jgi.p|Nanoce1779_2|637856, mRNA_3569 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|637856
Unique NamemRNA_3569
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1350
Alignment locationscaffold_6:679303..681028 -

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Properties
Property NameValue
TranscriptId637942
TrackFilteredModels2
ProteinId637856
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:679303..681028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|637856gene_3569Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|637856mRNA_3569-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3569CDS_3569Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3569 ID=mRNA_3569|Name=jgi.p|Nanoce1779_2|637856|organism=Nannochloropsis oceanica|type=mRNA|length=1350bp
ATGAGCGTGCACCCACTGCTCCGTCTGGCGGACCTAACCGAGAACCTGAT
GCGGAAAGACGCTAGGGTGGGATACCCTTCAGCCGAACCGGAGGTCGAAC
CAGAAAGTTTTGGGTGGCTTTTTTCAGCCCAGCAGATCTTGCTGGATCAT
GTACTGGGTGACGAGACACGGGTGGTTGTACAGCTGGGCGCCTACCTGGG
CAAGACGACGCTCTTCATTGCAGAGCACGCCCCGCGGGCCTTGATCTTTG
TGGTCGACCCCTGGGACAACGCCGTGCTCAAAACGGAGCCCTCACTCAAC
AAGAACTTCGCCAACATCGACCTATTCGACCGTGTGCCCTTCTATCAGAC
ATTCCTCCGCAATACCTGGCACCTGGCGGCGCGGCGTCGGCCTGACGAGG
GAGATCGGCTGGTGGGCGTGGTACCACTCCGTATGGGGTTCGACGAAGGG
CTGGCGCTGCTCAAGGCCGATCTGAGCCTGCGGCCAGATGTCTTGTACTG
GGAGGGCTTTCCCGATGAGGCGGGGCTGCTGCAGACGCTGGGAACCGTGA
AGGAAGCCTTCCCTGGTGTGGTAGTGGTGGGCGACGGCTACAACTACCCG
GAGGTGCAGGCAGGCTTGACTCGTGCCAGCAAAGACCTGTACCAAGACCG
CAAACCGTTTGTGGAGATGGGCAAGTGCTGGACTTATTTGCGCCTGAAGA
TGGGCATGCTTTCAGAGCTGCGCGCGAAGTACACGGCCACGGACAACCGT
GCGGAGCGCACCGTGCTGGCAAGCAAGGAGGTCGCTGGCGCCTCCTTTAA
GGACCTGCTCTCGGGCCTCAAGTCAAAGAGCCGTCAGCTCAAGGACGATG
AGGCAGAAGAGAGGGCGGCCAGACGTCGCGCAGAAGAAGAGGAGCGGGAC
CGCACCCACCGGGAGCGGGAGGCGGAGGAGGAGGAGGAGCGGCAACGTCG
TTGGCAGGAGGGATATAAGGGAAGGGAGACGCCTCAAGAGGGAGAGGCGA
GGAAGGACAGCGCGCAGGAAGAGAAAGGGGGTATGGGGTGCCGCGAGTAT
CATGGTCGTAGACAAAGAGGGAGAGGTCGAGACAGAGGAGAGGGAAGGAT
TGGATGGAGGGTTTGGGGGCAAGACTACGAAGGCGAAGGAAGGGGACGGC
ATGAGACTGCAGGTGGCGGTGGAAATGCGGTGGTGCCGAAAAGGCCGAGG
CAAGAGATGGAGGAAGACAGCGAACATAAAAGCCAACAGCGCTGGGATCG
CAATCGCAGGCACGGGGAGGTTGACGAAAGTGAAGACGACGAGTGGACGA
GCCGAGCCTCGGGGGATGAGGAGGACGAGGGCGGCCGGGGTTGGGTGTAG
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protein sequence of jgi.p|Nanoce1779_2|637856

>mRNA_3569-protein ID=mRNA_3569-protein|Name=jgi.p|Nanoce1779_2|637856|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp
MSVHPLLRLADLTENLMRKDARVGYPSAEPEVEPESFGWLFSAQQILLDH
VLGDETRVVVQLGAYLGKTTLFIAEHAPRALIFVVDPWDNAVLKTEPSLN
KNFANIDLFDRVPFYQTFLRNTWHLAARRRPDEGDRLVGVVPLRMGFDEG
LALLKADLSLRPDVLYWEGFPDEAGLLQTLGTVKEAFPGVVVVGDGYNYP
EVQAGLTRASKDLYQDRKPFVEMGKCWTYLRLKMGMLSELRAKYTATDNR
AERTVLASKEVAGASFKDLLSGLKSKSRQLKDDEAEERAARRRAEEEERD
RTHREREAEEEEERQRRWQEGYKGRETPQEGEARKDSAQEEKGGMGCREY
HGRRQRGRGRDRGEGRIGWRVWGQDYEGEGRGRHETAGGGGNAVVPKRPR
QEMEEDSEHKSQQRWDRNRRHGEVDESEDDEWTSRASGDEEDEGGRGWV*
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mRNA from alignment at scaffold_6:679303..681028-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3569 ID=mRNA_3569|Name=jgi.p|Nanoce1779_2|637856|organism=Nannochloropsis oceanica|type=mRNA|length=1726bp|location=Sequence derived from alignment at scaffold_6:679303..681028- (Nannochloropsis oceanica)
ATGAGCGTGCACCCACTGCTCCGTCTGGCGGACCTAACCGAGAACCTGAT
GCGGAAAGACGCTAGGGTGGGATACCCTTCAGCCGAACCGGAGGTCGAAC
CAGAAAGGTGAGACGTAGAACATTTGTGGGTTGCGTGCATGGTTTTGGTG
TGTGAGAGGATTGGGAGACATATACTCATGCATCTTCTTTATAATCAATG
GGTTTATTGCCGACATGGAGTATCATTTTCTTTCTGTGGCGATGGCTCTT
TCTCACTTTCCTAAAGCTCACATAGGTGTCGCTTGCTGCCATGCGTCTTT
ACACAATTTACACTCCTAAACCTCATTTTAGCCAGCGTAAAACATCACTG
TCGTATCGATCGACCAGCACAATTTTTACAAACATCCTGCTTGGATGAGG
CTCTTATGCCACATTCAAAAATTAAAAGTCAAGATAACCGACCCTTGTCT
TCACCTCTCTTTCCCTCTTTGCCTTATCATAAGTTTTGGGTGGCTTTTTT
CAGCCCAGCAGATCTTGCTGGATCATGTACTGGGTGACGAGACACGGGTG
GTTGTACAGCTGGGCGCCTACCTGGGCAAGACGACGCTCTTCATTGCAGA
GCACGCCCCGCGGGCCTTGATCTTTGTGGTCGACCCCTGGGACAACGCCG
TGCTCAAAACGGAGCCCTCACTCAACAAGAACTTCGCCAACATCGACCTA
TTCGACCGTGTGCCCTTCTATCAGACATTCCTCCGCAATACCTGGCACCT
GGCGGCGCGGCGTCGGCCTGACGAGGGAGATCGGCTGGTGGGCGTGGTAC
CACTCCGTATGGGGTTCGACGAAGGGCTGGCGCTGCTCAAGGCCGATCTG
AGCCTGCGGCCAGATGTCTTGTACTGGGAGGGCTTTCCCGATGAGGCGGG
GCTGCTGCAGACGCTGGGAACCGTGAAGGAAGCCTTCCCTGGTGTGGTAG
TGGTGGGCGACGGCTACAACTACCCGGAGGTGCAGGCAGGCTTGACTCGT
GCCAGCAAAGACCTGTACCAAGACCGCAAACCGTTTGTGGAGATGGGCAA
GTGCTGGACTTATTTGCGCCTGAAGATGGGCATGCTTTCAGAGCTGCGCG
CGAAGTACACGGCCACGGACAACCGTGCGGAGCGCACCGTGCTGGCAAGC
AAGGAGGTCGCTGGCGCCTCCTTTAAGGACCTGCTCTCGGGCCTCAAGTC
AAAGAGCCGTCAGCTCAAGGACGATGAGGCAGAAGAGAGGGCGGCCAGAC
GTCGCGCAGAAGAAGAGGAGCGGGACCGCACCCACCGGGAGCGGGAGGCG
GAGGAGGAGGAGGAGCGGCAACGTCGTTGGCAGGAGGGATATAAGGGAAG
GGAGACGCCTCAAGAGGGAGAGGCGAGGAAGGACAGCGCGCAGGAAGAGA
AAGGGGGTATGGGGTGCCGCGAGTATCATGGTCGTAGACAAAGAGGGAGA
GGTCGAGACAGAGGAGAGGGAAGGATTGGATGGAGGGTTTGGGGGCAAGA
CTACGAAGGCGAAGGAAGGGGACGGCATGAGACTGCAGGTGGCGGTGGAA
ATGCGGTGGTGCCGAAAAGGCCGAGGCAAGAGATGGAGGAAGACAGCGAA
CATAAAAGCCAACAGCGCTGGGATCGCAATCGCAGGCACGGGGAGGTTGA
CGAAAGTGAAGACGACGAGTGGACGAGCCGAGCCTCGGGGGATGAGGAGG
ACGAGGGCGGCCGGGGTTGGGTGTAG
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Coding sequence (CDS) from alignment at scaffold_6:679303..681028-

>mRNA_3569 ID=mRNA_3569|Name=jgi.p|Nanoce1779_2|637856|organism=Nannochloropsis oceanica|type=CDS|length=2700bp|location=Sequence derived from alignment at scaffold_6:679303..681028- (Nannochloropsis oceanica)
TTTTGGGTGGCTTTTTTCAGCCCAGCAGATCTTGCTGGATCATGTACTGG
GTGACGAGACACGGGTGGTTGTACAGCTGGGCGCCTACCTGGGCAAGACG
ACGCTCTTCATTGCAGAGCACGCCCCGCGGGCCTTGATCTTTGTGGTCGA
CCCCTGGGACAACGCCGTGCTCAAAACGGAGCCCTCACTCAACAAGAACT
TCGCCAACATCGACCTATTCGACCGTGTGCCCTTCTATCAGACATTCCTC
CGCAATACCTGGCACCTGGCGGCGCGGCGTCGGCCTGACGAGGGAGATCG
GCTGGTGGGCGTGGTACCACTCCGTATGGGGTTCGACGAAGGGCTGGCGC
TGCTCAAGGCCGATCTGAGCCTGCGGCCAGATGTCTTGTACTGGGAGGGC
TTTCCCGATGAGGCGGGGCTGCTGCAGACGCTGGGAACCGTGAAGGAAGC
CTTCCCTGGTGTGGTAGTGGTGGGCGACGGCTACAACTACCCGGAGGTGC
AGGCAGGCTTGACTCGTGCCAGCAAAGACCTGTACCAAGACCGCAAACCG
TTTGTGGAGATGGGCAAGTGCTGGACTTATTTGCGCCTGAAGATGGGCAT
GCTTTCAGAGCTGCGCGCGAAGTACACGGCCACGGACAACCGTGCGGAGC
GCACCGTGCTGGCAAGCAAGGAGGTCGCTGGCGCCTCCTTTAAGGACCTG
CTCTCGGGCCTCAAGTCAAAGAGCCGTCAGCTCAAGGACGATGAGGCAGA
AGAGAGGGCGGCCAGACGTCGCGCAGAAGAAGAGGAGCGGGACCGCACCC
ACCGGGAGCGGGAGGCGGAGGAGGAGGAGGAGCGGCAACGTCGTTGGCAG
GAGGGATATAAGGGAAGGGAGACGCCTCAAGAGGGAGAGGCGAGGAAGGA
CAGCGCGCAGGAAGAGAAAGGGGGTATGGGGTGCCGCGAGTATCATGGTC
GTAGACAAAGAGGGAGAGGTCGAGACAGAGGAGAGGGAAGGATTGGATGG
AGGGTTTGGGGGCAAGACTACGAAGGCGAAGGAAGGGGACGGCATGAGAC
TGCAGGTGGCGGTGGAAATGCGGTGGTGCCGAAAAGGCCGAGGCAAGAGA
TGGAGGAAGACAGCGAACATAAAAGCCAACAGCGCTGGGATCGCAATCGC
AGGCACGGGGAGGTTGACGAAAGTGAAGACGACGAGTGGACGAGCCGAGC
CTCGGGGGATGAGGAGGACGAGGGCGGCCGGGGTTGGGTGTAGATGAGCG
TGCACCCACTGCTCCGTCTGGCGGACCTAACCGAGAACCTGATGCGGAAA
GACGCTAGGGTGGGATACCCTTCAGCCGAACCGGAGGTCGAACCAGAAAG
TTTTGGGTGGCTTTTTTCAGCCCAGCAGATCTTGCTGGATCATGTACTGG
GTGACGAGACACGGGTGGTTGTACAGCTGGGCGCCTACCTGGGCAAGACG
ACGCTCTTCATTGCAGAGCACGCCCCGCGGGCCTTGATCTTTGTGGTCGA
CCCCTGGGACAACGCCGTGCTCAAAACGGAGCCCTCACTCAACAAGAACT
TCGCCAACATCGACCTATTCGACCGTGTGCCCTTCTATCAGACATTCCTC
CGCAATACCTGGCACCTGGCGGCGCGGCGTCGGCCTGACGAGGGAGATCG
GCTGGTGGGCGTGGTACCACTCCGTATGGGGTTCGACGAAGGGCTGGCGC
TGCTCAAGGCCGATCTGAGCCTGCGGCCAGATGTCTTGTACTGGGAGGGC
TTTCCCGATGAGGCGGGGCTGCTGCAGACGCTGGGAACCGTGAAGGAAGC
CTTCCCTGGTGTGGTAGTGGTGGGCGACGGCTACAACTACCCGGAGGTGC
AGGCAGGCTTGACTCGTGCCAGCAAAGACCTGTACCAAGACCGCAAACCG
TTTGTGGAGATGGGCAAGTGCTGGACTTATTTGCGCCTGAAGATGGGCAT
GCTTTCAGAGCTGCGCGCGAAGTACACGGCCACGGACAACCGTGCGGAGC
GCACCGTGCTGGCAAGCAAGGAGGTCGCTGGCGCCTCCTTTAAGGACCTG
CTCTCGGGCCTCAAGTCAAAGAGCCGTCAGCTCAAGGACGATGAGGCAGA
AGAGAGGGCGGCCAGACGTCGCGCAGAAGAAGAGGAGCGGGACCGCACCC
ACCGGGAGCGGGAGGCGGAGGAGGAGGAGGAGCGGCAACGTCGTTGGCAG
GAGGGATATAAGGGAAGGGAGACGCCTCAAGAGGGAGAGGCGAGGAAGGA
CAGCGCGCAGGAAGAGAAAGGGGGTATGGGGTGCCGCGAGTATCATGGTC
GTAGACAAAGAGGGAGAGGTCGAGACAGAGGAGAGGGAAGGATTGGATGG
AGGGTTTGGGGGCAAGACTACGAAGGCGAAGGAAGGGGACGGCATGAGAC
TGCAGGTGGCGGTGGAAATGCGGTGGTGCCGAAAAGGCCGAGGCAAGAGA
TGGAGGAAGACAGCGAACATAAAAGCCAACAGCGCTGGGATCGCAATCGC
AGGCACGGGGAGGTTGACGAAAGTGAAGACGACGAGTGGACGAGCCGAGC
CTCGGGGGATGAGGAGGACGAGGGCGGCCGGGGTTGGGTGTAGATGAGCG
TGCACCCACTGCTCCGTCTGGCGGACCTAACCGAGAACCTGATGCGGAAA
GACGCTAGGGTGGGATACCCTTCAGCCGAACCGGAGGTCGAACCAGAAAG
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Synonyms
Publications