jgi.p|Nanoce1779_2|582617, mRNA_3564 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582617
Unique Name	mRNA_3564
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2832
Alignment location	scaffold_6:667327..670158 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582703
Track	FilteredModels2
ProteinId	582617

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:667327..670158 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582617	gene_3564	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582617	mRNA_3564-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3564	CDS_3564	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:667327..670158-
coding sequence from alignment at scaffold_6:667327..670158-

mRNA sequence

>mRNA_3564 ID=mRNA_3564|Name=jgi.p|Nanoce1779_2|582617|organism=Nannochloropsis oceanica|type=mRNA|length=2832bp
CAGGTACAACGCTACCAGCGGCAGGAATGCGATAGGACCGTGAGGAAAAT
CACTCAGCCCCAGCCACATCGACCCTTAGCCCGGCCCCGACCCCCACCCC
GGCCCGACCCCCACCCCGGCCACTCTGCAGCTGTACTGGCTGTTATTGCT
TGCTCCTCAACATGATAATAAGACAAGACGCACAGCGAGAGTTGCAGCGG
ATGCCACCTAGAGACAGGAGGAGAAGAGGACGTAGACGGAGCCTCACCCT
CCTGACATCCGCACGTATAGTACTCGCTTTGTCCGCCTTCCTTCACACGA
CCTCCGCATTTCTCTCCACCCTGCCTTCGCGCGTCGGCAGCAGAGGTACC
GACGACGGCGCCAAACCCCTTTGGCGGGCCGCTGCCATCGCCACATCCTC
CACTTCGTTGTCCTTTTCCAGTGCCGGCGAACGGAGACGGAAGAGCAACA
CCTCTACGTCGTCCTCTGCGAGTGGCCATTCCCCCATCCCCCCTTCTGTA
GGAAAGGCTCAACAGTCGAGAGCAGAACGTGGAAGGCAATTGAACAATGA
ATTGGCACGAATAAAGGTAGCTGGCCCGGTAGTAGACAACGAGCTGTACC
TAAAAGCCTTGCGGTCATGCGCCAAATTGGGTAACGTGAAAATGGCGATG
ACTCTACTGCGGCAGATGCAGCAGCAGTCTCCGCCACCGCGGGTAGCCTA
CAACCTCGTGCTGGAGGCGGCAGCCAGGGCCCAGGACCGAAATGTGGCGG
TTTGTGTGTACACAGAGATGCTATGGGGTCGGGACGGGGACGGGGCCGAG
GCTATCGGGGTGAACGTGTTCACATATGGCCAGATGCTTTCCCTGTACGC
GAACCTGGCGGACGGGCCGGCCGCACTGGCCCTCCTGAAGGAAATGGCGG
CACAAGGCGTGGCGGGCAACGCCTTCACCTACACCTCTGCTATCGATGCC
TGCGAGCGGTCGGGGCTGGTGGGTGAGACGGAGCGCTTGTTTCGGGAGAT
GAAGGAGCACGGCGTGGCACCCACCGTGGTTACATACAACACCATCATCG
CTCGGCGCGCCGAGCAGGCCGACACCTGGACCGAGGCACTAGACTGGCTG
GCAAAACTGGAGGCCTCAGGCATCGAGCCCCTGCGTTCATCGTACGCGGC
CGCGCTCAACGCCTGTGAGCGCGCCGAGGAGTGGGAGCTGGTGGTGGAGC
TAACGGAGCGCGCGGGCTCCTTGGCCGACACCACAATGTGGTCGCGCAAT
CTGGCAGCGCTGATCAAGCTGATGCGGCACGAGGAGGCGCTGGCCATATT
CCGTCGCCTGCGCGAAGAGCAGACCGTGCCCATGGACGAAGTTCTGTACA
CGCTGGCGCTGAAGGCCTGCGCGCTGGCTCGGCGGCCTTACGGCGAAGCA
CGGGCGCTGCTGGAGGAAATGCGCGCGGCCGGGCTGGCGCCCAACGTGGT
GACATTCTCGGCAGCCATGGAGGCCTGCAATGGCGACAGGGATTCGGAGG
GCATGCCCAACTGGGAGATGGCTTTAGAGTTGCTGCGTGAAATGCAGGCG
CAGGGCGTGCGGCCCAACACTGTCACCTACTCCACACTCATGGACGTGCT
GACCGAAGCCGGCCAGTGGCAACGTGCGCTGCATTTGTTTATGACACTGG
AGAAGGACGGGGAGCAGGCGGGCGCCACCAAGTCCGTCTGGCTCTATACG
GCCGCTATCCGTGCCTGTGCTCAAGGTCGGCAGCTGGAAACCGCGCTAGC
CCTGCTGCGCGAGGTGACGGCGGACCCGGCCCGGCACGGCGTGCCTAATC
TTTGCCTATATACGGCCGCATTGGACGCCTGCGAGAAGATGGGCAATGGT
TCGCTGGCGCTGCAGCTGCTTGATGAGATGGCCCGCGAGCACAGTATCGT
GGTCGACGACGTGGCCTGTGGCGTGGTTATCAGCGCTTGCCGCAAGGCGG
GGCTGGTGGGTGACTGCTTACGCCTGCTGGCTTTCATGCTGAACCACAGG
CTAGCCCCAAACCTGGGCGTCTATAACACTGTCATAGGTGCTCTCTGCTC
CCAGCCTAAGTATGTGGACAAAGCCATCGAGGTTCTCTCATTCCTGGTCG
CCTCACAACGCCCCGGAAACGCCAACATCAGCGGCAGCAGCAGGTCGGCG
CGCGCCCCGCGTCCCAACACACAGAGCTACAGCCAGGTAGTGGACGCGCT
GGCCGACGCCTTGCGCTGGGACGAGGCGCTGCGGCTGCTACAGGAGATGC
GGGATGCGGGCCACCGGCCCGAGGTCTTGACGTGCGCCAAGGTGGTGGCG
GCCTGCGAGAAGAAGCAGCGCTGGAAGGAGGCGCTGCAGCTGCTGGACGA
CATGCGCAAGGACGAGTATTCTTTCTATGAACTCGAGCTGCTGGACCAGG
TCTTCAAAAAGCTTGTGGGTGTGGCCGCGGCAGGCCTTCGGTCCATTTCA
CGAGGTGGGGGAGCGACAGAAGGCGGGACCGTGGAAAGCACCGCGGCAGG
AACGGGCGTGGGACGACAAGGCCATGAATTGAAGGAAGTCGAGGAAATCG
ACGAGTTAGAAATGCCGCCGTCATCATCTCTGCTAGTGGGAAAGGAGATT
GAGACCAAGGCAAAAGCAAGCGTCCACGTTGCGAGTGAAAGCAGTGACAG
ATGAAGATGCACAGCTGGACACACTGTACTTATCAAATAACAACATTATC
ACCATTACTATGATCATGATCATCAAGAACAACAACAAAAAAAAATAATT
AAATGTTGAGGATGTCGGTATTCCATATTTTCATGCTCTACACGGTCTTC
TATTTTCTTCAAATAGCGGCTACACATCTCTT

protein sequence of jgi.p|Nanoce1779_2|582617

>mRNA_3564-protein ID=mRNA_3564-protein|Name=jgi.p|Nanoce1779_2|582617|organism=Nannochloropsis oceanica|type=polypeptide|length=831bp
MIIRQDAQRELQRMPPRDRRRRGRRRSLTLLTSARIVLALSAFLHTTSAF
LSTLPSRVGSRGTDDGAKPLWRAAAIATSSTSLSFSSAGERRRKSNTSTS
SSASGHSPIPPSVGKAQQSRAERGRQLNNELARIKVAGPVVDNELYLKAL
RSCAKLGNVKMAMTLLRQMQQQSPPPRVAYNLVLEAAARAQDRNVAVCVY
TEMLWGRDGDGAEAIGVNVFTYGQMLSLYANLADGPAALALLKEMAAQGV
AGNAFTYTSAIDACERSGLVGETERLFREMKEHGVAPTVVTYNTIIARRA
EQADTWTEALDWLAKLEASGIEPLRSSYAAALNACERAEEWELVVELTER
AGSLADTTMWSRNLAALIKLMRHEEALAIFRRLREEQTVPMDEVLYTLAL
KACALARRPYGEARALLEEMRAAGLAPNVVTFSAAMEACNGDRDSEGMPN
WEMALELLREMQAQGVRPNTVTYSTLMDVLTEAGQWQRALHLFMTLEKDG
EQAGATKSVWLYTAAIRACAQGRQLETALALLREVTADPARHGVPNLCLY
TAALDACEKMGNGSLALQLLDEMAREHSIVVDDVACGVVISACRKAGLVG
DCLRLLAFMLNHRLAPNLGVYNTVIGALCSQPKYVDKAIEVLSFLVASQR
PGNANISGSSRSARAPRPNTQSYSQVVDALADALRWDEALRLLQEMRDAG
HRPEVLTCAKVVAACEKKQRWKEALQLLDDMRKDEYSFYELELLDQVFKK
LVGVAAAGLRSISRGGGATEGGTVESTAAGTGVGRQGHELKEVEEIDELE
MPPSSSLLVGKEIETKAKASVHVASESSDR*

mRNA from alignment at scaffold_6:667327..670158-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3564 ID=mRNA_3564|Name=jgi.p|Nanoce1779_2|582617|organism=Nannochloropsis oceanica|type=mRNA|length=2832bp|location=Sequence derived from alignment at scaffold_6:667327..670158- (Nannochloropsis oceanica)
CAGGTACAACGCTACCAGCGGCAGGAATGCGATAGGACCGTGAGGAAAAT
CACTCAGCCCCAGCCACATCGACCCTTAGCCCGGCCCCGACCCCCACCCC
GGCCCGACCCCCACCCCGGCCACTCTGCAGCTGTACTGGCTGTTATTGCT
TGCTCCTCAACATGATAATAAGACAAGACGCACAGCGAGAGTTGCAGCGG
ATGCCACCTAGAGACAGGAGGAGAAGAGGACGTAGACGGAGCCTCACCCT
CCTGACATCCGCACGTATAGTACTCGCTTTGTCCGCCTTCCTTCACACGA
CCTCCGCATTTCTCTCCACCCTGCCTTCGCGCGTCGGCAGCAGAGGTACC
GACGACGGCGCCAAACCCCTTTGGCGGGCCGCTGCCATCGCCACATCCTC
CACTTCGTTGTCCTTTTCCAGTGCCGGCGAACGGAGACGGAAGAGCAACA
CCTCTACGTCGTCCTCTGCGAGTGGCCATTCCCCCATCCCCCCTTCTGTA
GGAAAGGCTCAACAGTCGAGAGCAGAACGTGGAAGGCAATTGAACAATGA
ATTGGCACGAATAAAGGTAGCTGGCCCGGTAGTAGACAACGAGCTGTACC
TAAAAGCCTTGCGGTCATGCGCCAAATTGGGTAACGTGAAAATGGCGATG
ACTCTACTGCGGCAGATGCAGCAGCAGTCTCCGCCACCGCGGGTAGCCTA
CAACCTCGTGCTGGAGGCGGCAGCCAGGGCCCAGGACCGAAATGTGGCGG
TTTGTGTGTACACAGAGATGCTATGGGGTCGGGACGGGGACGGGGCCGAG
GCTATCGGGGTGAACGTGTTCACATATGGCCAGATGCTTTCCCTGTACGC
GAACCTGGCGGACGGGCCGGCCGCACTGGCCCTCCTGAAGGAAATGGCGG
CACAAGGCGTGGCGGGCAACGCCTTCACCTACACCTCTGCTATCGATGCC
TGCGAGCGGTCGGGGCTGGTGGGTGAGACGGAGCGCTTGTTTCGGGAGAT
GAAGGAGCACGGCGTGGCACCCACCGTGGTTACATACAACACCATCATCG
CTCGGCGCGCCGAGCAGGCCGACACCTGGACCGAGGCACTAGACTGGCTG
GCAAAACTGGAGGCCTCAGGCATCGAGCCCCTGCGTTCATCGTACGCGGC
CGCGCTCAACGCCTGTGAGCGCGCCGAGGAGTGGGAGCTGGTGGTGGAGC
TAACGGAGCGCGCGGGCTCCTTGGCCGACACCACAATGTGGTCGCGCAAT
CTGGCAGCGCTGATCAAGCTGATGCGGCACGAGGAGGCGCTGGCCATATT
CCGTCGCCTGCGCGAAGAGCAGACCGTGCCCATGGACGAAGTTCTGTACA
CGCTGGCGCTGAAGGCCTGCGCGCTGGCTCGGCGGCCTTACGGCGAAGCA
CGGGCGCTGCTGGAGGAAATGCGCGCGGCCGGGCTGGCGCCCAACGTGGT
GACATTCTCGGCAGCCATGGAGGCCTGCAATGGCGACAGGGATTCGGAGG
GCATGCCCAACTGGGAGATGGCTTTAGAGTTGCTGCGTGAAATGCAGGCG
CAGGGCGTGCGGCCCAACACTGTCACCTACTCCACACTCATGGACGTGCT
GACCGAAGCCGGCCAGTGGCAACGTGCGCTGCATTTGTTTATGACACTGG
AGAAGGACGGGGAGCAGGCGGGCGCCACCAAGTCCGTCTGGCTCTATACG
GCCGCTATCCGTGCCTGTGCTCAAGGTCGGCAGCTGGAAACCGCGCTAGC
CCTGCTGCGCGAGGTGACGGCGGACCCGGCCCGGCACGGCGTGCCTAATC
TTTGCCTATATACGGCCGCATTGGACGCCTGCGAGAAGATGGGCAATGGT
TCGCTGGCGCTGCAGCTGCTTGATGAGATGGCCCGCGAGCACAGTATCGT
GGTCGACGACGTGGCCTGTGGCGTGGTTATCAGCGCTTGCCGCAAGGCGG
GGCTGGTGGGTGACTGCTTACGCCTGCTGGCTTTCATGCTGAACCACAGG
CTAGCCCCAAACCTGGGCGTCTATAACACTGTCATAGGTGCTCTCTGCTC
CCAGCCTAAGTATGTGGACAAAGCCATCGAGGTTCTCTCATTCCTGGTCG
CCTCACAACGCCCCGGAAACGCCAACATCAGCGGCAGCAGCAGGTCGGCG
CGCGCCCCGCGTCCCAACACACAGAGCTACAGCCAGGTAGTGGACGCGCT
GGCCGACGCCTTGCGCTGGGACGAGGCGCTGCGGCTGCTACAGGAGATGC
GGGATGCGGGCCACCGGCCCGAGGTCTTGACGTGCGCCAAGGTGGTGGCG
GCCTGCGAGAAGAAGCAGCGCTGGAAGGAGGCGCTGCAGCTGCTGGACGA
CATGCGCAAGGACGAGTATTCTTTCTATGAACTCGAGCTGCTGGACCAGG
TCTTCAAAAAGCTTGTGGGTGTGGCCGCGGCAGGCCTTCGGTCCATTTCA
CGAGGTGGGGGAGCGACAGAAGGCGGGACCGTGGAAAGCACCGCGGCAGG
AACGGGCGTGGGACGACAAGGCCATGAATTGAAGGAAGTCGAGGAAATCG
ACGAGTTAGAAATGCCGCCGTCATCATCTCTGCTAGTGGGAAAGGAGATT
GAGACCAAGGCAAAAGCAAGCGTCCACGTTGCGAGTGAAAGCAGTGACAG
ATGAAGATGCACAGCTGGACACACTGTACTTATCAAATAACAACATTATC
ACCATTACTATGATCATGATCATCAAGAACAACAACAAAAAAAAATAATT
AAATGTTGAGGATGTCGGTATTCCATATTTTCATGCTCTACACGGTCTTC
TATTTTCTTCAAATAGCGGCTACACATCTCTT

Coding sequence (CDS) from alignment at scaffold_6:667327..670158-

>mRNA_3564 ID=mRNA_3564|Name=jgi.p|Nanoce1779_2|582617|organism=Nannochloropsis oceanica|type=CDS|length=2493bp|location=Sequence derived from alignment at scaffold_6:667327..670158- (Nannochloropsis oceanica)
ATGATAATAAGACAAGACGCACAGCGAGAGTTGCAGCGGATGCCACCTAG
AGACAGGAGGAGAAGAGGACGTAGACGGAGCCTCACCCTCCTGACATCCG
CACGTATAGTACTCGCTTTGTCCGCCTTCCTTCACACGACCTCCGCATTT
CTCTCCACCCTGCCTTCGCGCGTCGGCAGCAGAGGTACCGACGACGGCGC
CAAACCCCTTTGGCGGGCCGCTGCCATCGCCACATCCTCCACTTCGTTGT
CCTTTTCCAGTGCCGGCGAACGGAGACGGAAGAGCAACACCTCTACGTCG
TCCTCTGCGAGTGGCCATTCCCCCATCCCCCCTTCTGTAGGAAAGGCTCA
ACAGTCGAGAGCAGAACGTGGAAGGCAATTGAACAATGAATTGGCACGAA
TAAAGGTAGCTGGCCCGGTAGTAGACAACGAGCTGTACCTAAAAGCCTTG
CGGTCATGCGCCAAATTGGGTAACGTGAAAATGGCGATGACTCTACTGCG
GCAGATGCAGCAGCAGTCTCCGCCACCGCGGGTAGCCTACAACCTCGTGC
TGGAGGCGGCAGCCAGGGCCCAGGACCGAAATGTGGCGGTTTGTGTGTAC
ACAGAGATGCTATGGGGTCGGGACGGGGACGGGGCCGAGGCTATCGGGGT
GAACGTGTTCACATATGGCCAGATGCTTTCCCTGTACGCGAACCTGGCGG
ACGGGCCGGCCGCACTGGCCCTCCTGAAGGAAATGGCGGCACAAGGCGTG
GCGGGCAACGCCTTCACCTACACCTCTGCTATCGATGCCTGCGAGCGGTC
GGGGCTGGTGGGTGAGACGGAGCGCTTGTTTCGGGAGATGAAGGAGCACG
GCGTGGCACCCACCGTGGTTACATACAACACCATCATCGCTCGGCGCGCC
GAGCAGGCCGACACCTGGACCGAGGCACTAGACTGGCTGGCAAAACTGGA
GGCCTCAGGCATCGAGCCCCTGCGTTCATCGTACGCGGCCGCGCTCAACG
CCTGTGAGCGCGCCGAGGAGTGGGAGCTGGTGGTGGAGCTAACGGAGCGC
GCGGGCTCCTTGGCCGACACCACAATGTGGTCGCGCAATCTGGCAGCGCT
GATCAAGCTGATGCGGCACGAGGAGGCGCTGGCCATATTCCGTCGCCTGC
GCGAAGAGCAGACCGTGCCCATGGACGAAGTTCTGTACACGCTGGCGCTG
AAGGCCTGCGCGCTGGCTCGGCGGCCTTACGGCGAAGCACGGGCGCTGCT
GGAGGAAATGCGCGCGGCCGGGCTGGCGCCCAACGTGGTGACATTCTCGG
CAGCCATGGAGGCCTGCAATGGCGACAGGGATTCGGAGGGCATGCCCAAC
TGGGAGATGGCTTTAGAGTTGCTGCGTGAAATGCAGGCGCAGGGCGTGCG
GCCCAACACTGTCACCTACTCCACACTCATGGACGTGCTGACCGAAGCCG
GCCAGTGGCAACGTGCGCTGCATTTGTTTATGACACTGGAGAAGGACGGG
GAGCAGGCGGGCGCCACCAAGTCCGTCTGGCTCTATACGGCCGCTATCCG
TGCCTGTGCTCAAGGTCGGCAGCTGGAAACCGCGCTAGCCCTGCTGCGCG
AGGTGACGGCGGACCCGGCCCGGCACGGCGTGCCTAATCTTTGCCTATAT
ACGGCCGCATTGGACGCCTGCGAGAAGATGGGCAATGGTTCGCTGGCGCT
GCAGCTGCTTGATGAGATGGCCCGCGAGCACAGTATCGTGGTCGACGACG
TGGCCTGTGGCGTGGTTATCAGCGCTTGCCGCAAGGCGGGGCTGGTGGGT
GACTGCTTACGCCTGCTGGCTTTCATGCTGAACCACAGGCTAGCCCCAAA
CCTGGGCGTCTATAACACTGTCATAGGTGCTCTCTGCTCCCAGCCTAAGT
ATGTGGACAAAGCCATCGAGGTTCTCTCATTCCTGGTCGCCTCACAACGC
CCCGGAAACGCCAACATCAGCGGCAGCAGCAGGTCGGCGCGCGCCCCGCG
TCCCAACACACAGAGCTACAGCCAGGTAGTGGACGCGCTGGCCGACGCCT
TGCGCTGGGACGAGGCGCTGCGGCTGCTACAGGAGATGCGGGATGCGGGC
CACCGGCCCGAGGTCTTGACGTGCGCCAAGGTGGTGGCGGCCTGCGAGAA
GAAGCAGCGCTGGAAGGAGGCGCTGCAGCTGCTGGACGACATGCGCAAGG
ACGAGTATTCTTTCTATGAACTCGAGCTGCTGGACCAGGTCTTCAAAAAG
CTTGTGGGTGTGGCCGCGGCAGGCCTTCGGTCCATTTCACGAGGTGGGGG
AGCGACAGAAGGCGGGACCGTGGAAAGCACCGCGGCAGGAACGGGCGTGG
GACGACAAGGCCATGAATTGAAGGAAGTCGAGGAAATCGACGAGTTAGAA
ATGCCGCCGTCATCATCTCTGCTAGTGGGAAAGGAGATTGAGACCAAGGC
AAAAGCAAGCGTCCACGTTGCGAGTGAAAGCAGTGACAGATGA

Synonyms

Publications