jgi.p|Nanoce1779_2|582604, mRNA_3561 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582604
Unique Name	mRNA_3561
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1847
Alignment location	scaffold_6:656838..658684 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582690
Track	FilteredModels2
ProteinId	582604

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:656838..658684 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582604	gene_3561	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582604	mRNA_3561-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3561	CDS_3561	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:656838..658684+
coding sequence from alignment at scaffold_6:656838..658684+

mRNA sequence

>mRNA_3561 ID=mRNA_3561|Name=jgi.p|Nanoce1779_2|582604|organism=Nannochloropsis oceanica|type=mRNA|length=1847bp
ACAGAAGCTCGTGTCCTGCGTTCAGAAGCCATCCGAAAAGGCGGGGAGCA
TCATTATCGAGATCCCGCAGACAGCACACCTTTGCTTTGCCTGCTCAGCA
GGCTTCCGTCACAGTGAAGCGCAGTTTCCCCAGCTATATCACCACCTTGT
CGTCGCGAGTCTTAATAACGAATCCAGCGCGGAGCCATTTTCAATTGGTG
CAGTGCAAGGATAGCCATAGCAGGCTCCTCTCTCTCTACCTCGCTATTCT
TACCGGGCCCTTCTCGCAGGATGAATACCTACGTCAACTTTGTTCGAAAC
CACGCACTGCTCGTCCGCCCAGTCGAGGGTCTGCTGCGCACTGTGACATT
CTTCCTACCGTCCCGCTTCCACGAAAATGGGAATGGGGAGATCACCACCG
AGGCAGCTTTGGCCGCCAGCAATGTCCTCACCTTGGTGAATGATCTAATA
CTGCTTAGGCCAGTTAGAAATACGGCAGCACTCCTGCCCCACCCAGAAGA
CCGCATTGGGTTGGTCCTTATGCTCATCAGTCACACGGAAGTGCTGTTGG
AGAAGGTTTCAATGCGGCTTGGGAACGGCGCCGAGCATTCGGTGGTTTTG
TCCCTGGAAGCCCTAAAAGCCATCTTACGCCTCAAGCTTCTCCACCTCCA
ACATCAAGAAGGAAACACGGAGACCAAGCTGATTCTGGACGGTGGGCGTG
TCATCACATCATTTGACAACCCCATGTCGCCCCTCCCTCTGACCACGACG
ACGATGTCGGCAGCCGGCCCGTCATTGGGACCAGCCTCCGAGTCCCCAGC
GGTGGATGCCGACGAGGACCAGGAGGAAGAGGAGATGCTGTTGCGTGTCG
TACGGAGAAAAGGAGGAAGTTTGGAATGTAAACGAAGAGAGGACAGTACC
CCTCGGCATGAATGGAGGCGGGGCAGACGGACAGGGCGCAAGTTTTTGTA
CTATGCAGGTGGTGAGAGAAACCAGGTTGTTGAAGAAGGTAAGAATGGAT
CCCATGAGGACGATCACGACAAGGCCAACATCGACTCCTCTTCCTCCCCG
ACTTCCTCGTCATCCTCCTCGTCCGCGTCATCGTCAACGTCGCCAGCGCC
TAGCCAGGTAGCACCTATTACGGCTGTGGCCGACAACGTTATTTGCCCGG
GTCTGGTGCGATCAATGGAAGAGGAGGAGGCTGTGGTTGCCAAGGCGCGC
ACCCGTCTATTACTTACAGGCGAGGTGCTGCACATCTTGCGCCCTCTTCT
ATTTGCCTACCTGCGCTGGTTGTTGGCCCGTCGACGCTTCTATATCCAAC
GTCCTGTCGCCATCGCAGCTTCTGTCGGTAGTGGCCGTAAGCGAACCATA
CCAGAGCTGCTCTCCTCCTTACCGTCGGCAGCTCCTGAGTGGCTGCCCCT
ACTGCTTCCGGGTTTAATAGATGCCGTCAGCCACCAATGTATTATGAGCG
CGATCGACCGAAATGCCACCCTAAAGCAGTCCTACCACGACGAATTGCAG
CGTCGCAAGAATCTCTGGCTTTTGTACCTTCTCCGCACGCCCGTGTTTGA
AAGTCTTACCCAGCCCTTTGCGGGCGCTCTGGACCGCAGCGTTGGTCGGG
TGCCATTGGTGGGTGGTTTGGCCAACTACGGGTTCCAGGCCCTCCTTTAC
GTTCAGCGGCATTTCACCCTCACCTCGGGCTCGTAAGTGCGGTAAACGCC
AACAACACGCACGAAGAAAAAGAGAGCGGGTGTGTCGTATTGGCTGATAG
GAGGCGCTAGATGAGCGCACACAAAATAGATAAACATGTGTGCTCAGATA
AATAGTTGAGTTACAAACATGTGCTGATGCTTGCTTAAAATTGCAAT

protein sequence of jgi.p|Nanoce1779_2|582604

>mRNA_3561-protein ID=mRNA_3561-protein|Name=jgi.p|Nanoce1779_2|582604|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MNTYVNFVRNHALLVRPVEGLLRTVTFFLPSRFHENGNGEITTEAALAAS
NVLTLVNDLILLRPVRNTAALLPHPEDRIGLVLMLISHTEVLLEKVSMRL
GNGAEHSVVLSLEALKAILRLKLLHLQHQEGNTETKLILDGGRVITSFDN
PMSPLPLTTTTMSAAGPSLGPASESPAVDADEDQEEEEMLLRVVRRKGGS
LECKRREDSTPRHEWRRGRRTGRKFLYYAGGERNQVVEEGKNGSHEDDHD
KANIDSSSSPTSSSSSSSASSSTSPAPSQVAPITAVADNVICPGLVRSME
EEEAVVAKARTRLLLTGEVLHILRPLLFAYLRWLLARRRFYIQRPVAIAA
SVGSGRKRTIPELLSSLPSAAPEWLPLLLPGLIDAVSHQCIMSAIDRNAT
LKQSYHDELQRRKNLWLLYLLRTPVFESLTQPFAGALDRSVGRVPLVGGL
ANYGFQALLYVQRHFTLTSGS*

mRNA from alignment at scaffold_6:656838..658684+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3561 ID=mRNA_3561|Name=jgi.p|Nanoce1779_2|582604|organism=Nannochloropsis oceanica|type=mRNA|length=1847bp|location=Sequence derived from alignment at scaffold_6:656838..658684+ (Nannochloropsis oceanica)
ACAGAAGCTCGTGTCCTGCGTTCAGAAGCCATCCGAAAAGGCGGGGAGCA
TCATTATCGAGATCCCGCAGACAGCACACCTTTGCTTTGCCTGCTCAGCA
GGCTTCCGTCACAGTGAAGCGCAGTTTCCCCAGCTATATCACCACCTTGT
CGTCGCGAGTCTTAATAACGAATCCAGCGCGGAGCCATTTTCAATTGGTG
CAGTGCAAGGATAGCCATAGCAGGCTCCTCTCTCTCTACCTCGCTATTCT
TACCGGGCCCTTCTCGCAGGATGAATACCTACGTCAACTTTGTTCGAAAC
CACGCACTGCTCGTCCGCCCAGTCGAGGGTCTGCTGCGCACTGTGACATT
CTTCCTACCGTCCCGCTTCCACGAAAATGGGAATGGGGAGATCACCACCG
AGGCAGCTTTGGCCGCCAGCAATGTCCTCACCTTGGTGAATGATCTAATA
CTGCTTAGGCCAGTTAGAAATACGGCAGCACTCCTGCCCCACCCAGAAGA
CCGCATTGGGTTGGTCCTTATGCTCATCAGTCACACGGAAGTGCTGTTGG
AGAAGGTTTCAATGCGGCTTGGGAACGGCGCCGAGCATTCGGTGGTTTTG
TCCCTGGAAGCCCTAAAAGCCATCTTACGCCTCAAGCTTCTCCACCTCCA
ACATCAAGAAGGAAACACGGAGACCAAGCTGATTCTGGACGGTGGGCGTG
TCATCACATCATTTGACAACCCCATGTCGCCCCTCCCTCTGACCACGACG
ACGATGTCGGCAGCCGGCCCGTCATTGGGACCAGCCTCCGAGTCCCCAGC
GGTGGATGCCGACGAGGACCAGGAGGAAGAGGAGATGCTGTTGCGTGTCG
TACGGAGAAAAGGAGGAAGTTTGGAATGTAAACGAAGAGAGGACAGTACC
CCTCGGCATGAATGGAGGCGGGGCAGACGGACAGGGCGCAAGTTTTTGTA
CTATGCAGGTGGTGAGAGAAACCAGGTTGTTGAAGAAGGTAAGAATGGAT
CCCATGAGGACGATCACGACAAGGCCAACATCGACTCCTCTTCCTCCCCG
ACTTCCTCGTCATCCTCCTCGTCCGCGTCATCGTCAACGTCGCCAGCGCC
TAGCCAGGTAGCACCTATTACGGCTGTGGCCGACAACGTTATTTGCCCGG
GTCTGGTGCGATCAATGGAAGAGGAGGAGGCTGTGGTTGCCAAGGCGCGC
ACCCGTCTATTACTTACAGGCGAGGTGCTGCACATCTTGCGCCCTCTTCT
ATTTGCCTACCTGCGCTGGTTGTTGGCCCGTCGACGCTTCTATATCCAAC
GTCCTGTCGCCATCGCAGCTTCTGTCGGTAGTGGCCGTAAGCGAACCATA
CCAGAGCTGCTCTCCTCCTTACCGTCGGCAGCTCCTGAGTGGCTGCCCCT
ACTGCTTCCGGGTTTAATAGATGCCGTCAGCCACCAATGTATTATGAGCG
CGATCGACCGAAATGCCACCCTAAAGCAGTCCTACCACGACGAATTGCAG
CGTCGCAAGAATCTCTGGCTTTTGTACCTTCTCCGCACGCCCGTGTTTGA
AAGTCTTACCCAGCCCTTTGCGGGCGCTCTGGACCGCAGCGTTGGTCGGG
TGCCATTGGTGGGTGGTTTGGCCAACTACGGGTTCCAGGCCCTCCTTTAC
GTTCAGCGGCATTTCACCCTCACCTCGGGCTCGTAAGTGCGGTAAACGCC
AACAACACGCACGAAGAAAAAGAGAGCGGGTGTGTCGTATTGGCTGATAG
GAGGCGCTAGATGAGCGCACACAAAATAGATAAACATGTGTGCTCAGATA
AATAGTTGAGTTACAAACATGTGCTGATGCTTGCTTAAAATTGCAAT

Coding sequence (CDS) from alignment at scaffold_6:656838..658684+

>mRNA_3561 ID=mRNA_3561|Name=jgi.p|Nanoce1779_2|582604|organism=Nannochloropsis oceanica|type=CDS|length=1416bp|location=Sequence derived from alignment at scaffold_6:656838..658684+ (Nannochloropsis oceanica)
ATGAATACCTACGTCAACTTTGTTCGAAACCACGCACTGCTCGTCCGCCC
AGTCGAGGGTCTGCTGCGCACTGTGACATTCTTCCTACCGTCCCGCTTCC
ACGAAAATGGGAATGGGGAGATCACCACCGAGGCAGCTTTGGCCGCCAGC
AATGTCCTCACCTTGGTGAATGATCTAATACTGCTTAGGCCAGTTAGAAA
TACGGCAGCACTCCTGCCCCACCCAGAAGACCGCATTGGGTTGGTCCTTA
TGCTCATCAGTCACACGGAAGTGCTGTTGGAGAAGGTTTCAATGCGGCTT
GGGAACGGCGCCGAGCATTCGGTGGTTTTGTCCCTGGAAGCCCTAAAAGC
CATCTTACGCCTCAAGCTTCTCCACCTCCAACATCAAGAAGGAAACACGG
AGACCAAGCTGATTCTGGACGGTGGGCGTGTCATCACATCATTTGACAAC
CCCATGTCGCCCCTCCCTCTGACCACGACGACGATGTCGGCAGCCGGCCC
GTCATTGGGACCAGCCTCCGAGTCCCCAGCGGTGGATGCCGACGAGGACC
AGGAGGAAGAGGAGATGCTGTTGCGTGTCGTACGGAGAAAAGGAGGAAGT
TTGGAATGTAAACGAAGAGAGGACAGTACCCCTCGGCATGAATGGAGGCG
GGGCAGACGGACAGGGCGCAAGTTTTTGTACTATGCAGGTGGTGAGAGAA
ACCAGGTTGTTGAAGAAGGTAAGAATGGATCCCATGAGGACGATCACGAC
AAGGCCAACATCGACTCCTCTTCCTCCCCGACTTCCTCGTCATCCTCCTC
GTCCGCGTCATCGTCAACGTCGCCAGCGCCTAGCCAGGTAGCACCTATTA
CGGCTGTGGCCGACAACGTTATTTGCCCGGGTCTGGTGCGATCAATGGAA
GAGGAGGAGGCTGTGGTTGCCAAGGCGCGCACCCGTCTATTACTTACAGG
CGAGGTGCTGCACATCTTGCGCCCTCTTCTATTTGCCTACCTGCGCTGGT
TGTTGGCCCGTCGACGCTTCTATATCCAACGTCCTGTCGCCATCGCAGCT
TCTGTCGGTAGTGGCCGTAAGCGAACCATACCAGAGCTGCTCTCCTCCTT
ACCGTCGGCAGCTCCTGAGTGGCTGCCCCTACTGCTTCCGGGTTTAATAG
ATGCCGTCAGCCACCAATGTATTATGAGCGCGATCGACCGAAATGCCACC
CTAAAGCAGTCCTACCACGACGAATTGCAGCGTCGCAAGAATCTCTGGCT
TTTGTACCTTCTCCGCACGCCCGTGTTTGAAAGTCTTACCCAGCCCTTTG
CGGGCGCTCTGGACCGCAGCGTTGGTCGGGTGCCATTGGTGGGTGGTTTG
GCCAACTACGGGTTCCAGGCCCTCCTTTACGTTCAGCGGCATTTCACCCT
CACCTCGGGCTCGTAA

Synonyms

Publications