Properties
| Property Name | Value |
|---|
| TranscriptId | 582742 |
| Track | FilteredModels2 |
| ProteinId | 582656 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:684862..686622 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3571 ID=mRNA_3571|Name=jgi.p|Nanoce1779_2|582656|organism=Nannochloropsis oceanica|type=mRNA|length=975bp
ACAGGCAATCATGAATCCCGCGCTCAAGGTGGGCCTATTCAATGGCCGAA
TCTTTCCCTCGCTCTCACTCCTCAGAGGAGCAATACGCGCACCCCTCTCA
CGCCGCCCCATGACTACCATTAAGGCACCGCCAGACGCCGCCATCAAAAC
CGCAGCATCATCTCCAGCAAGGGGTGGAGGACCACCAACCGGTAGCAGCA
AGATTGATAAAATGCCTGTAACGTGGGCGAGCCTGGGCCTCATGGCGGTG
ACGGGCGCTGGCCTCGCGTACTACTACCAAGGCGAGAAGGAGAAGAAGCA
GCAACAAGCCTTGGGCAAGGTGACAAGTTACGGAAAGCCGGCACTCGGCG
GGCCTTGGACGCTGGTGGATTTCACCGGCAAGCCTGTGACTGACGCGGAC
TTCCGCGGCGAGTTTTTGTTACTGTACTTCGGCTTCACGCACTGCCCTGA
CATCTGCCCCTCCGAGCTGGTCAAGGTGGGCAGGATCTTGGACCTGCTTG
ACAAGGAGCCGCGCCTGCCCATGGTGCGCCCTGTCTTCATTTCCGTTGAT
CCCGACCGTGATAATGTGGGCCAGCTCCGGCACTACGCTCAAGACTTTCA
CCCGCGTATCTTGTATTTGACGGGCACGCAGGAGCAGCTGGCTAAGGTGA
CCAAAGGTTACCGAGTCTACTTCAGCAAGGCGGACGAGGAGGACGAGGAG
AATTACCTGGTAGATCACTCCATCGTGTTGTACCTCATCGGGCCCGATGG
CTCCTTCCTGGATTTCTTCACGCAGTCCATGCAACCTACCGATATTGTGA
ACCGTATTAAGGGCTATCTTGGCCAAGCAAGGCGGGTTGATACGTAAGAC
GCATACACACATATGAAGAATCGAAAAAATGAGCGCCATGGCGAAATCGA
TGAGTCAATAGCTTGAAGTGTGTGAAATAGGGCACGAAATAAACATCGAA
TATCCGTTTCCTCTTCTCAAGTCCC back to topprotein sequence of jgi.p|Nanoce1779_2|582656 >mRNA_3571-protein ID=mRNA_3571-protein|Name=jgi.p|Nanoce1779_2|582656|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MNPALKVGLFNGRIFPSLSLLRGAIRAPLSRRPMTTIKAPPDAAIKTAAS
SPARGGGPPTGSSKIDKMPVTWASLGLMAVTGAGLAYYYQGEKEKKQQQA
LGKVTSYGKPALGGPWTLVDFTGKPVTDADFRGEFLLLYFGFTHCPDICP
SELVKVGRILDLLDKEPRLPMVRPVFISVDPDRDNVGQLRHYAQDFHPRI
LYLTGTQEQLAKVTKGYRVYFSKADEEDEENYLVDHSIVLYLIGPDGSFL
DFFTQSMQPTDIVNRIKGYLGQARRVDT* back to topmRNA from alignment at scaffold_6:684862..686622- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3571 ID=mRNA_3571|Name=jgi.p|Nanoce1779_2|582656|organism=Nannochloropsis oceanica|type=mRNA|length=1761bp|location=Sequence derived from alignment at scaffold_6:684862..686622- (Nannochloropsis oceanica)
ACAGGCAATCATGAATCCCGCGCTCAAGGTGGGCCTATTCAATGGCCGAA
TCTTTCCCTCGCTCTCACTCCTCAGAGGAGCAATACGCGCACCCCTCTCA
CGCCGCCCCATGACTACCATTAAGGCACCGCCAGACGCCGCCATCAAAAC
CGCAGCATCATCTCCAGCAAGGGGTGGAGGACCACCAACCGGTAGCAGCA
AGATTGATAAAATGGTAAGTTTGGGTTTGGAGGTTGTAAAATGCCGCGAA
CTCATCATATAGCACCCGCCCCACCTCACGCCGGGATGCACAGCAAAGGT
ACCAGAGAGACAAGAGAAGTTTGGGCGACAAAGAGTGGCACATTACCTGG
TGATCTAACCCCGTCAGTGCCCCCTTAAGTGAAGAGGCTTTTTTGGAGGG
GGAAGGATGGCAACATGCAATACTCTGCGCTTCAGATGAGGAGCGAGTAT
ATACCAGTTTGTACCTCTGCCTCTGCCCCTCCTCTATTTTCATCATTATA
CTGTAACGGGTCGAAAATTAAATGGAAACCTCGCTGCAATCAACTCACCA
TCCCATCCCACTCTCAAAATCTACTCTCAAGCCTGTAACGTGGGCGAGCC
TGGGCCTCATGGCGGTGACGGGCGCTGGCCTCGCGTACTACTACCAAGGC
GAGAAGGAGAAGAAGCAGCAACAAGGTATCCTAGTCGTGTCGCGTTCATC
TCTTTCTTTTCCTTGGAAGCATTTTCTCTGTTTCTATCATTTTTCTCTCT
CTTTCGCACACGGCATTCACGCTCTTCCTTCGCTTTCTTCTGGTCCCTCC
CTCCTCTTTACTCCACAAACTACTCAGCCTTGGGCAAGGTGACAAGTTAC
GGAAAGCCGGCACTCGGCGGGCCTTGGACGCTGGTGGATTTCACCGGCAA
GCCTGTGACTGACGCGGACTTCCGCGGCGAGTTTTTGTTACTGTACTTCG
GCTTCACGCACTGCCCTGACATCTGCCCCTCCGAGCTGGTCAAGGTGGGC
AGGATCTTGGACCTGCTTGACAAGGAGCCGCGCCTGCCCATGGTGCGCCC
TGTCTTCATTTCCGTTGATCCCGACCGTGATAATGTGGGCCAGCTCCGGC
ACTACGCTCAAGGTGCGTTGTCTTGGGTGGTGAAAAAGCAGCGGGGTGAG
GGGGATTAAGGGATAGGGAAGAGATGCGATGCCGAGTGACAGTGAATGGA
AAGCAGCGCACTCTTACTGCTGTCTGTAGTTACGAGCAGCACTCTGACCG
AATTTCTCTCTCGCTCCTCTTACGCCCACTAGACTTTCACCCGCGTATCT
TGTATTTGACGGGCACGCAGGAGCAGCTGGCTAAGGTGACCAAAGGTTAC
CGAGTCTACTTCAGCAAGGTACGTGAAAGGCCGTTACAAAGATAGGAAAG
CTTGTTGATGGATTTATAAATTAGTCCCGTGTTCCACCTGTCATCGCCTT
GATACCACTGCGCAGGCGGACGAGGAGGACGAGGAGAATTACCTGGTAGA
TCACTCCATCGTGTTGTACCTCATCGGGCCCGATGGCTCCTTCCTGGATT
TCTTCACGCAGTCCATGCAACCTACCGATATTGTGAACCGTATTAAGGGC
TATCTTGGCCAAGCAAGGCGGGTTGATACGTAAGACGCATACACACATAT
GAAGAATCGAAAAAATGAGCGCCATGGCGAAATCGATGAGTCAATAGCTT
GAAGTGTGTGAAATAGGGCACGAAATAAACATCGAATATCCGTTTCCTCT
TCTCAAGTCCC back to topCoding sequence (CDS) from alignment at scaffold_6:684862..686622- >mRNA_3571 ID=mRNA_3571|Name=jgi.p|Nanoce1779_2|582656|organism=Nannochloropsis oceanica|type=CDS|length=4185bp|location=Sequence derived from alignment at scaffold_6:684862..686622- (Nannochloropsis oceanica)
GCGGACGAGGAGGACGAGGAGAATTACCTGGTAGATCACTCCATCGTGTT
GTACCTCATCGGGCCCGATGGCTCCTTCCTGGATTTCTTCACGCAGTCCA
TGCAACCTACCGATATTGTGAACCGTATTAAGGGCTATCTTGGCCAAGCA
AGGCGGGTTGATACGTAAACTTTCACCCGCGTATCTTGTATTTGACGGGC
ACGCAGGAGCAGCTGGCTAAGGTGACCAAAGGTTACCGAGTCTACTTCAG
CAAGCCTTGGGCAAGGTGACAAGTTACGGAAAGCCGGCACTCGGCGGGCC
TTGGACGCTGGTGGATTTCACCGGCAAGCCTGTGACTGACGCGGACTTCC
GCGGCGAGTTTTTGTTACTGTACTTCGGCTTCACGCACTGCCCTGACATC
TGCCCCTCCGAGCTGGTCAAGGTGGGCAGGATCTTGGACCTGCTTGACAA
GGAGCCGCGCCTGCCCATGGTGCGCCCTGTCTTCATTTCCGTTGATCCCG
ACCGTGATAATGTGGGCCAGCTCCGGCACTACGCTCAAGCCTGTAACGTG
GGCGAGCCTGGGCCTCATGGCGGTGACGGGCGCTGGCCTCGCGTACTACT
ACCAAGGCGAGAAGGAGAAGAAGCAGCAACAAGATGAATCCCGCGCTCAA
GGTGGGCCTATTCAATGGCCGAATCTTTCCCTCGCTCTCACTCCTCAGAG
GAGCAATACGCGCACCCCTCTCACGCCGCCCCATGACTACCATTAAGGCA
CCGCCAGACGCCGCCATCAAAACCGCAGCATCATCTCCAGCAAGGGGTGG
AGGACCACCAACCGGTAGCAGCAAGATTGATAAAATGGCGGACGAGGAGG
ACGAGGAGAATTACCTGGTAGATCACTCCATCGTGTTGTACCTCATCGGG
CCCGATGGCTCCTTCCTGGATTTCTTCACGCAGTCCATGCAACCTACCGA
TATTGTGAACCGTATTAAGGGCTATCTTGGCCAAGCAAGGCGGGTTGATA
CGTAAACTTTCACCCGCGTATCTTGTATTTGACGGGCACGCAGGAGCAGC
TGGCTAAGGTGACCAAAGGTTACCGAGTCTACTTCAGCAAGCCTTGGGCA
AGGTGACAAGTTACGGAAAGCCGGCACTCGGCGGGCCTTGGACGCTGGTG
GATTTCACCGGCAAGCCTGTGACTGACGCGGACTTCCGCGGCGAGTTTTT
GTTACTGTACTTCGGCTTCACGCACTGCCCTGACATCTGCCCCTCCGAGC
TGGTCAAGGTGGGCAGGATCTTGGACCTGCTTGACAAGGAGCCGCGCCTG
CCCATGGTGCGCCCTGTCTTCATTTCCGTTGATCCCGACCGTGATAATGT
GGGCCAGCTCCGGCACTACGCTCAAGCCTGTAACGTGGGCGAGCCTGGGC
CTCATGGCGGTGACGGGCGCTGGCCTCGCGTACTACTACCAAGGCGAGAA
GGAGAAGAAGCAGCAACAAGATGAATCCCGCGCTCAAGGTGGGCCTATTC
AATGGCCGAATCTTTCCCTCGCTCTCACTCCTCAGAGGAGCAATACGCGC
ACCCCTCTCACGCCGCCCCATGACTACCATTAAGGCACCGCCAGACGCCG
CCATCAAAACCGCAGCATCATCTCCAGCAAGGGGTGGAGGACCACCAACC
GGTAGCAGCAAGATTGATAAAATGGCGGACGAGGAGGACGAGGAGAATTA
CCTGGTAGATCACTCCATCGTGTTGTACCTCATCGGGCCCGATGGCTCCT
TCCTGGATTTCTTCACGCAGTCCATGCAACCTACCGATATTGTGAACCGT
ATTAAGGGCTATCTTGGCCAAGCAAGGCGGGTTGATACGTAAACTTTCAC
CCGCGTATCTTGTATTTGACGGGCACGCAGGAGCAGCTGGCTAAGGTGAC
CAAAGGTTACCGAGTCTACTTCAGCAAGCCTTGGGCAAGGTGACAAGTTA
CGGAAAGCCGGCACTCGGCGGGCCTTGGACGCTGGTGGATTTCACCGGCA
AGCCTGTGACTGACGCGGACTTCCGCGGCGAGTTTTTGTTACTGTACTTC
GGCTTCACGCACTGCCCTGACATCTGCCCCTCCGAGCTGGTCAAGGTGGG
CAGGATCTTGGACCTGCTTGACAAGGAGCCGCGCCTGCCCATGGTGCGCC
CTGTCTTCATTTCCGTTGATCCCGACCGTGATAATGTGGGCCAGCTCCGG
CACTACGCTCAAGCCTGTAACGTGGGCGAGCCTGGGCCTCATGGCGGTGA
CGGGCGCTGGCCTCGCGTACTACTACCAAGGCGAGAAGGAGAAGAAGCAG
CAACAAGATGAATCCCGCGCTCAAGGTGGGCCTATTCAATGGCCGAATCT
TTCCCTCGCTCTCACTCCTCAGAGGAGCAATACGCGCACCCCTCTCACGC
CGCCCCATGACTACCATTAAGGCACCGCCAGACGCCGCCATCAAAACCGC
AGCATCATCTCCAGCAAGGGGTGGAGGACCACCAACCGGTAGCAGCAAGA
TTGATAAAATGGCGGACGAGGAGGACGAGGAGAATTACCTGGTAGATCAC
TCCATCGTGTTGTACCTCATCGGGCCCGATGGCTCCTTCCTGGATTTCTT
CACGCAGTCCATGCAACCTACCGATATTGTGAACCGTATTAAGGGCTATC
TTGGCCAAGCAAGGCGGGTTGATACGTAAACTTTCACCCGCGTATCTTGT
ATTTGACGGGCACGCAGGAGCAGCTGGCTAAGGTGACCAAAGGTTACCGA
GTCTACTTCAGCAAGCCTTGGGCAAGGTGACAAGTTACGGAAAGCCGGCA
CTCGGCGGGCCTTGGACGCTGGTGGATTTCACCGGCAAGCCTGTGACTGA
CGCGGACTTCCGCGGCGAGTTTTTGTTACTGTACTTCGGCTTCACGCACT
GCCCTGACATCTGCCCCTCCGAGCTGGTCAAGGTGGGCAGGATCTTGGAC
CTGCTTGACAAGGAGCCGCGCCTGCCCATGGTGCGCCCTGTCTTCATTTC
CGTTGATCCCGACCGTGATAATGTGGGCCAGCTCCGGCACTACGCTCAAG
CCTGTAACGTGGGCGAGCCTGGGCCTCATGGCGGTGACGGGCGCTGGCCT
CGCGTACTACTACCAAGGCGAGAAGGAGAAGAAGCAGCAACAAGATGAAT
CCCGCGCTCAAGGTGGGCCTATTCAATGGCCGAATCTTTCCCTCGCTCTC
ACTCCTCAGAGGAGCAATACGCGCACCCCTCTCACGCCGCCCCATGACTA
CCATTAAGGCACCGCCAGACGCCGCCATCAAAACCGCAGCATCATCTCCA
GCAAGGGGTGGAGGACCACCAACCGGTAGCAGCAAGATTGATAAAATGGC
GGACGAGGAGGACGAGGAGAATTACCTGGTAGATCACTCCATCGTGTTGT
ACCTCATCGGGCCCGATGGCTCCTTCCTGGATTTCTTCACGCAGTCCATG
CAACCTACCGATATTGTGAACCGTATTAAGGGCTATCTTGGCCAAGCAAG
GCGGGTTGATACGTAAACTTTCACCCGCGTATCTTGTATTTGACGGGCAC
GCAGGAGCAGCTGGCTAAGGTGACCAAAGGTTACCGAGTCTACTTCAGCA
AGCCTTGGGCAAGGTGACAAGTTACGGAAAGCCGGCACTCGGCGGGCCTT
GGACGCTGGTGGATTTCACCGGCAAGCCTGTGACTGACGCGGACTTCCGC
GGCGAGTTTTTGTTACTGTACTTCGGCTTCACGCACTGCCCTGACATCTG
CCCCTCCGAGCTGGTCAAGGTGGGCAGGATCTTGGACCTGCTTGACAAGG
AGCCGCGCCTGCCCATGGTGCGCCCTGTCTTCATTTCCGTTGATCCCGAC
CGTGATAATGTGGGCCAGCTCCGGCACTACGCTCAAGCCTGTAACGTGGG
CGAGCCTGGGCCTCATGGCGGTGACGGGCGCTGGCCTCGCGTACTACTAC
CAAGGCGAGAAGGAGAAGAAGCAGCAACAAGATGAATCCCGCGCTCAAGG
TGGGCCTATTCAATGGCCGAATCTTTCCCTCGCTCTCACTCCTCAGAGGA
GCAATACGCGCACCCCTCTCACGCCGCCCCATGACTACCATTAAGGCACC
GCCAGACGCCGCCATCAAAACCGCAGCATCATCTCCAGCAAGGGGTGGAG
GACCACCAACCGGTAGCAGCAAGATTGATAAAATG back to top
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