jgi.p|Nanoce1779_2|582643, mRNA_3568 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582643
Unique Name	mRNA_3568
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1904
Alignment location	scaffold_6:677287..679640 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582729
Track	FilteredModels2
ProteinId	582643

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:677287..679640 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582643	gene_3568	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582643	mRNA_3568-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3568	CDS_3568	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:677287..679640+
coding sequence from alignment at scaffold_6:677287..679640+

mRNA sequence

>mRNA_3568 ID=mRNA_3568|Name=jgi.p|Nanoce1779_2|582643|organism=Nannochloropsis oceanica|type=mRNA|length=1904bp
ATCGTTCCTCTTTGTATTCTCTCCACTGCGATCATCACTCGCTACGGGGT
ATGCATCTGTCCAACATTACCTCTCACAACCCTCACCACCCCCCTGGACG
TCTCTTCTTATTCCGCTTCTGTTGTCTTGAGTGACATGTCTTTTTAAGCA
CGGCTGCTAAATACCCGCTCTGGTCAATTTCACTATCCATCTTCTCCCCA
ACACCTAGACACCTAGGCCTCACGGCAGGCAAGCGGACGCACAAGGCTGC
ACCTATAAATCCTATTCTGAAGTTTCTTGTAAACTTGAGGTGGGAGATAA
GAGGCGCGGCTGCACATGCTTGGTTTGAGCGAAGCCTTGCATCGTACTTC
ACGACCCTTGCACCTAGCGGCCTCCCCCCTAAAAACCTCCATCAGCAAAA
AAAGCAAAAACCTCCATAAAACCTCCATCAGCAAAACTTGACGCGCCGAC
ATTTGCGCTTGACGAGTATTTGCAAGAAAGGGGTGATCTCAATGTTCTTG
GCGCAAACATGCTAATGTCGTTGAGGGAGGGAGTCGGCGGCTCAGGCTAG
GGATCCTTACGTGAGGAGTCCTCGAGCCACACCAACCACGACGATGGACA
TCCGCCATGCCGCCGTCTTTTGCTCATTCAGGTATAATGCTAATCTCTTT
TCTCCTCCCTGTCCTTGTCAACAGAAATGCTCGCGTTAAAGCGCCTTGCC
TCGGCCTCTGCTGCCCAGCGCCGGGCCCTGGGTGCCGTGTCATCCGTGCG
GCGCATGGGCACTCTTGGAGAGGAGCTCAAAGGCGCTCCAAGCAAGGAGG
AGGAGGCGAAGTACGCCAAGGTGATCAAGGTAGGGGATAAACTTTACGGC
GTGCCTGCTGTTCAGGAGGGCACCTTCGGGCTGGATCTTCAGCAGCAGGT
CGGGCGGCGATGGGAGGAATTGGTGTACGAGCTTAACGGCGAGGTACTTT
TCAACCGCGACCCCGTATTTGCACTCCCCGATCAAGGCACCAAGAGTAAC
CCTGTGCTGGTTCCGTCCGGTGAGAACGAGCGTATCGTGGGCTATGAGGA
CCCGCATGTGCACCAGGTTTTCTGGTTCAAGCTGCGCAAGGGAGACCTGG
CATATGTGCCCAAGATCGACAAATATTTTTCCCTTTACAAGATCGACTAA
GGTCTAACAATCTGGACCTGCTGGCTGGAGGGATTGGTAGGGACGAGGGG
AGAGTGAGGACAACGATATATGTGGTGCGTTGTCTGGTTTGGAAGTATGG
TTTTAAACAGGATTTTTGCCCAGCCTTGTGTGTTCCCTCTCCTCCATACA
CTCGTCTTTTTCCGCATCTTGTGCTTTTCAAAGGATGAAGCGAAGAAAGA
AAGGACGACAGTGCATTCCTGTTCCATACTTTTCATATGGGGGGTCTGAA
GGACCGCTCGAGGACAGAGAAACACTAGGCATTGGTCGTGGCTACACTGG
CAAGATTCTGAAGCAGAGGGGCCGAAAAGAAGAAGAAAATATCTAAAGAC
GACGTCGCCTTTCGGGACTCTTGTTTTGCCTCATGCTTTGTTTGTAACCC
GCGGAAAGGCCTATATCTACACCCAACCCCGGCCGCCCTCGTCCTCCTCA
TCCCCCGAGGCTCGGCTCGTCCACTCGTCGTCTTCACTTTCGTCAACCTC
CCCGTGCCTGCGATTGCGATCCCAGCGCTGTTGGCTTTTATGTTCGCTGT
CTTCCTCCATCTCTTGCCTCGGCCTTTTCGGCACCACCGCATTTCCACCG
CCACCTGCAGTCTCATGCCGTCCCCTTCCTTCGCCTTCGTAGTCTTGCCC
CCAAACCCTCCATCCAATCCTTCCCTCTCCTCTGTCTCGACCTCTCCCTC
TTTGTCTACGACCATGATACTCGCGGCACCCCATACCCCCTTTCTCTTCC
TGCG

protein sequence of jgi.p|Nanoce1779_2|582643

>mRNA_3568-protein ID=mRNA_3568-protein|Name=jgi.p|Nanoce1779_2|582643|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MLALKRLASASAAQRRALGAVSSVRRMGTLGEELKGAPSKEEEAKYAKVI
KVGDKLYGVPAVQEGTFGLDLQQQVGRRWEELVYELNGEVLFNRDPVFAL
PDQGTKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLAYVPKIDKY
FSLYKID*

mRNA from alignment at scaffold_6:677287..679640+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3568 ID=mRNA_3568|Name=jgi.p|Nanoce1779_2|582643|organism=Nannochloropsis oceanica|type=mRNA|length=2354bp|location=Sequence derived from alignment at scaffold_6:677287..679640+ (Nannochloropsis oceanica)
ATCGTTCCTCTTTGTATTCTCTCCACTGCGATCATCACTCGCTACGGGGT
ATGCATCTGTCCAACATTACCTCTCACAACCCTCACCACCCCCCTGGACG
TCTCTTCTTATTCCGCTTCTGTTGTCTTGAGTGACATGTCTTTTTAAGCA
CGGCTGCTAAATACCCGCTCTGGTCAATTTCACTATCCATCTTCTCCCCA
ACACCTAGACACCTAGGCCTCACGGCAGGCAAGCGGACGCACAAGGCTGC
ACCTATAAATCCTATTCTGAAGTTTCTTGTAAACTTGAGGTGGGAGATAA
GAGGCGCGGCTGCACATGCTTGGTTTGAGCGAAGCCTTGCATCGTACTTC
ACGACCCTTGCACCTAGCGGCCTCCCCCCTAAAAACCTCCATCAGCAAAA
AAAGCAAAAACCTCCATAAAACCTCCATCAGCAAAACTTGACGCGCCGAC
ATTTGCGCTTGACGAGTATTTGCAAGAAAGGGGTGATCTCAATGTTCTTG
GCGCAAACATGCTAATGTCGTTGAGGGAGGGAGTCGGCGGCTCAGGCTAG
GGATCCTTACGTGAGGAGTCCTCGAGCCACACCAACCACGACGATGGACA
TCCGCCATGCCGCCGTCTTTTGCTCATTCAGGTATAATGCTAATCTCTTT
TCTCCTCCCTGTCCTTGTCAACAGAAATGCTCGCGTTAAAGCGCCTTGCC
TCGGCCTCTGCTGCCCAGCGCCGGGCCCTGGGTGCCGTGTCATCCGTGCG
GCGCATGGGCACTCTTGGAGAGGAGCTCAAAGGCGCTCCAAGCAAGGAGG
AGGAGGCGAAGTACGCCAAGGTGATCAAGGTAGGGGATAAACTTTACGGC
GTGCCTGCTGTTCAGGAGGGCACCTTCGGGCTGGATCTTCAGCAGCAGGT
CGGGCGGCGATGGGAGGAATTGGTGTACGAGCTTAACGGCGAGGTACGTG
CGTGGTTTGGTGGGAGATAGGAGCGCGCACTCGCGCAAGCATGAACTGAG
GTAGGGATATTTGTGTTGCTCATGCGCTCTGAAGGTGTGATTGGTGTGGG
GCTATCCTTCTTTCAATGGTTTCATGCCAATGTGCGACACAAATCCAACG
AAACGCAGTTCATAAACGGGATGCTATTCTTTTATTCCTTACTCACCTCC
TTCATACATGCATAGGTACTTTTCAACCGCGACCCCGTATTTGCACTCCC
CGATCAAGGCACCAAGAGTAACCCTGTGCTGGTAAGTCAAGTTGGAGAAC
GGAGCGAATTGCAGGATTCATCGATGTTGAGTCTATTGACATAATTCTGT
TGACTAAAGTGTTTACGAGTTGCGTTTTCAGGTGTAGACCCTGTGGAACG
AAGAAGGGCGCACTCTAGTCTGTATGCCGGTGTTTGTAAAAAATCACTCA
CCCTTTTCTGTATTCTTCTGTATTCTTTCCCGTTGTACCCGAACATGTAA
TAATTATAGGTTCCGTCCGGTGAGAACGAGCGTATCGTGGGCTATGAGGA
CCCGCATGTGCACCAGGTTTTCTGGTTCAAGCTGCGCAAGGGAGACCTGG
CATATGTGCCCAAGATCGACAAATATTTTTCCCTTTACAAGATCGACTAA
GGTCTAACAATCTGGACCTGCTGGCTGGAGGGATTGGTAGGGACGAGGGG
AGAGTGAGGACAACGATATATGTGGTGCGTTGTCTGGTTTGGAAGTATGG
TTTTAAACAGGATTTTTGCCCAGCCTTGTGTGTTCCCTCTCCTCCATACA
CTCGTCTTTTTCCGCATCTTGTGCTTTTCAAAGGATGAAGCGAAGAAAGA
AAGGACGACAGTGCATTCCTGTTCCATACTTTTCATATGGGGGGTCTGAA
GGACCGCTCGAGGACAGAGAAACACTAGGCATTGGTCGTGGCTACACTGG
CAAGATTCTGAAGCAGAGGGGCCGAAAAGAAGAAGAAAATATCTAAAGAC
GACGTCGCCTTTCGGGACTCTTGTTTTGCCTCATGCTTTGTTTGTAACCC
GCGGAAAGGCCTATATCTACACCCAACCCCGGCCGCCCTCGTCCTCCTCA
TCCCCCGAGGCTCGGCTCGTCCACTCGTCGTCTTCACTTTCGTCAACCTC
CCCGTGCCTGCGATTGCGATCCCAGCGCTGTTGGCTTTTATGTTCGCTGT
CTTCCTCCATCTCTTGCCTCGGCCTTTTCGGCACCACCGCATTTCCACCG
CCACCTGCAGTCTCATGCCGTCCCCTTCCTTCGCCTTCGTAGTCTTGCCC
CCAAACCCTCCATCCAATCCTTCCCTCTCCTCTGTCTCGACCTCTCCCTC
TTTGTCTACGACCATGATACTCGCGGCACCCCATACCCCCTTTCTCTTCC
TGCG

Coding sequence (CDS) from alignment at scaffold_6:677287..679640+

>mRNA_3568 ID=mRNA_3568|Name=jgi.p|Nanoce1779_2|582643|organism=Nannochloropsis oceanica|type=CDS|length=1422bp|location=Sequence derived from alignment at scaffold_6:677287..679640+ (Nannochloropsis oceanica)
ATGCTCGCGTTAAAGCGCCTTGCCTCGGCCTCTGCTGCCCAGCGCCGGGC
CCTGGGTGCCGTGTCATCCGTGCGGCGCATGGGCACTCTTGGAGAGGAGC
TCAAAGGCGCTCCAAGCAAGGAGGAGGAGGCGAAGTACGCCAAGGTGATC
AAGGTAGGGGATAAACTTTACGGCGTGCCTGCTGTTCAGGAGGGCACCTT
CGGGCTGGATCTTCAGCAGCAGGTCGGGCGGCGATGGGAGGAATTGGTGT
ACGAGCTTAACGGCGAGGTACTTTTCAACCGCGACCCCGTATTTGCACTC
CCCGATCAAGGCACCAAGAGTAACCCTGTGCTGGTTCCGTCCGGTGAGAA
CGAGCGTATCGTGGGCTATGAGGACCCGCATGTGCACCAGGTTTTCTGGT
TCAAGCTGCGCAAGGGAGACCTGGCATATGTGCCCAAGATCGACAAATAT
TTTTCCCTTTACAAGATCGACTAAATGCTCGCGTTAAAGCGCCTTGCCTC
GGCCTCTGCTGCCCAGCGCCGGGCCCTGGGTGCCGTGTCATCCGTGCGGC
GCATGGGCACTCTTGGAGAGGAGCTCAAAGGCGCTCCAAGCAAGGAGGAG
GAGGCGAAGTACGCCAAGGTGATCAAGGTAGGGGATAAACTTTACGGCGT
GCCTGCTGTTCAGGAGGGCACCTTCGGGCTGGATCTTCAGCAGCAGGTCG
GGCGGCGATGGGAGGAATTGGTGTACGAGCTTAACGGCGAGGTACTTTTC
AACCGCGACCCCGTATTTGCACTCCCCGATCAAGGCACCAAGAGTAACCC
TGTGCTGGTTCCGTCCGGTGAGAACGAGCGTATCGTGGGCTATGAGGACC
CGCATGTGCACCAGGTTTTCTGGTTCAAGCTGCGCAAGGGAGACCTGGCA
TATGTGCCCAAGATCGACAAATATTTTTCCCTTTACAAGATCGACTAAAT
GCTCGCGTTAAAGCGCCTTGCCTCGGCCTCTGCTGCCCAGCGCCGGGCCC
TGGGTGCCGTGTCATCCGTGCGGCGCATGGGCACTCTTGGAGAGGAGCTC
AAAGGCGCTCCAAGCAAGGAGGAGGAGGCGAAGTACGCCAAGGTGATCAA
GGTAGGGGATAAACTTTACGGCGTGCCTGCTGTTCAGGAGGGCACCTTCG
GGCTGGATCTTCAGCAGCAGGTCGGGCGGCGATGGGAGGAATTGGTGTAC
GAGCTTAACGGCGAGGTACTTTTCAACCGCGACCCCGTATTTGCACTCCC
CGATCAAGGCACCAAGAGTAACCCTGTGCTGGTTCCGTCCGGTGAGAACG
AGCGTATCGTGGGCTATGAGGACCCGCATGTGCACCAGGTTTTCTGGTTC
AAGCTGCGCAAGGGAGACCTGGCATATGTGCCCAAGATCGACAAATATTT
TTCCCTTTACAAGATCGACTAA

Synonyms

Publications