jgi.p|Nanoce1779_2|582620, mRNA_3565 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582620
Unique Name	mRNA_3565
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2186
Alignment location	scaffold_6:670301..672732 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582706
Track	FilteredModels2
ProteinId	582620

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:670301..672732 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582620	gene_3565	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582620	mRNA_3565-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3565	CDS_3565	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:670301..672732+
coding sequence from alignment at scaffold_6:670301..672732+

mRNA sequence

>mRNA_3565 ID=mRNA_3565|Name=jgi.p|Nanoce1779_2|582620|organism=Nannochloropsis oceanica|type=mRNA|length=2186bp
ACACCAGCCGCACAACCAAGCCGATGTGGTCCAAAGATGCCATGCGGATC
CTACAGGGAGCCACCCTTGTCCTCGAGAATATGGCGCGCGAGAATGCCAC
TGCCCCGCGCAGTTCCATCACACAGCTCGTCAATACGGCCAAAGATGTTG
CGGCGGCAGCCCGGGAACAGCAGCAAAAGCGCCAGCATCACCCACCATTG
TTACCGTCCGTATCCGTGGGAGATGCTCCGGCCGAAACTACAAGTCTTCC
GCCCACCCAGCCAAAACATACCAAGGCACCATCACAACCCGCAACGTGCT
TGCCATCAGCTCCCCCACCACCTGCATTGCTCCACGACACGCCCAAACGT
CGTCCTTTCCCCACTTTTTACAAGTCGTCCGACCCGCCCGGCCCCTCATC
GGCACCATTGCCACCTCGACAAACCGAAAAGGATACCGTTGCATTCTCGC
CACAGTCGCAGCCAAAATTTCCTACACAGTTCGACTCCGTTGCTCTTCCT
CCCTCCGTCCCATCTCGGGCCCGCCTCGTTTCCAAGGAGCAGTCTGTGCC
TTCCACACCCCTTGCCCGAGTGTTGGGCTTCGGGGGCCTGGCCGCACGCC
TGGCCGTGAGCGGCATGTATGAAGCGGTCCGTCGGCAGATAGTGGCGGCG
CCTCCGACACAGTCAGGGTCATCAAGGCCCAGTTCACAGACTCTCTTATC
GGACACGAGTGCAGAACACATCGCTGAGACCTTGTGTAAGATGCGGGGCG
CAGCCTTGAAGCTGGGGCAGATGTTGAGCTTGCAAGACGAGGGGCTCCTC
CCCGAGCCGCTGGCCAAGGCCCTGGAGCGGGTACGACAGGGCGCAGACAT
AATGCCACGCGCTCAACTCCACTCGCAGCTAGTCACCGAGCTAGGGGTAG
ATTGGCGGGCGCGCTTCGCCGAGTTTGACGAGACACCCGTGGCGGCGGCT
TCCATCGGGCAGGTCCATAGGGGCCGAACGCTGGACGGGCGGGAGGTGGC
GGTTAAGGTACAGTATCCGGGCGTGGCGGACTCCATTGACAGCGATCTAA
GGAACCTTCAGCGGCTGGTCACGTATTTGAATGTGCTGCCCCCCGGCCTG
TACGTGGACGAGATCTTGGACGTGGCCCGGGAGGAGCTGACGCTGGAGTG
CGACTACCGACTGGAGGCCCAGAATCAGCAGCGCTTCCAGAGCTTGGTCA
GTGCCGATCCGGCCCTGGCACCGCATGTCTTGGTACCGGGGGTTGTGGAG
GAGCTCAGCAGCCGACTTGTGTTGACATCCGACTGGGTGGACGGGGAGCC
CATCGATCGCGTGGCCACCCAGGATCAGGCGACCCGAAATCGCGTGGCCC
GGCTGGTCCTCTTGCTGACGCTGCGCGAGCTGTTCGCCTGGCGGTTTATG
CAGACGGACCCAAATTGGTCCAATTTTTTGTACAATCAGGACACGGGCAA
GCTTTCCCTACTGGACTTTGGGGCCTCTCGCAATTACGACAAAAAGTTTG
TGGATAAGTACCTTGGGCTGGTGTGGTCCGCCGCCAACCAAGACACTACA
CGACTCATGGAGGTTAGCCGGCAGTTGGGTTTCTTGACCGGGGACGAGTC
GCCTCAAATGCTGCATGCCCACGAAAGAGCGGGGTTGGTGGTTGGGGAGC
CATTTGTGACCCGAGGTGCATTCGATTTCTACGGAAGTAATATGACGTTG
CGCATTTCCAAGCACGGAGAGACCTTCATGAAACACCGCCTCACGCCCCC
ACCTCGAGAGGCTTATTCCCTTCACCGAAAATTGGCAGGGGCTTTCTTGC
TTTGTATCAAGCTTAAAGCAGTCATGTTCTGCCGAGATTTATTGGAGGAA
GCGCATGGGATGTACGACTGGGAGGCACCGCAGGAGCAAGAAATGGTAGA
TGAGGAGGTAGCCAGCGGCACGGTGTATCGCGAGGGCGTGTGCAATCGGA
ATTAAAATGTCAGGGTAAGCTGTTAAGTGGAAAATTGGCTCGGTGGCAGC
TTGTAAATTTTTGTCAAAGGGTTTTTCCTCGATGTTCCATCCTGAGTGTG
AATTCAAAAGTCATGTCAGCAACATATTGCCTAAAGAAACGAGGACTGGG
GGAGTTATCTTCCCAAGCGTTCATTAGCTTCGGAGAAGAATGTACAAGAT
TCGAACAAATGAGTACATATTGAAGCACAACTCGAG

protein sequence of jgi.p|Nanoce1779_2|582620

>mRNA_3565-protein ID=mRNA_3565-protein|Name=jgi.p|Nanoce1779_2|582620|organism=Nannochloropsis oceanica|type=polypeptide|length=644bp
MWSKDAMRILQGATLVLENMARENATAPRSSITQLVNTAKDVAAAAREQQ
QKRQHHPPLLPSVSVGDAPAETTSLPPTQPKHTKAPSQPATCLPSAPPPP
ALLHDTPKRRPFPTFYKSSDPPGPSSAPLPPRQTEKDTVAFSPQSQPKFP
TQFDSVALPPSVPSRARLVSKEQSVPSTPLARVLGFGGLAARLAVSGMYE
AVRRQIVAAPPTQSGSSRPSSQTLLSDTSAEHIAETLCKMRGAALKLGQM
LSLQDEGLLPEPLAKALERVRQGADIMPRAQLHSQLVTELGVDWRARFAE
FDETPVAAASIGQVHRGRTLDGREVAVKVQYPGVADSIDSDLRNLQRLVT
YLNVLPPGLYVDEILDVAREELTLECDYRLEAQNQQRFQSLVSADPALAP
HVLVPGVVEELSSRLVLTSDWVDGEPIDRVATQDQATRNRVARLVLLLTL
RELFAWRFMQTDPNWSNFLYNQDTGKLSLLDFGASRNYDKKFVDKYLGLV
WSAANQDTTRLMEVSRQLGFLTGDESPQMLHAHERAGLVVGEPFVTRGAF
DFYGSNMTLRISKHGETFMKHRLTPPPREAYSLHRKLAGAFLLCIKLKAV
MFCRDLLEEAHGMYDWEAPQEQEMVDEEVASGTVYREGVCNRN*

mRNA from alignment at scaffold_6:670301..672732+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3565 ID=mRNA_3565|Name=jgi.p|Nanoce1779_2|582620|organism=Nannochloropsis oceanica|type=mRNA|length=2432bp|location=Sequence derived from alignment at scaffold_6:670301..672732+ (Nannochloropsis oceanica)
ACACCAGCCGCACAACCAAGCCGATGTGGTCCAAAGATGCCATGCGGATC
CTACAGGGAGCCACCCTTGTCCTCGAGAATATGGCGCGCGAGGTATGTCG
GAGATGGGTTTGTGAGCATGCCCACTCCCTTCCCCCCCCCCGTAGCCCCT
CGGAGTGTACGTGGCTAAACGTCCAAACATTATCCTTTTCTCGTTGGGTA
ATCGATCGTTTCCAAGTTGACCATCTCTGGGTATGGGGACGGCTGTACAT
GTTCTCTTATAGTCAATCGCTACAACGTTTAGGGCCGAGCTTTGTCTCAG
GTGTCTCTCTCTTTCTTTCCATACCCTTTTTTTTACAGAATGCCACTGCC
CCGCGCAGTTCCATCACACAGCTCGTCAATACGGCCAAAGATGTTGCGGC
GGCAGCCCGGGAACAGCAGCAAAAGCGCCAGCATCACCCACCATTGTTAC
CGTCCGTATCCGTGGGAGATGCTCCGGCCGAAACTACAAGTCTTCCGCCC
ACCCAGCCAAAACATACCAAGGCACCATCACAACCCGCAACGTGCTTGCC
ATCAGCTCCCCCACCACCTGCATTGCTCCACGACACGCCCAAACGTCGTC
CTTTCCCCACTTTTTACAAGTCGTCCGACCCGCCCGGCCCCTCATCGGCA
CCATTGCCACCTCGACAAACCGAAAAGGATACCGTTGCATTCTCGCCACA
GTCGCAGCCAAAATTTCCTACACAGTTCGACTCCGTTGCTCTTCCTCCCT
CCGTCCCATCTCGGGCCCGCCTCGTTTCCAAGGAGCAGTCTGTGCCTTCC
ACACCCCTTGCCCGAGTGTTGGGCTTCGGGGGCCTGGCCGCACGCCTGGC
CGTGAGCGGCATGTATGAAGCGGTCCGTCGGCAGATAGTGGCGGCGCCTC
CGACACAGTCAGGGTCATCAAGGCCCAGTTCACAGACTCTCTTATCGGAC
ACGAGTGCAGAACACATCGCTGAGACCTTGTGTAAGATGCGGGGCGCAGC
CTTGAAGCTGGGGCAGATGTTGAGCTTGCAAGACGAGGGGCTCCTCCCCG
AGCCGCTGGCCAAGGCCCTGGAGCGGGTACGACAGGGCGCAGACATAATG
CCACGCGCTCAACTCCACTCGCAGCTAGTCACCGAGCTAGGGGTAGATTG
GCGGGCGCGCTTCGCCGAGTTTGACGAGACACCCGTGGCGGCGGCTTCCA
TCGGGCAGGTCCATAGGGGCCGAACGCTGGACGGGCGGGAGGTGGCGGTT
AAGGTACAGTATCCGGGCGTGGCGGACTCCATTGACAGCGATCTAAGGAA
CCTTCAGCGGCTGGTCACGTATTTGAATGTGCTGCCCCCCGGCCTGTACG
TGGACGAGATCTTGGACGTGGCCCGGGAGGAGCTGACGCTGGAGTGCGAC
TACCGACTGGAGGCCCAGAATCAGCAGCGCTTCCAGAGCTTGGTCAGTGC
CGATCCGGCCCTGGCACCGCATGTCTTGGTACCGGGGGTTGTGGAGGAGC
TCAGCAGCCGACTTGTGTTGACATCCGACTGGGTGGACGGGGAGCCCATC
GATCGCGTGGCCACCCAGGATCAGGCGACCCGAAATCGCGTGGCCCGGCT
GGTCCTCTTGCTGACGCTGCGCGAGCTGTTCGCCTGGCGGTTTATGCAGA
CGGACCCAAATTGGTCCAATTTTTTGTACAATCAGGACACGGGCAAGCTT
TCCCTACTGGACTTTGGGGCCTCTCGCAATTACGACAAAAAGTTTGTGGA
TAAGTACCTTGGGCTGGTGTGGTCCGCCGCCAACCAAGACACTACACGAC
TCATGGAGGTTAGCCGGCAGTTGGGTTTCTTGACCGGGGACGAGTCGCCT
CAAATGCTGCATGCCCACGAAAGAGCGGGGTTGGTGGTTGGGGAGCCATT
TGTGACCCGAGGTGCATTCGATTTCTACGGAAGTAATATGACGTTGCGCA
TTTCCAAGCACGGAGAGACCTTCATGAAACACCGCCTCACGCCCCCACCT
CGAGAGGCTTATTCCCTTCACCGAAAATTGGCAGGGGCTTTCTTGCTTTG
TATCAAGCTTAAAGCAGTCATGTTCTGCCGAGATTTATTGGAGGAAGCGC
ATGGGATGTACGACTGGGAGGCACCGCAGGAGCAAGAAATGGTAGATGAG
GAGGTAGCCAGCGGCACGGTGTATCGCGAGGGCGTGTGCAATCGGAATTA
AAATGTCAGGGTAAGCTGTTAAGTGGAAAATTGGCTCGGTGGCAGCTTGT
AAATTTTTGTCAAAGGGTTTTTCCTCGATGTTCCATCCTGAGTGTGAATT
CAAAAGTCATGTCAGCAACATATTGCCTAAAGAAACGAGGACTGGGGGAG
TTATCTTCCCAAGCGTTCATTAGCTTCGGAGAAGAATGTACAAGATTCGA
ACAAATGAGTACATATTGAAGCACAACTCGAG

Coding sequence (CDS) from alignment at scaffold_6:670301..672732+

>mRNA_3565 ID=mRNA_3565|Name=jgi.p|Nanoce1779_2|582620|organism=Nannochloropsis oceanica|type=CDS|length=3864bp|location=Sequence derived from alignment at scaffold_6:670301..672732+ (Nannochloropsis oceanica)
ATGTGGTCCAAAGATGCCATGCGGATCCTACAGGGAGCCACCCTTGTCCT
CGAGAATATGGCGCGCGAGAATGCCACTGCCCCGCGCAGTTCCATCACAC
AGCTCGTCAATACGGCCAAAGATGTTGCGGCGGCAGCCCGGGAACAGCAG
CAAAAGCGCCAGCATCACCCACCATTGTTACCGTCCGTATCCGTGGGAGA
TGCTCCGGCCGAAACTACAAGTCTTCCGCCCACCCAGCCAAAACATACCA
AGGCACCATCACAACCCGCAACGTGCTTGCCATCAGCTCCCCCACCACCT
GCATTGCTCCACGACACGCCCAAACGTCGTCCTTTCCCCACTTTTTACAA
GTCGTCCGACCCGCCCGGCCCCTCATCGGCACCATTGCCACCTCGACAAA
CCGAAAAGGATACCGTTGCATTCTCGCCACAGTCGCAGCCAAAATTTCCT
ACACAGTTCGACTCCGTTGCTCTTCCTCCCTCCGTCCCATCTCGGGCCCG
CCTCGTTTCCAAGGAGCAGTCTGTGCCTTCCACACCCCTTGCCCGAGTGT
TGGGCTTCGGGGGCCTGGCCGCACGCCTGGCCGTGAGCGGCATGTATGAA
GCGGTCCGTCGGCAGATAGTGGCGGCGCCTCCGACACAGTCAGGGTCATC
AAGGCCCAGTTCACAGACTCTCTTATCGGACACGAGTGCAGAACACATCG
CTGAGACCTTGTGTAAGATGCGGGGCGCAGCCTTGAAGCTGGGGCAGATG
TTGAGCTTGCAAGACGAGGGGCTCCTCCCCGAGCCGCTGGCCAAGGCCCT
GGAGCGGGTACGACAGGGCGCAGACATAATGCCACGCGCTCAACTCCACT
CGCAGCTAGTCACCGAGCTAGGGGTAGATTGGCGGGCGCGCTTCGCCGAG
TTTGACGAGACACCCGTGGCGGCGGCTTCCATCGGGCAGGTCCATAGGGG
CCGAACGCTGGACGGGCGGGAGGTGGCGGTTAAGGTACAGTATCCGGGCG
TGGCGGACTCCATTGACAGCGATCTAAGGAACCTTCAGCGGCTGGTCACG
TATTTGAATGTGCTGCCCCCCGGCCTGTACGTGGACGAGATCTTGGACGT
GGCCCGGGAGGAGCTGACGCTGGAGTGCGACTACCGACTGGAGGCCCAGA
ATCAGCAGCGCTTCCAGAGCTTGGTCAGTGCCGATCCGGCCCTGGCACCG
CATGTCTTGGTACCGGGGGTTGTGGAGGAGCTCAGCAGCCGACTTGTGTT
GACATCCGACTGGGTGGACGGGGAGCCCATCGATCGCGTGGCCACCCAGG
ATCAGGCGACCCGAAATCGCGTGGCCCGGCTGGTCCTCTTGCTGACGCTG
CGCGAGCTGTTCGCCTGGCGGTTTATGCAGACGGACCCAAATTGGTCCAA
TTTTTTGTACAATCAGGACACGGGCAAGCTTTCCCTACTGGACTTTGGGG
CCTCTCGCAATTACGACAAAAAGTTTGTGGATAAGTACCTTGGGCTGGTG
TGGTCCGCCGCCAACCAAGACACTACACGACTCATGGAGGTTAGCCGGCA
GTTGGGTTTCTTGACCGGGGACGAGTCGCCTCAAATGCTGCATGCCCACG
AAAGAGCGGGGTTGGTGGTTGGGGAGCCATTTGTGACCCGAGGTGCATTC
GATTTCTACGGAAGTAATATGACGTTGCGCATTTCCAAGCACGGAGAGAC
CTTCATGAAACACCGCCTCACGCCCCCACCTCGAGAGGCTTATTCCCTTC
ACCGAAAATTGGCAGGGGCTTTCTTGCTTTGTATCAAGCTTAAAGCAGTC
ATGTTCTGCCGAGATTTATTGGAGGAAGCGCATGGGATGTACGACTGGGA
GGCACCGCAGGAGCAAGAAATGGTAGATGAGGAGGTAGCCAGCGGCACGG
TGTATCGCGAGGGCGTGTGCAATCGGAATTAAATGTGGTCCAAAGATGCC
ATGCGGATCCTACAGGGAGCCACCCTTGTCCTCGAGAATATGGCGCGCGA
GAATGCCACTGCCCCGCGCAGTTCCATCACACAGCTCGTCAATACGGCCA
AAGATGTTGCGGCGGCAGCCCGGGAACAGCAGCAAAAGCGCCAGCATCAC
CCACCATTGTTACCGTCCGTATCCGTGGGAGATGCTCCGGCCGAAACTAC
AAGTCTTCCGCCCACCCAGCCAAAACATACCAAGGCACCATCACAACCCG
CAACGTGCTTGCCATCAGCTCCCCCACCACCTGCATTGCTCCACGACACG
CCCAAACGTCGTCCTTTCCCCACTTTTTACAAGTCGTCCGACCCGCCCGG
CCCCTCATCGGCACCATTGCCACCTCGACAAACCGAAAAGGATACCGTTG
CATTCTCGCCACAGTCGCAGCCAAAATTTCCTACACAGTTCGACTCCGTT
GCTCTTCCTCCCTCCGTCCCATCTCGGGCCCGCCTCGTTTCCAAGGAGCA
GTCTGTGCCTTCCACACCCCTTGCCCGAGTGTTGGGCTTCGGGGGCCTGG
CCGCACGCCTGGCCGTGAGCGGCATGTATGAAGCGGTCCGTCGGCAGATA
GTGGCGGCGCCTCCGACACAGTCAGGGTCATCAAGGCCCAGTTCACAGAC
TCTCTTATCGGACACGAGTGCAGAACACATCGCTGAGACCTTGTGTAAGA
TGCGGGGCGCAGCCTTGAAGCTGGGGCAGATGTTGAGCTTGCAAGACGAG
GGGCTCCTCCCCGAGCCGCTGGCCAAGGCCCTGGAGCGGGTACGACAGGG
CGCAGACATAATGCCACGCGCTCAACTCCACTCGCAGCTAGTCACCGAGC
TAGGGGTAGATTGGCGGGCGCGCTTCGCCGAGTTTGACGAGACACCCGTG
GCGGCGGCTTCCATCGGGCAGGTCCATAGGGGCCGAACGCTGGACGGGCG
GGAGGTGGCGGTTAAGGTACAGTATCCGGGCGTGGCGGACTCCATTGACA
GCGATCTAAGGAACCTTCAGCGGCTGGTCACGTATTTGAATGTGCTGCCC
CCCGGCCTGTACGTGGACGAGATCTTGGACGTGGCCCGGGAGGAGCTGAC
GCTGGAGTGCGACTACCGACTGGAGGCCCAGAATCAGCAGCGCTTCCAGA
GCTTGGTCAGTGCCGATCCGGCCCTGGCACCGCATGTCTTGGTACCGGGG
GTTGTGGAGGAGCTCAGCAGCCGACTTGTGTTGACATCCGACTGGGTGGA
CGGGGAGCCCATCGATCGCGTGGCCACCCAGGATCAGGCGACCCGAAATC
GCGTGGCCCGGCTGGTCCTCTTGCTGACGCTGCGCGAGCTGTTCGCCTGG
CGGTTTATGCAGACGGACCCAAATTGGTCCAATTTTTTGTACAATCAGGA
CACGGGCAAGCTTTCCCTACTGGACTTTGGGGCCTCTCGCAATTACGACA
AAAAGTTTGTGGATAAGTACCTTGGGCTGGTGTGGTCCGCCGCCAACCAA
GACACTACACGACTCATGGAGGTTAGCCGGCAGTTGGGTTTCTTGACCGG
GGACGAGTCGCCTCAAATGCTGCATGCCCACGAAAGAGCGGGGTTGGTGG
TTGGGGAGCCATTTGTGACCCGAGGTGCATTCGATTTCTACGGAAGTAAT
ATGACGTTGCGCATTTCCAAGCACGGAGAGACCTTCATGAAACACCGCCT
CACGCCCCCACCTCGAGAGGCTTATTCCCTTCACCGAAAATTGGCAGGGG
CTTTCTTGCTTTGTATCAAGCTTAAAGCAGTCATGTTCTGCCGAGATTTA
TTGGAGGAAGCGCATGGGATGTACGACTGGGAGGCACCGCAGGAGCAAGA
AATGGTAGATGAGGAGGTAGCCAGCGGCACGGTGTATCGCGAGGGCGTGT
GCAATCGGAATTAA

Synonyms

Publications