jgi.p|Nanoce1779_2|582623, mRNA_3566 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582623
Unique NamemRNA_3566
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1759
Alignment locationscaffold_6:672742..674793 -

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Properties
Property NameValue
TranscriptId582709
TrackFilteredModels2
ProteinId582623
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:672742..674793 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582623gene_3566Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582623mRNA_3566-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3566CDS_3566Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3566 ID=mRNA_3566|Name=jgi.p|Nanoce1779_2|582623|organism=Nannochloropsis oceanica|type=mRNA|length=1759bp
GGACCGTGCGGGTCATGCTTTTTGGCGTGGCCCTCATTATATTTCTCGAG
ACGGTCGAAAATCTGTGGGTGCATCGGGGTGCATGTTGGGGCGTCGGTGC
GAGAAGTGTACCATTTGTTGTCTAGAAGACTCCTGTTTCAGATTGGTTAG
CGACTCATTAAATTCCATCAAACCTCCTTCCTTTTTTACCATTTTCTCCT
CAGGCATGTGCATGTACGCGCCGTCCCGTTCCCCTGCAACTCCCTGCTTC
ATCAAATAATATTTATTCTTTCCCCCCTTTTTTAAACCACAGAAAGCCTT
TTAGTTGCAGCAACAAACGGATAAGGATATATGTTGCTCCGTCCTTATGC
TCTCCCTCCTTCCCACCACACTCTCTCGAAATTTATCGATTTCACGACCT
AAACACAGGCAATTGATTTCGTTTCATGCCAAGATCAAGCCCGAGGAGAC
CATGCAGGCCACGCATCCTGTCTTGGGCCAGCTCGTGGCCGACATGGGCT
ACAAGAAGATCTACTGTGCCTCCATCAAGCAACTCGGGGATGTTGTGATC
TGGGAGCAACAGCGTATTCTGCGGAAGGAGAGAGCCCATGCAATAGCACG
AGAGAAAGCCCGACGGTCGTTTCCAGTCAAATTTCCCGGCATTATCACCC
TCTACCAGCTGCCAGACGGGCAGTACAAGCTTCTGGATGGACAACACAGG
TTGGCGGCTTTAAAAATACTGGCTGACACAGGAATCATTAACAAAGACAC
GAATTTCTGCCTCGTGGAGGTGTTTGCCCTTGAAAAAGAGTCGGAAGCCC
GCGCCTTGTTCCTTGAAATTAACAGCGCCATGCCTGTGAAGCTCATCGAC
ATGCCGGACGGAATAGGGTCGCGACCGGACATCAAATGTATCATCGACGG
GGCCATGAATAGAATGCTGTCCAGATACCCGGCCTTTTTCAAGAGCAGCC
TCAATCCGAAATTGCCGCACATCAACATCGACAACCTCCGGGACGATCTT
TATCAGCACCACGTCGTAGAGAGGCAAGGGCTGAAAACGGCCAGAGAGTT
AGAAGAGTGGTTGCAGCAAGTGAACGAGATTCTTTCGCAAAAGCACGACA
AGGATTGGAAGCTTACTCTCAAGGGTCGCAATCCATTGGTGGTGGAAAAG
GCACTCGACAAGGCGCGCAAAGGCAGTTTTTTCCTAGGTATGGACCACAC
CTGGTTAGGTTGGGATGCATGTTGATGAGGATAAGAAATTGCGGAAGTGG
GAGATTTCTTGATGAATACCGCCCACTTACCCTAGCATGCTCGTTATTCT
GGAGTCAAACCTTTTTAAAAAATGTGAGCCCTTTTTTCGAGATGAGGCCT
GAAGTTATCAGTCGCAGCGAAGGCTTAGGATTGCTGACGCGATCCCCAGT
TTAGCTTGAGGTTTTGGATGGGATAACGGTAGGATTTGTGGGAATTCCCT
GATTGCCCTGATTGCCAATGCCTTTCAGCTGTGACACATTCACATGGCAT
GTGAAGGCTGATGTCCTCTGTTGTCTTGAAAGGGGAAATTTGTGCTTGTT
AACAGAAGGGAGATAGGGCCCCTGAACAAGGAAGATAAATAAGCTTCCGG
AGATTTGGAGGTTCTCCTTTTTGAATCCAAGCTCTTCTAGCAATAATGAG
AGGCAAAGGCTGAATGTATTGAGGTGTATGGATGGGCAAGGGGAAGGTCA
GACGTTTCATTTCCGAAATTGCTGTGTTTGAAAGTAAAATGCAAATATGG
AAGGACAAA
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protein sequence of jgi.p|Nanoce1779_2|582623

>mRNA_3566-protein ID=mRNA_3566-protein|Name=jgi.p|Nanoce1779_2|582623|organism=Nannochloropsis oceanica|type=polypeptide|length=293bp
MLSLLPTTLSRNLSISRPKHRQLISFHAKIKPEETMQATHPVLGQLVADM
GYKKIYCASIKQLGDVVIWEQQRILRKERAHAIAREKARRSFPVKFPGII
TLYQLPDGQYKLLDGQHRLAALKILADTGIINKDTNFCLVEVFALEKESE
ARALFLEINSAMPVKLIDMPDGIGSRPDIKCIIDGAMNRMLSRYPAFFKS
SLNPKLPHINIDNLRDDLYQHHVVERQGLKTARELEEWLQQVNEILSQKH
DKDWKLTLKGRNPLVVEKALDKARKGSFFLGMDHTWLGWDAC*
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mRNA from alignment at scaffold_6:672742..674793-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3566 ID=mRNA_3566|Name=jgi.p|Nanoce1779_2|582623|organism=Nannochloropsis oceanica|type=mRNA|length=2052bp|location=Sequence derived from alignment at scaffold_6:672742..674793- (Nannochloropsis oceanica)
GGACCGTGCGGGTCATGCTTTTTGGCGTGGCCCTCATTATATTTCTCGAG
ACGGTCGAAAATCTGTGGGTGCATCGGGGTGCATGTTGGGGCGTCGGTGC
GAGAAGTGTACCATTTGTTGTCTAGAAGACTCCTGTTTCAGATTGGTTAG
CGACTCATTAAATTCCATCAAACCTCCTTCCTTTTTTACCATTTTCTCCT
CAGGCATGTGCATGTACGCGCCGTCCCGTTCCCCTGCAACTCCCTGCTTC
ATCAAATAATATTTATTCTTTCCCCCCTTTTTTAAACCACAGAAAGCCTT
TTAGTTGCAGCAACAAACGGATAAGGATATATGTTGCTCCGTCCTTATGC
TCTCCCTCCTTCCCACCACACTCTCTCGAAATTTATCGATTTCACGACCT
AAACACAGGCAATTGATTTCGTTTCATGCCAAGATCAAGCCCGAGGAGAC
CATGCAGGCCACGCATCCTGTCTTGGGCCAGCTCGTGGCCGACATGGGCT
ACAAGAAGATCTACTGTGCCTCCATCAAGCAACTCGGGGATGTTGTGATC
TGGGAGCAACAGCGTATTCTGCGGAAGGAGAGAGCCCATGCAATAGCACG
AGAGAAAGCCCGACGGTCGTTTCCAGTCAAATTTCCCGGCATTATCACCC
TCTACCAGCTGCCAGACGGGCAGTACAAGCTTCTGGATGGACAACACAGG
TTGGCGGCTTTAAAAATACTGGCTGACACAGGAATCATTAACAAAGACAC
GAATTTCTGCCTCGTGGAGGTGTTTGCCCTTGAAAAAGAGTCGGAAGCCC
GCGCCTTGTTCCTTGAAATTAACAGCGCCATGCCTGTGAAGCTCATCGAC
ATGCCGGACGGAATAGGGTCGCGACCGGACATCAAATGTATCATCGACGG
GGCCATGAATAGAATGCTGTCCAGATACCCGGCCTTTTTCAAGAGCAGCC
TCAATCCGAAATTGCCGCACATCAACATCGACAACCTCCGGGACGATCTT
TATCAGGTAAAGAATAAGAGGCAGAGGAGAGGGGAGGGGGAGAGAAGAGA
GGCATGTATCTCAAATCGGCAATCATAAACCGACCTGACTTGTTTTCAAG
AATTAAATCGTAGGGAGGGATTTTAATGACACGTGCCGATAAGGGAAGTA
CAGAGAGTTATCCCCATATGAGCACGGTTTACAGGTTTCGTTTTCTTCAA
CCACGTTGGGTGTCAAAGTGATCGATCTATTGCGATCGATAGTAACTGAA
GCCTCTTTACGGACCAATTCAGCCATCAACTGACAAATCATCAACACAGC
ACCACGTCGTAGAGAGGCAAGGGCTGAAAACGGCCAGAGAGTTAGAAGAG
TGGTTGCAGCAAGTGAACGAGATTCTTTCGCAAAAGCACGACAAGGATTG
GAAGCTTACTCTCAAGGGTCGCAATCCATTGGTGGTGGAAAAGGCACTCG
ACAAGGCGCGCAAAGGCAGTTTTTTCCTAGGTATGGACCACACCTGGTTA
GGTTGGGATGCATGTTGATGAGGATAAGAAATTGCGGAAGTGGGAGATTT
CTTGATGAATACCGCCCACTTACCCTAGCATGCTCGTTATTCTGGAGTCA
AACCTTTTTAAAAAATGTGAGCCCTTTTTTCGAGATGAGGCCTGAAGTTA
TCAGTCGCAGCGAAGGCTTAGGATTGCTGACGCGATCCCCAGTTTAGCTT
GAGGTTTTGGATGGGATAACGGTAGGATTTGTGGGAATTCCCTGATTGCC
CTGATTGCCAATGCCTTTCAGCTGTGACACATTCACATGGCATGTGAAGG
CTGATGTCCTCTGTTGTCTTGAAAGGGGAAATTTGTGCTTGTTAACAGAA
GGGAGATAGGGCCCCTGAACAAGGAAGATAAATAAGCTTCCGGAGATTTG
GAGGTTCTCCTTTTTGAATCCAAGCTCTTCTAGCAATAATGAGAGGCAAA
GGCTGAATGTATTGAGGTGTATGGATGGGCAAGGGGAAGGTCAGACGTTT
CATTTCCGAAATTGCTGTGTTTGAAAGTAAAATGCAAATATGGAAGGACA
AA
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Coding sequence (CDS) from alignment at scaffold_6:672742..674793-

>mRNA_3566 ID=mRNA_3566|Name=jgi.p|Nanoce1779_2|582623|organism=Nannochloropsis oceanica|type=CDS|length=1758bp|location=Sequence derived from alignment at scaffold_6:672742..674793- (Nannochloropsis oceanica)
CACCACGTCGTAGAGAGGCAAGGGCTGAAAACGGCCAGAGAGTTAGAAGA
GTGGTTGCAGCAAGTGAACGAGATTCTTTCGCAAAAGCACGACAAGGATT
GGAAGCTTACTCTCAAGGGTCGCAATCCATTGGTGGTGGAAAAGGCACTC
GACAAGGCGCGCAAAGGCAGTTTTTTCCTAGGTATGGACCACACCTGGTT
AGGTTGGGATGCATGTTGAATGCTCTCCCTCCTTCCCACCACACTCTCTC
GAAATTTATCGATTTCACGACCTAAACACAGGCAATTGATTTCGTTTCAT
GCCAAGATCAAGCCCGAGGAGACCATGCAGGCCACGCATCCTGTCTTGGG
CCAGCTCGTGGCCGACATGGGCTACAAGAAGATCTACTGTGCCTCCATCA
AGCAACTCGGGGATGTTGTGATCTGGGAGCAACAGCGTATTCTGCGGAAG
GAGAGAGCCCATGCAATAGCACGAGAGAAAGCCCGACGGTCGTTTCCAGT
CAAATTTCCCGGCATTATCACCCTCTACCAGCTGCCAGACGGGCAGTACA
AGCTTCTGGATGGACAACACAGGTTGGCGGCTTTAAAAATACTGGCTGAC
ACAGGAATCATTAACAAAGACACGAATTTCTGCCTCGTGGAGGTGTTTGC
CCTTGAAAAAGAGTCGGAAGCCCGCGCCTTGTTCCTTGAAATTAACAGCG
CCATGCCTGTGAAGCTCATCGACATGCCGGACGGAATAGGGTCGCGACCG
GACATCAAATGTATCATCGACGGGGCCATGAATAGAATGCTGTCCAGATA
CCCGGCCTTTTTCAAGAGCAGCCTCAATCCGAAATTGCCGCACATCAACA
TCGACAACCTCCGGGACGATCTTTATCAGCACCACGTCGTAGAGAGGCAA
GGGCTGAAAACGGCCAGAGAGTTAGAAGAGTGGTTGCAGCAAGTGAACGA
GATTCTTTCGCAAAAGCACGACAAGGATTGGAAGCTTACTCTCAAGGGTC
GCAATCCATTGGTGGTGGAAAAGGCACTCGACAAGGCGCGCAAAGGCAGT
TTTTTCCTAGGTATGGACCACACCTGGTTAGGTTGGGATGCATGTTGAAT
GCTCTCCCTCCTTCCCACCACACTCTCTCGAAATTTATCGATTTCACGAC
CTAAACACAGGCAATTGATTTCGTTTCATGCCAAGATCAAGCCCGAGGAG
ACCATGCAGGCCACGCATCCTGTCTTGGGCCAGCTCGTGGCCGACATGGG
CTACAAGAAGATCTACTGTGCCTCCATCAAGCAACTCGGGGATGTTGTGA
TCTGGGAGCAACAGCGTATTCTGCGGAAGGAGAGAGCCCATGCAATAGCA
CGAGAGAAAGCCCGACGGTCGTTTCCAGTCAAATTTCCCGGCATTATCAC
CCTCTACCAGCTGCCAGACGGGCAGTACAAGCTTCTGGATGGACAACACA
GGTTGGCGGCTTTAAAAATACTGGCTGACACAGGAATCATTAACAAAGAC
ACGAATTTCTGCCTCGTGGAGGTGTTTGCCCTTGAAAAAGAGTCGGAAGC
CCGCGCCTTGTTCCTTGAAATTAACAGCGCCATGCCTGTGAAGCTCATCG
ACATGCCGGACGGAATAGGGTCGCGACCGGACATCAAATGTATCATCGAC
GGGGCCATGAATAGAATGCTGTCCAGATACCCGGCCTTTTTCAAGAGCAG
CCTCAATCCGAAATTGCCGCACATCAACATCGACAACCTCCGGGACGATC
TTTATCAG
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Synonyms
Publications