jgi.p|Nanoce1779_2|582584, mRNA_3556 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582584
Unique Name	mRNA_3556
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2671
Alignment location	scaffold_6:642780..645450 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582670
Track	FilteredModels2
ProteinId	582584

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:642780..645450 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582584	gene_3556	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582584	mRNA_3556-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3556	CDS_3556	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:642780..645450-
coding sequence from alignment at scaffold_6:642780..645450-

mRNA sequence

>mRNA_3556 ID=mRNA_3556|Name=jgi.p|Nanoce1779_2|582584|organism=Nannochloropsis oceanica|type=mRNA|length=2671bp
ACAGGCGACAAACACGCATACCATGAGGGAACGACGAACTATGCAACGGA
CTGTCCTTGTTCTCGTCGCAATACTCGGTCAGACTAGCGCTTGGCTGCCC
GCACCAAGCTCAAGCTTGCCCTCGCGTGGAACCTTGACGAGACCTTTTTT
GCCCTCTCCTTCGCGGTTTTTCCGTAGCTCGTACACCGTCACCATGATGG
CCGAGAGCTTGCCTGTCGCACAGCGGGTCCAGGCGGAGCTCATACCCTCG
GAACCCTTCAGGCCCGACTTAGGCGTGGGACGCGACGCCAAACTGACCAA
GGTTTTGGAGCTGAACGACGGTGCCGTGGACTTCGTGCGCGTTAATATCA
ATGCGTTGACGCTGTCGGCTGTGAAAAAGATGAATGATAAGGGCGCGGAT
TGCTGCCTCGTCTTTGACATGGACGGTGGCTTGGCGGGGATTTTCACGGA
GCGTGACTACATTCGCAAGATTGTTGAGGCCAACCGCGCTACAAAGGAGA
CTCCCATCGCCGAGGTCATGACGTCGGCTGATAAAATCGTGAGCGCACCG
CCTGAACTGACCGTCGGTGAATGCATGGCAATGATGGTTCAAAACAAGAT
CCGGCACGTGCCTATTCGCGCCATGCCCCAAGGTGAGGTGATGGGCGTGA
TTTCTACAACTGACCTGGTCAACACGATGAAGCGCGATGACGAGAGCTTG
GCGGGGGCGTTGCCTATTGGCGCCCTGGAGCCCGCTCTGATCAATGACTT
GCTCAGCCGCACCCGCGAGCGGGCCAATGAGATGGCTGTCAAGGGTGGGC
CGAAGCTTGGGGCGCAGGATTTAGTGCGTGGCGGTTTGGTGGGTGTGGGT
GCAGGGGTGCTAGCTTTGTTGCTGCAGGGCAACTGGTTGCATGACCACGA
GGTGCTTTCGATGTGTGCGATTTTCTGCTTGGGTTATGTGAGTATCATCT
TTGAGAATATTTTTGAATTCAATAAGGCGGCCGTAGGTCTGTTGATGGCC
GTAGCACTCTGGGTCATTTATGCGGGCACGGCAGGCGGGGCGGGTATTGC
ATCGATTGGCGCATTAAAGGAGCTGTCGGAGCACGTGGCCGAGGTGTCGG
AGATCATTTTTTTCTTGCTGGGCGCCATGACGATTGTGGAGATTGTGGAC
TCGCATCAAGGCTTCCGCGTGGTGACAGACCTGATCAAGACCACCAGTAA
GAAGGCCCTTATGTGGACTATTGGCCTCTTGGCATTTTTCATGAGCTCCG
TGCTCGACAACCTGACGACCACCATTGTTCTGCTCTCACTACTCCGCAAG
CTTATTCCAAATCCCGAGGTCCGCAAGCTCTTCGGTGCTTTGGTAGTGAT
AGCCGCCAATGCCGGCGGGGCCTGGACGCCCATCGGCGACCTTACCACGA
CCATGCTGTGGATCAATGGTCAGATCTCCGCCTTTCCCACCATGCGGGAC
CTGGTCTTACCATCCCTCGTCTCGCTCGTCATCAGCACCTATCTCCTCAC
TTGGGGCATGCCGAATTCGGACCCGGAATTCGAGAAAGAAATGGCTGCCA
GCCAACAAAACGCCGTCACCACTGAGCTGGCCCCCCGTGGTAAGCTCGTC
TTTGCCACGGGCCTAGCTGGCCTTCTAAGTGTTCCTGTTTTCAAGGCCTT
GACGGGCCTACCGCCCTACCTGGGCATGCTCTCCGCTTTGGGGGTTATGT
GGGTCCTGACTGATACCATCCACGCCGGTGAGTCAGAAGAGGAGCTGAAG
GTGCCCGCAGCGTTGGCCAAGATTGACGTATCAGGGATTTTGTTTTTCTT
TGGTATTTTGCTGTCTGTGGGCGCACTGGACTCGGCAGGCATCCTGCAGT
CTCTGGCCTCCTTTCTCCAGACAAGTATTCCCTCGGAAAAAGTTATCGCC
ACTGTCATTGGTATCTTCAGCGCCATAATTGATAATGTGCCCTTGGTGGC
TGCCACTATGTCGATGTACGACATCAACACCACGCCCATGGATGCCCCGC
TTTGGCAGCTTGTTGCCTATTGCGCCGGCACAGGTGGTTCTCTCCTGGTC
ATTGGAAGTGCTGCCGGCGTGGCTCTGATGGGCTTGGAGAAGGTGGACTT
CTTGTGGTATGCCAAGAAGATCACGGCCTCGGCTTTTGTGGGATACATGG
GCGGCGTTGGCACCTATTTGGCGTTGAAATTTGGACTGGGTTCGGCAGTG
AGTGCTGCAGTTTTGCCCATCGTTGCATCCTTTTTTGATGGAAGGATTCC
CCTGATTGGCGGCGGCATGTAAAATACATTGAACAGCGAAGGGAGAAAAT
ATTAGGAAAACGAAGAGTGAGCCCCGGCGAGTGAAGGTGGCTGGAAAGAA
ACCATGGCGTGCCTTCAGGCCAGAGCTCTCAGGAGGCGGCACTTTCTATG
TCTTTGTGTCGTGTCTGCGCGTACACCGTGTCTGTGTCTGTGTTTTGGAT
GTTTCATGTGTCATGTCGTCAGAGAGGAAGCGCTGTAGAAATACTAAGTC
AGATCTGCGTTGCCGCACGCCTCTCTTGGTTGGTGAAAAGAAGAAGGATT
AGATTGAAAATCATGGTTTGTGTGTGACGTTTATTTCTTTCGTTTTCTCC
CTGGCAGGAGGGGTGGGGAGGTCCCAGGAGGGTGAAATGCCCTGCACGAC
AGTGCAGGCCTGCTTTGGCAT

protein sequence of jgi.p|Nanoce1779_2|582584

>mRNA_3556-protein ID=mRNA_3556-protein|Name=jgi.p|Nanoce1779_2|582584|organism=Nannochloropsis oceanica|type=polypeptide|length=750bp
MRERRTMQRTVLVLVAILGQTSAWLPAPSSSLPSRGTLTRPFLPSPSRFF
RSSYTVTMMAESLPVAQRVQAELIPSEPFRPDLGVGRDAKLTKVLELNDG
AVDFVRVNINALTLSAVKKMNDKGADCCLVFDMDGGLAGIFTERDYIRKI
VEANRATKETPIAEVMTSADKIVSAPPELTVGECMAMMVQNKIRHVPIRA
MPQGEVMGVISTTDLVNTMKRDDESLAGALPIGALEPALINDLLSRTRER
ANEMAVKGGPKLGAQDLVRGGLVGVGAGVLALLLQGNWLHDHEVLSMCAI
FCLGYVSIIFENIFEFNKAAVGLLMAVALWVIYAGTAGGAGIASIGALKE
LSEHVAEVSEIIFFLLGAMTIVEIVDSHQGFRVVTDLIKTTSKKALMWTI
GLLAFFMSSVLDNLTTTIVLLSLLRKLIPNPEVRKLFGALVVIAANAGGA
WTPIGDLTTTMLWINGQISAFPTMRDLVLPSLVSLVISTYLLTWGMPNSD
PEFEKEMAASQQNAVTTELAPRGKLVFATGLAGLLSVPVFKALTGLPPYL
GMLSALGVMWVLTDTIHAGESEEELKVPAALAKIDVSGILFFFGILLSVG
ALDSAGILQSLASFLQTSIPSEKVIATVIGIFSAIIDNVPLVAATMSMYD
INTTPMDAPLWQLVAYCAGTGGSLLVIGSAAGVALMGLEKVDFLWYAKKI
TASAFVGYMGGVGTYLALKFGLGSAVSAAVLPIVASFFDGRIPLIGGGM*

mRNA from alignment at scaffold_6:642780..645450-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3556 ID=mRNA_3556|Name=jgi.p|Nanoce1779_2|582584|organism=Nannochloropsis oceanica|type=mRNA|length=2671bp|location=Sequence derived from alignment at scaffold_6:642780..645450- (Nannochloropsis oceanica)
ACAGGCGACAAACACGCATACCATGAGGGAACGACGAACTATGCAACGGA
CTGTCCTTGTTCTCGTCGCAATACTCGGTCAGACTAGCGCTTGGCTGCCC
GCACCAAGCTCAAGCTTGCCCTCGCGTGGAACCTTGACGAGACCTTTTTT
GCCCTCTCCTTCGCGGTTTTTCCGTAGCTCGTACACCGTCACCATGATGG
CCGAGAGCTTGCCTGTCGCACAGCGGGTCCAGGCGGAGCTCATACCCTCG
GAACCCTTCAGGCCCGACTTAGGCGTGGGACGCGACGCCAAACTGACCAA
GGTTTTGGAGCTGAACGACGGTGCCGTGGACTTCGTGCGCGTTAATATCA
ATGCGTTGACGCTGTCGGCTGTGAAAAAGATGAATGATAAGGGCGCGGAT
TGCTGCCTCGTCTTTGACATGGACGGTGGCTTGGCGGGGATTTTCACGGA
GCGTGACTACATTCGCAAGATTGTTGAGGCCAACCGCGCTACAAAGGAGA
CTCCCATCGCCGAGGTCATGACGTCGGCTGATAAAATCGTGAGCGCACCG
CCTGAACTGACCGTCGGTGAATGCATGGCAATGATGGTTCAAAACAAGAT
CCGGCACGTGCCTATTCGCGCCATGCCCCAAGGTGAGGTGATGGGCGTGA
TTTCTACAACTGACCTGGTCAACACGATGAAGCGCGATGACGAGAGCTTG
GCGGGGGCGTTGCCTATTGGCGCCCTGGAGCCCGCTCTGATCAATGACTT
GCTCAGCCGCACCCGCGAGCGGGCCAATGAGATGGCTGTCAAGGGTGGGC
CGAAGCTTGGGGCGCAGGATTTAGTGCGTGGCGGTTTGGTGGGTGTGGGT
GCAGGGGTGCTAGCTTTGTTGCTGCAGGGCAACTGGTTGCATGACCACGA
GGTGCTTTCGATGTGTGCGATTTTCTGCTTGGGTTATGTGAGTATCATCT
TTGAGAATATTTTTGAATTCAATAAGGCGGCCGTAGGTCTGTTGATGGCC
GTAGCACTCTGGGTCATTTATGCGGGCACGGCAGGCGGGGCGGGTATTGC
ATCGATTGGCGCATTAAAGGAGCTGTCGGAGCACGTGGCCGAGGTGTCGG
AGATCATTTTTTTCTTGCTGGGCGCCATGACGATTGTGGAGATTGTGGAC
TCGCATCAAGGCTTCCGCGTGGTGACAGACCTGATCAAGACCACCAGTAA
GAAGGCCCTTATGTGGACTATTGGCCTCTTGGCATTTTTCATGAGCTCCG
TGCTCGACAACCTGACGACCACCATTGTTCTGCTCTCACTACTCCGCAAG
CTTATTCCAAATCCCGAGGTCCGCAAGCTCTTCGGTGCTTTGGTAGTGAT
AGCCGCCAATGCCGGCGGGGCCTGGACGCCCATCGGCGACCTTACCACGA
CCATGCTGTGGATCAATGGTCAGATCTCCGCCTTTCCCACCATGCGGGAC
CTGGTCTTACCATCCCTCGTCTCGCTCGTCATCAGCACCTATCTCCTCAC
TTGGGGCATGCCGAATTCGGACCCGGAATTCGAGAAAGAAATGGCTGCCA
GCCAACAAAACGCCGTCACCACTGAGCTGGCCCCCCGTGGTAAGCTCGTC
TTTGCCACGGGCCTAGCTGGCCTTCTAAGTGTTCCTGTTTTCAAGGCCTT
GACGGGCCTACCGCCCTACCTGGGCATGCTCTCCGCTTTGGGGGTTATGT
GGGTCCTGACTGATACCATCCACGCCGGTGAGTCAGAAGAGGAGCTGAAG
GTGCCCGCAGCGTTGGCCAAGATTGACGTATCAGGGATTTTGTTTTTCTT
TGGTATTTTGCTGTCTGTGGGCGCACTGGACTCGGCAGGCATCCTGCAGT
CTCTGGCCTCCTTTCTCCAGACAAGTATTCCCTCGGAAAAAGTTATCGCC
ACTGTCATTGGTATCTTCAGCGCCATAATTGATAATGTGCCCTTGGTGGC
TGCCACTATGTCGATGTACGACATCAACACCACGCCCATGGATGCCCCGC
TTTGGCAGCTTGTTGCCTATTGCGCCGGCACAGGTGGTTCTCTCCTGGTC
ATTGGAAGTGCTGCCGGCGTGGCTCTGATGGGCTTGGAGAAGGTGGACTT
CTTGTGGTATGCCAAGAAGATCACGGCCTCGGCTTTTGTGGGATACATGG
GCGGCGTTGGCACCTATTTGGCGTTGAAATTTGGACTGGGTTCGGCAGTG
AGTGCTGCAGTTTTGCCCATCGTTGCATCCTTTTTTGATGGAAGGATTCC
CCTGATTGGCGGCGGCATGTAAAATACATTGAACAGCGAAGGGAGAAAAT
ATTAGGAAAACGAAGAGTGAGCCCCGGCGAGTGAAGGTGGCTGGAAAGAA
ACCATGGCGTGCCTTCAGGCCAGAGCTCTCAGGAGGCGGCACTTTCTATG
TCTTTGTGTCGTGTCTGCGCGTACACCGTGTCTGTGTCTGTGTTTTGGAT
GTTTCATGTGTCATGTCGTCAGAGAGGAAGCGCTGTAGAAATACTAAGTC
AGATCTGCGTTGCCGCACGCCTCTCTTGGTTGGTGAAAAGAAGAAGGATT
AGATTGAAAATCATGGTTTGTGTGTGACGTTTATTTCTTTCGTTTTCTCC
CTGGCAGGAGGGGTGGGGAGGTCCCAGGAGGGTGAAATGCCCTGCACGAC
AGTGCAGGCCTGCTTTGGCAT

Coding sequence (CDS) from alignment at scaffold_6:642780..645450-

>mRNA_3556 ID=mRNA_3556|Name=jgi.p|Nanoce1779_2|582584|organism=Nannochloropsis oceanica|type=CDS|length=2250bp|location=Sequence derived from alignment at scaffold_6:642780..645450- (Nannochloropsis oceanica)
ATGAGGGAACGACGAACTATGCAACGGACTGTCCTTGTTCTCGTCGCAAT
ACTCGGTCAGACTAGCGCTTGGCTGCCCGCACCAAGCTCAAGCTTGCCCT
CGCGTGGAACCTTGACGAGACCTTTTTTGCCCTCTCCTTCGCGGTTTTTC
CGTAGCTCGTACACCGTCACCATGATGGCCGAGAGCTTGCCTGTCGCACA
GCGGGTCCAGGCGGAGCTCATACCCTCGGAACCCTTCAGGCCCGACTTAG
GCGTGGGACGCGACGCCAAACTGACCAAGGTTTTGGAGCTGAACGACGGT
GCCGTGGACTTCGTGCGCGTTAATATCAATGCGTTGACGCTGTCGGCTGT
GAAAAAGATGAATGATAAGGGCGCGGATTGCTGCCTCGTCTTTGACATGG
ACGGTGGCTTGGCGGGGATTTTCACGGAGCGTGACTACATTCGCAAGATT
GTTGAGGCCAACCGCGCTACAAAGGAGACTCCCATCGCCGAGGTCATGAC
GTCGGCTGATAAAATCGTGAGCGCACCGCCTGAACTGACCGTCGGTGAAT
GCATGGCAATGATGGTTCAAAACAAGATCCGGCACGTGCCTATTCGCGCC
ATGCCCCAAGGTGAGGTGATGGGCGTGATTTCTACAACTGACCTGGTCAA
CACGATGAAGCGCGATGACGAGAGCTTGGCGGGGGCGTTGCCTATTGGCG
CCCTGGAGCCCGCTCTGATCAATGACTTGCTCAGCCGCACCCGCGAGCGG
GCCAATGAGATGGCTGTCAAGGGTGGGCCGAAGCTTGGGGCGCAGGATTT
AGTGCGTGGCGGTTTGGTGGGTGTGGGTGCAGGGGTGCTAGCTTTGTTGC
TGCAGGGCAACTGGTTGCATGACCACGAGGTGCTTTCGATGTGTGCGATT
TTCTGCTTGGGTTATGTGAGTATCATCTTTGAGAATATTTTTGAATTCAA
TAAGGCGGCCGTAGGTCTGTTGATGGCCGTAGCACTCTGGGTCATTTATG
CGGGCACGGCAGGCGGGGCGGGTATTGCATCGATTGGCGCATTAAAGGAG
CTGTCGGAGCACGTGGCCGAGGTGTCGGAGATCATTTTTTTCTTGCTGGG
CGCCATGACGATTGTGGAGATTGTGGACTCGCATCAAGGCTTCCGCGTGG
TGACAGACCTGATCAAGACCACCAGTAAGAAGGCCCTTATGTGGACTATT
GGCCTCTTGGCATTTTTCATGAGCTCCGTGCTCGACAACCTGACGACCAC
CATTGTTCTGCTCTCACTACTCCGCAAGCTTATTCCAAATCCCGAGGTCC
GCAAGCTCTTCGGTGCTTTGGTAGTGATAGCCGCCAATGCCGGCGGGGCC
TGGACGCCCATCGGCGACCTTACCACGACCATGCTGTGGATCAATGGTCA
GATCTCCGCCTTTCCCACCATGCGGGACCTGGTCTTACCATCCCTCGTCT
CGCTCGTCATCAGCACCTATCTCCTCACTTGGGGCATGCCGAATTCGGAC
CCGGAATTCGAGAAAGAAATGGCTGCCAGCCAACAAAACGCCGTCACCAC
TGAGCTGGCCCCCCGTGGTAAGCTCGTCTTTGCCACGGGCCTAGCTGGCC
TTCTAAGTGTTCCTGTTTTCAAGGCCTTGACGGGCCTACCGCCCTACCTG
GGCATGCTCTCCGCTTTGGGGGTTATGTGGGTCCTGACTGATACCATCCA
CGCCGGTGAGTCAGAAGAGGAGCTGAAGGTGCCCGCAGCGTTGGCCAAGA
TTGACGTATCAGGGATTTTGTTTTTCTTTGGTATTTTGCTGTCTGTGGGC
GCACTGGACTCGGCAGGCATCCTGCAGTCTCTGGCCTCCTTTCTCCAGAC
AAGTATTCCCTCGGAAAAAGTTATCGCCACTGTCATTGGTATCTTCAGCG
CCATAATTGATAATGTGCCCTTGGTGGCTGCCACTATGTCGATGTACGAC
ATCAACACCACGCCCATGGATGCCCCGCTTTGGCAGCTTGTTGCCTATTG
CGCCGGCACAGGTGGTTCTCTCCTGGTCATTGGAAGTGCTGCCGGCGTGG
CTCTGATGGGCTTGGAGAAGGTGGACTTCTTGTGGTATGCCAAGAAGATC
ACGGCCTCGGCTTTTGTGGGATACATGGGCGGCGTTGGCACCTATTTGGC
GTTGAAATTTGGACTGGGTTCGGCAGTGAGTGCTGCAGTTTTGCCCATCG
TTGCATCCTTTTTTGATGGAAGGATTCCCCTGATTGGCGGCGGCATGTAA

Synonyms

Publications