jgi.p|Nanoce1779_2|582589, mRNA_3557 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582589
Unique NamemRNA_3557
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1435
Alignment locationscaffold_6:646191..647625 +

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Properties
Property NameValue
TranscriptId582675
TrackFilteredModels2
ProteinId582589
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:646191..647625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582589gene_3557Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582589mRNA_3557-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3557CDS_3557Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3557 ID=mRNA_3557|Name=jgi.p|Nanoce1779_2|582589|organism=Nannochloropsis oceanica|type=mRNA|length=1435bp
ACAGCGCATCTACCTGGATGGCATCTCCCCCACCCAGCACCAGCACCGAC
AACCCCACCCCACCCGTCCACGGTCCCATCAAGCGGGACGTCCTATTCAC
CAACCCACCACCCTTTCCTCTGCCCTTCTATAAGTACGTCTCGTTGCCAC
AGACACCCGCGGGAACGGTGGCAGTGGCACCGCCCAATCCCCAGGAAAAT
TGTGTTGGCCGAAGTGTGTTTGGCGCAATTGCAGGTGCGGGACTGGGCGT
GATGATGGGCATTTTTCTGGGTGCTATGGGAGACATGTCACCCGCTATCC
CCATTATCAATGGCCGAGAGGCCCCGCAGGCACCTGCGGGGGAGCAGATG
CGCCTGGCCTATCGCGCCACCTTCGAGCGCTGCGGGCATTGGGCCCGCAA
TTTCATGGCCCTCACCGCCTTGTTTTCGGGTGTGGACTGTGTTGTGGAAA
AGTTCCGTGGCAAGCACGATGCATATAATGCGGTTATCTCTGGCTGTGGG
GTTGGGGCTGCGCTCTCGGCCAAGCAAGGTCCCCAGGCGGCGTGTCTGGG
ATGCGCGGGATTTGCCATTTTTTCGGGCGTCATGGAGGTTGTGATGGGGC
CACATTAAGTATATGAGCAGAAAAATTTGACGAGAATGATGAATTTGGAA
TATTTGGAGATTAACATAGTAATCTTTGTTATGTTGAAATTGCTGTTGCT
TTTTATTTTCCCCATGTGCCGCGGGGGGTTCCTACGGATAAGTAAGAAAG
CAGGAGGGAAGCAGCAAAACCCATGAGCCAGTCTCCCACCAGACAGCTTG
TCCTATTCATCCACAAACCATAAAGTAATCAACACCGACACGTGAATCAA
TAGATCTAGCCTATCTTATCACCTCCTGGGGACGTCCCTCCACAAAGCCC
CTCCTTCGATCCTCTTATTCCTCTTACGACGACTTCTTCATCGGCCCCAC
GTCCCCGGCAATGAATTTTTGAATGGCCTTCACAAATGCCACCCCTTCCA
ACGGCTGTACCTTGGCCTTGAGACTCTCCGGCGTCTCTCCCTCCATCACC
GCGGTGTGTTCCTGTACAACAATGGGGCCCGCATCCACCTCCTCTGTCAC
AAAATGAACCGTACAGCCGCTCTCTGTCCTGCCTGCCGCAATAACTGCAG
CATGGACATCCAAATCCATGCCACCCGCAAAGTCAGGCAACAGGGAGGGG
TGCACATTCAAGCAGCGATCTTTCCATCGTCGGCAGAAGGCGGCTGACAA
GATGCGCATGTACCCTATCAGAAGCACTAGCTCGACACCCGCGTCCTCCA
AAAGCTGCGTGGCCTCCGCGTCAAAGTCCTCGCGGGTCTTGCCTTTAGCC
AAGATACTCGTGGCAGGGATGCCGTACCGTCGTGCCCGATTCAAGATACC
GGCGTCTGCCTTGTTCGACACAACCCGGACCACAC
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protein sequence of jgi.p|Nanoce1779_2|582589

>mRNA_3557-protein ID=mRNA_3557-protein|Name=jgi.p|Nanoce1779_2|582589|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MASPPPSTSTDNPTPPVHGPIKRDVLFTNPPPFPLPFYKYVSLPQTPAGT
VAVAPPNPQENCVGRSVFGAIAGAGLGVMMGIFLGAMGDMSPAIPIINGR
EAPQAPAGEQMRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKH
DAYNAVISGCGVGAALSAKQGPQAACLGCAGFAIFSGVMEVVMGPH*
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mRNA from alignment at scaffold_6:646191..647625+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3557 ID=mRNA_3557|Name=jgi.p|Nanoce1779_2|582589|organism=Nannochloropsis oceanica|type=mRNA|length=1435bp|location=Sequence derived from alignment at scaffold_6:646191..647625+ (Nannochloropsis oceanica)
ACAGCGCATCTACCTGGATGGCATCTCCCCCACCCAGCACCAGCACCGAC
AACCCCACCCCACCCGTCCACGGTCCCATCAAGCGGGACGTCCTATTCAC
CAACCCACCACCCTTTCCTCTGCCCTTCTATAAGTACGTCTCGTTGCCAC
AGACACCCGCGGGAACGGTGGCAGTGGCACCGCCCAATCCCCAGGAAAAT
TGTGTTGGCCGAAGTGTGTTTGGCGCAATTGCAGGTGCGGGACTGGGCGT
GATGATGGGCATTTTTCTGGGTGCTATGGGAGACATGTCACCCGCTATCC
CCATTATCAATGGCCGAGAGGCCCCGCAGGCACCTGCGGGGGAGCAGATG
CGCCTGGCCTATCGCGCCACCTTCGAGCGCTGCGGGCATTGGGCCCGCAA
TTTCATGGCCCTCACCGCCTTGTTTTCGGGTGTGGACTGTGTTGTGGAAA
AGTTCCGTGGCAAGCACGATGCATATAATGCGGTTATCTCTGGCTGTGGG
GTTGGGGCTGCGCTCTCGGCCAAGCAAGGTCCCCAGGCGGCGTGTCTGGG
ATGCGCGGGATTTGCCATTTTTTCGGGCGTCATGGAGGTTGTGATGGGGC
CACATTAAGTATATGAGCAGAAAAATTTGACGAGAATGATGAATTTGGAA
TATTTGGAGATTAACATAGTAATCTTTGTTATGTTGAAATTGCTGTTGCT
TTTTATTTTCCCCATGTGCCGCGGGGGGTTCCTACGGATAAGTAAGAAAG
CAGGAGGGAAGCAGCAAAACCCATGAGCCAGTCTCCCACCAGACAGCTTG
TCCTATTCATCCACAAACCATAAAGTAATCAACACCGACACGTGAATCAA
TAGATCTAGCCTATCTTATCACCTCCTGGGGACGTCCCTCCACAAAGCCC
CTCCTTCGATCCTCTTATTCCTCTTACGACGACTTCTTCATCGGCCCCAC
GTCCCCGGCAATGAATTTTTGAATGGCCTTCACAAATGCCACCCCTTCCA
ACGGCTGTACCTTGGCCTTGAGACTCTCCGGCGTCTCTCCCTCCATCACC
GCGGTGTGTTCCTGTACAACAATGGGGCCCGCATCCACCTCCTCTGTCAC
AAAATGAACCGTACAGCCGCTCTCTGTCCTGCCTGCCGCAATAACTGCAG
CATGGACATCCAAATCCATGCCACCCGCAAAGTCAGGCAACAGGGAGGGG
TGCACATTCAAGCAGCGATCTTTCCATCGTCGGCAGAAGGCGGCTGACAA
GATGCGCATGTACCCTATCAGAAGCACTAGCTCGACACCCGCGTCCTCCA
AAAGCTGCGTGGCCTCCGCGTCAAAGTCCTCGCGGGTCTTGCCTTTAGCC
AAGATACTCGTGGCAGGGATGCCGTACCGTCGTGCCCGATTCAAGATACC
GGCGTCTGCCTTGTTCGACACAACCCGGACCACAC
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Coding sequence (CDS) from alignment at scaffold_6:646191..647625+

>mRNA_3557 ID=mRNA_3557|Name=jgi.p|Nanoce1779_2|582589|organism=Nannochloropsis oceanica|type=CDS|length=591bp|location=Sequence derived from alignment at scaffold_6:646191..647625+ (Nannochloropsis oceanica)
ATGGCATCTCCCCCACCCAGCACCAGCACCGACAACCCCACCCCACCCGT
CCACGGTCCCATCAAGCGGGACGTCCTATTCACCAACCCACCACCCTTTC
CTCTGCCCTTCTATAAGTACGTCTCGTTGCCACAGACACCCGCGGGAACG
GTGGCAGTGGCACCGCCCAATCCCCAGGAAAATTGTGTTGGCCGAAGTGT
GTTTGGCGCAATTGCAGGTGCGGGACTGGGCGTGATGATGGGCATTTTTC
TGGGTGCTATGGGAGACATGTCACCCGCTATCCCCATTATCAATGGCCGA
GAGGCCCCGCAGGCACCTGCGGGGGAGCAGATGCGCCTGGCCTATCGCGC
CACCTTCGAGCGCTGCGGGCATTGGGCCCGCAATTTCATGGCCCTCACCG
CCTTGTTTTCGGGTGTGGACTGTGTTGTGGAAAAGTTCCGTGGCAAGCAC
GATGCATATAATGCGGTTATCTCTGGCTGTGGGGTTGGGGCTGCGCTCTC
GGCCAAGCAAGGTCCCCAGGCGGCGTGTCTGGGATGCGCGGGATTTGCCA
TTTTTTCGGGCGTCATGGAGGTTGTGATGGGGCCACATTAA
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Synonyms
Publications