGGTAGTACTACCCGTGAGCTTCTAT
GAGCGGGCGGGGAACGCCTACTACAACAGCGTAGCGATGGTGGATGCGGA
CGGGACTCTGCTTGGTGTGTATCGCAAGTCGCATATTCCTGACTCGCCCG
GCTACTTTGAAAAGTTTTATTTCACGCCCGGCGACAGCGGCTTTCGGGTC
TGGAAGACGCGCTACGCAAAACTTGGCGTGGGTATTTGCTGGGACCAATG
GTTTCCCGAGACGGCCCGGTGCTTGGCGTTGCAAGGTGCGGAGCTGCTTT
TATTCCCCACGGCCATAGGCTCCGAGCCCCAGGACGGTGCGATTGACTCC
CGGGCACACTGGCGGCGGGTAATGCAGGGCCATGCTGGCGCCAATATGAC
GCCCGTCATTGCCTCTAATCGCGTAGGCGTCGAAACGCCGTTCTCTCAAG
ACCCTGGCAGCGCCTGCGTGCGCGACTCCTCCATCACCTTCTATGGGAAT
TCCTTCATCACCGATGAGACAGGAGCCATCCTCGCCGACGCAAATGACCA
CTCCGAAGCCGTGTTGGTAGTGGCCTTCGACCTTGCCAAGATCCGGCAAG
CCCGCGCGTCGTGGGGCATGTTTCGAGACCGACGCCCGGCTTTGTATAAG
CCTCTTTTGACCAAGGACGGCATCCTGATAGCGCCCTTGTGGAAAGAAAT
ACACAATACGTATTGAAAATTGTGCAGATAGAGGAAAAAGAGATTTTCAA
AATGAAATATAATCAGTAACTCAGTTGCTGCCCATGCGTAATCCGGACTA
ATTTGTTTTAGGGGTTCTGCGTGTGCCTCCTTCACACAGGCACCCGATCC
GCCCATCCATAAAGTGATGGACTGACAGACAGAGGGACTGACTAATCGTA
TCAAGTAAAGGCGGGGAGACAGCCAC
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Coding sequence (CDS) from alignment at scaffold_6:688825..690500-

>mRNA_3573 ID=mRNA_3573|Name=jgi.p|Nanoce1779_2|582663|organism=Nannochloropsis oceanica|type=CDS|length=1914bp|location=Sequence derived from alignment at scaffold_6:688825..690500- (Nannochloropsis oceanica)
ATCATCTTGCTGCAAGAGCTGTTTGCGGGCCCCTACTTTTGCCAGGAAAT
GACAAGTGGATTCTTGGCCTGGGCCGAGCCAGTGGAGGAATCCGTGGTGG
TAAAGCGTTTCCAAGCATTGGCTGCGGAGCTACAGGTAGTACTACCCGTG
AGCTTCTATGAGCGGGCGGGGAACGCCTACTACAACAGCGTAGCGATGGT
GGATGCGGACGGGACTCTGCTTGGTGTGTATCGCAAGTCGCATATTCCTG
ACTCGCCCGGCTACTTTGAAAAGTTTTATTTCACGCCCGGCGACAGCGGC
TTTCGGGTCTGGAAGACGCGCTACGCAAAACTTGGCGTGGGTATTTGCTG
GGACCAATGGTTTCCCGAGACGGCCCGGTGCTTGGCGTTGCAAGGTGCGG
AGCTGCTTTTATTCCCCACGGCCATAGGCTCCGAGCCCCAGGACGGTGCG
ATTGACTCCCGGGCACACTGGCGGCGGGTAATGCAGGGCCATGCTGGCGC
CAATATGACGCCCGTCATTGCCTCTAATCGCGTAGGCGTCGAAACGCCGT
TCTCTCAAGACCCTGGCAGCGCCTGCGTGCGCGACTCCTCCATCACCTTC
TATGGGAATTCCTTCATCACCGATGAGACAGGAGCCATCCTCGCCGACGC
AAATGACCACTCCGAAGCCGTGTTGGTAGTGGCCTTCGACCTTGCCAAGA
TCCGGCAAGCCCGCGCGTCGTGGGGCATGTTTCGAGACCGACGCCCGGCT
TTGTATAAGCCTCTTTTGACCAAGGACGGCATCCTGATAGCGCCCTTGTG
GAAAGAAATACACAATACGTATTGAATGGCTTCCACGAATAAGTCGACGA
CCCCAGTGAAGGTAGCTGCCACTCAGTTTGCGGCGTCTATGAAGCTGGCG
GAAAACCTAATCAAGGGCGAGGCTTTGGTGAGGGAGGCCGCGCGACAGGG
CGCAAAGATCATCTTGCTGCAAGAGCTGTTTGCGGGCCCCTACTTTTGCC
AGGAAATGACAAGTGGATTCTTGGCCTGGGCCGAGCCAGTGGAGGAATCC
GTGGTGGTAAAGCGTTTCCAAGCATTGGCTGCGGAGCTACAGGTAGTACT
ACCCGTGAGCTTCTATGAGCGGGCGGGGAACGCCTACTACAACAGCGTAG
CGATGGTGGATGCGGACGGGACTCTGCTTGGTGTGTATCGCAAGTCGCAT
ATTCCTGACTCGCCCGGCTACTTTGAAAAGTTTTATTTCACGCCCGGCGA
CAGCGGCTTTCGGGTCTGGAAGACGCGCTACGCAAAACTTGGCGTGGGTA
TTTGCTGGGACCAATGGTTTCCCGAGACGGCCCGGTGCTTGGCGTTGCAA
GGTGCGGAGCTGCTTTTATTCCCCACGGCCATAGGCTCCGAGCCCCAGGA
CGGTGCGATTGACTCCCGGGCACACTGGCGGCGGGTAATGCAGGGCCATG
CTGGCGCCAATATGACGCCCGTCATTGCCTCTAATCGCGTAGGCGTCGAA
ACGCCGTTCTCTCAAGACCCTGGCAGCGCCTGCGTGCGCGACTCCTCCAT
CACCTTCTATGGGAATTCCTTCATCACCGATGAGACAGGAGCCATCCTCG
CCGACGCAAATGACCACTCCGAAGCCGTGTTGGTAGTGGCCTTCGACCTT
GCCAAGATCCGGCAAGCCCGCGCGTCGTGGGGCATGTTTCGAGACCGACG
CCCGGCTTTGTATAAGCCTCTTTTGACCAAGGACGGCATCCTGATAGCGC
CCTTGTGGAAAGAAATACACAATACGTATTGAATGGCTTCCACGAATAAG
TCGACGACCCCAGTGAAGGTAGCTGCCACTCAGTTTGCGGCGTCTATGAA
GCTGGCGGAAAACCTAATCAAGGGCGAGGCTTTGGTGAGGGAGGCCGCGC
GACAGGGCGCAAAG
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Synonyms
Publications