jgi.p|Nanoce1779_2|365222, mRNA_3567 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|365222
Unique NamemRNA_3567
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length941
Alignment locationscaffold_6:674331..675870 +

Link to JBrowse

Properties
Property NameValue
TranscriptId365308
TrackFilteredModels2
ProteinId365222
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:674331..675870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|365222gene_3567Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|365222mRNA_3567-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3567CDS_3567Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3567 ID=mRNA_3567|Name=jgi.p|Nanoce1779_2|365222|organism=Nannochloropsis oceanica|type=mRNA|length=941bp
CGTGGCCTGCATGGTCTCCTCGGGCTTGATCTTGGCATGAAACGAAATCA
ATTGCCTGTGTTTAGGTCGTGAATTACTTGAGTCGCCCCACTTCTGCTAG
CGCGTTAGCCTCGGCTGCCTTTGCATTGTATAAATCCGATCGCATTGTGG
AAAGTTGTGCATCGGCTTCGTGAGTTACCTTATGCGTAATGTCTCCCCAT
CGATCCAAAATAGCACGGCGTTCGCTAGCAGGCAAGGCATTAGCCACATA
CAGGACTGCGCTGGTGCGCCACTCCTTCCAGCTTGTCCCAGCGGTCAAGG
CTTCACCACTTGATGGAGATGAGGCGACCGCTGTCACCTTTGCCGGTGCA
GCCAAAGCAGCACGGCGGTACATGATATTGCCGCCCTCCCCGAGGCCTTT
GCCTACGACTGTGCCTGATATGTGTTGGTATAACCCCGAGACCTGTTTAC
GCGTACACCCTCTTAGCAACAGGGTACTGGGGGAACGATTCCACCCTGCT
TTTCCCCCGAGATCCGTAGGTGCCCTTGGGACGGGCGGCGGGGTTCACGC
AGCTCCAAATACAGTGATGTGGCGTCGACACAGGACAGTCACCAACTTCG
CTACAAATCGTGTGCATGAGGTTGGTGGTCAGTCAAAATCGACCTGGCTT
GGTGGGCTTCATGACACATCGCCAAGGCCCGGGCTTAACATGCATGGCTA
TCGTGGCCGAGGATGTCGTCGAGGTTTTCCAGGTGCCCTTGGCTTGGTAC
ATGAGGTTGTTTGGTTGATATTTGACCAGGAAGTAAACTATAGTGCAAGC
AAGCAGTCAGAAAGAAAGAAGATCAGAGCATCGAAATGAGCGAGCACCTC
TCTTGTTCTAATTCGATAAATTCATCTTGAACACAGAAGTGGCGCCTCTT
GAGATTAACATCATCAAGCAATGTGGGATGTAACGGCAGAT
back to top

protein sequence of jgi.p|Nanoce1779_2|365222

>mRNA_3567-protein ID=mRNA_3567-protein|Name=jgi.p|Nanoce1779_2|365222|organism=Nannochloropsis oceanica|type=polypeptide|length=217bp
MSPHRSKIARRSLAGKALATYRTALVRHSFQLVPAVKASPLDGDEATAVT
FAGAAKAARRYMILPPSPRPLPTTVPDMCWYNPETCLRVHPLSNRVLGER
FHPAFPPRSVGALGTGGGVHAAPNTVMWRRHRTVTNFATNRVHEVGGQSK
STWLGGLHDTSPRPGLNMHGYRGRGCRRGFPGALGLVHEVVWLIFDQEVN
YSASKQSERKKIRASK*
back to top

mRNA from alignment at scaffold_6:674331..675870+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3567 ID=mRNA_3567|Name=jgi.p|Nanoce1779_2|365222|organism=Nannochloropsis oceanica|type=mRNA|length=1540bp|location=Sequence derived from alignment at scaffold_6:674331..675870+ (Nannochloropsis oceanica)
CGTGGCCTGCATGGTCTCCTCGGGCTTGATCTTGGCATGAAACGAAATCA
ATTGCCTGTGTTTAGGTCGTGAAATCGATAAATTTCGAGAGAGTGTGGTG
GGAAGGAGGGAGAGCATAAGGACGGAGCAACATATATCCTTATCCGTTTG
TTGCTGCAACTAAAAGGCTTTCTGTGGTTTAAAAAAGGGGGGAAAGAATA
AATATTATTTGATGAAGCAGGGAGTTGCAGGGGAACGGGACGGCGCGTAC
ATGCACATGCCTGAGGAGAAAATGGTAAAAAAGGAAGGAGGTTTGATGGA
ATTTAATGAGTCGCTAACCAATCTGAAACAGGAGTCTTCTAGACAACAAA
TGGTACACTTCTCGCACCGACGCCCCAACATGCACCCCGATGCACCCACA
GATTTTCGACCGTCTCGAGAAATATAATGAGGGCCACGCCAAAAAGCATG
ACCCGCACGGTCCACACGATAAATTGCAAGTAAATGTGCCGTGCCGCATT
GTCATACATAGTACTTACTTGAGTCGCCCCACTTCTGCTAGCGCGTTAGC
CTCGGCTGCCTTTGCATTGTATAAATCCGATCGCATTGTGGAAAGTTGTG
CATCGGCTTCGTGAGTTACCTTATGCGTAATGTCTCCCCATCGATCCAAA
ATAGCACGGCGTTCGCTAGCAGGCAAGGCATTAGCCACATACAGGACTGC
GCTGGTGCGCCACTCCTTCCAGCTTGTCCCAGCGGTCAAGGCTTCACCAC
TTGATGGAGATGAGGCGACCGCTGTCACCTTTGCCGGTGCAGCCAAAGCA
GCACGGCGGTACATGATATTGCCGCCCTCCCCGAGGCCTTTGCCTACGAC
TGTGCCTGATATGTGTTGGTATAACCCCGAGACCTGTTTACGCGTACACC
CTCTTAGCAACAGGGTACTGGGGGAACGATTCCACCCTGCTTTTCCCCCG
AGATCCGTAGGTGCCCTTGGGACGGGCGGCGGGGTTCACGCAGCTCCAAA
TACAGTGATGTGGCGTCGACACAGGACAGTCACCAACTTCGCTACAAATC
GTGTGCATGAGGTTGGTGGTCAGTCAAAATCGACCTGGCTTGGTGGGCTT
CATGACACATCGCCAAGGCCCGGGCTTAACATGCATGGCTATCGTGGCCG
AGGATGTCGTCGAGGTTTTCCAGGTGCCCTTGGCTTGGTACATGAGGTTG
TTTGGTTGATATTTGACCAGGAAGTAAACTATAGTGCAAGCAAGCAGTCA
GAAAGAAAGAAGATCAGAGCATCGAAATGAGCGAGCACCTCTCTTGTTCT
AATTCGATAAATTCATCTTGAACACAGAAGTGGCGCCTCTTGAGATTAAC
ATCATCAAGCAATGTGGGATGTAACGGCAGAGTAAGAGAAAAAATACTGA
AGGTTGAAAAAATGTATAAACATGTAAACATATATCTACATATTGTACAC
AAAGTGTAATCGTATGACCGGGAGGGATCGGAACAGATCGATTTTATAAC
TGCTCATCAGCGACCAACAACCTTATGATGTGTGGCTAGT
back to top

Coding sequence (CDS) from alignment at scaffold_6:674331..675870+

>mRNA_3567 ID=mRNA_3567|Name=jgi.p|Nanoce1779_2|365222|organism=Nannochloropsis oceanica|type=CDS|length=651bp|location=Sequence derived from alignment at scaffold_6:674331..675870+ (Nannochloropsis oceanica)
ATGTCTCCCCATCGATCCAAAATAGCACGGCGTTCGCTAGCAGGCAAGGC
ATTAGCCACATACAGGACTGCGCTGGTGCGCCACTCCTTCCAGCTTGTCC
CAGCGGTCAAGGCTTCACCACTTGATGGAGATGAGGCGACCGCTGTCACC
TTTGCCGGTGCAGCCAAAGCAGCACGGCGGTACATGATATTGCCGCCCTC
CCCGAGGCCTTTGCCTACGACTGTGCCTGATATGTGTTGGTATAACCCCG
AGACCTGTTTACGCGTACACCCTCTTAGCAACAGGGTACTGGGGGAACGA
TTCCACCCTGCTTTTCCCCCGAGATCCGTAGGTGCCCTTGGGACGGGCGG
CGGGGTTCACGCAGCTCCAAATACAGTGATGTGGCGTCGACACAGGACAG
TCACCAACTTCGCTACAAATCGTGTGCATGAGGTTGGTGGTCAGTCAAAA
TCGACCTGGCTTGGTGGGCTTCATGACACATCGCCAAGGCCCGGGCTTAA
CATGCATGGCTATCGTGGCCGAGGATGTCGTCGAGGTTTTCCAGGTGCCC
TTGGCTTGGTACATGAGGTTGTTTGGTTGATATTTGACCAGGAAGTAAAC
TATAGTGCAAGCAAGCAGTCAGAAAGAAAGAAGATCAGAGCATCGAAATG
A
back to top
Synonyms
Publications