jgi.p|Nanoce1779_2|582583, mRNA_3555 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582583
Unique NamemRNA_3555
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1265
Alignment locationscaffold_6:641119..642779 -

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Properties
Property NameValue
TranscriptId582669
TrackFilteredModels2
ProteinId582583
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:641119..642779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582583gene_3555Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582583mRNA_3555-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3555CDS_3555Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3555 ID=mRNA_3555|Name=jgi.p|Nanoce1779_2|582583|organism=Nannochloropsis oceanica|type=mRNA|length=1265bp
GCGCCATAGATAACCGTCCCCAAACGTACACTAAAAGAAAATAAGACAAA
ATGATGCAGGTATTGATCAGCAGGCATCGCTCTCACAAAAGAATTATCAA
TCAGCTCCACTATATATAGACGGACAAAAACGAAAAAAAATCTTCAGCGA
CCCTACCCAGCCCACCCTTGCATTGCGGTAGCTCGCGATCACAACACACA
AAAGTCACGAATCCAAACCCGCCAAAATATGCTTATGTACACAGCTCCTA
CTTCCTACTGGTTGGGTGTGTCAGCCTTCGTATCCCATCGAAGCAAAAGG
TGAATCCTATACGCCATGGCCCGCGACTCACTACTGCTGTGGGGAGCTGG
TCTTTCCACCGCCGCCCTCTTGTACTACATCGTCATAGGGCTTCCTGACG
GGAGCGGCAAGGATGATGGAGACGACGATGAGCCGGCACTGAGCAAGCGG
AAGTTGATAAGTCTGTGGAGCATGTTAGTCAAAAACATGGAGCTGCACAA
GTACCAGATCCAGCAGGTCTTGCACCAGCAGCGAGCCCAACTTGCGCAAC
AAGGTACTGAGGTCCCTGACGAGCATATTGTTGCTATGTACAAGCAGAAT
TTTGAGGAGATCCTCGAAAACGTCCAAGTGCAAATTTTGGGGCACTTCGA
GGTGACGGAGGAGGAGCTTGAGGCAGCAACGGAGCTCTACAAGGACGACC
CTGAGGTCTCGGCATTGGTAGTGCAGTTGGAGGGCTTTTACCTGGGCGAG
GGAGGGGCCACTGGGGGGGAAGGTTTGGAGGGAGACATTGGTGTGGAAGA
GCTGGAGAAATTTATTGTGGAGGAATTTGGGGATGCATGGTGCGATGCAT
ATGAGAAGACGATGCGGGAATTCCAGGCTTTAGGCCGTGAACCTTCCGAG
GCCGACCAGGAGGTGCTCCTTGACTTCCAGTCACAGGCATCAGTCCGCGC
TCAGGATAATCTTACCGACTTGCTCCAGAAATACGGATTGACGTCCACAG
ATTTCCAACGATTAGTTTTGAAGCACCAGGCTGACCCCCGCATCAACCAA
GCCTTGCAGCACTCCCAGACGGTGCAAACCGAGGCACTGGCCAAAATGGG
TCTACGCGTTTGATTGTGTGGCGTAGGTGTGGCAGGCAGAAAGACCGAAG
GAATAAGAGAGAGTTACGATACACATGTCAAGCGAAGCGACAAGACAAGC
ACACACGGGTTGCAAAACATCCTTACTTCCCGTCGTACACCACAAATAGA
GAAAGTAAAAAGAAA
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protein sequence of jgi.p|Nanoce1779_2|582583

>mRNA_3555-protein ID=mRNA_3555-protein|Name=jgi.p|Nanoce1779_2|582583|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MARDSLLLWGAGLSTAALLYYIVIGLPDGSGKDDGDDDEPALSKRKLISL
WSMLVKNMELHKYQIQQVLHQQRAQLAQQGTEVPDEHIVAMYKQNFEEIL
ENVQVQILGHFEVTEEELEAATELYKDDPEVSALVVQLEGFYLGEGGATG
GEGLEGDIGVEELEKFIVEEFGDAWCDAYEKTMREFQALGREPSEADQEV
LLDFQSQASVRAQDNLTDLLQKYGLTSTDFQRLVLKHQADPRINQALQHS
QTVQTEALAKMGLRV*
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mRNA from alignment at scaffold_6:641119..642779-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3555 ID=mRNA_3555|Name=jgi.p|Nanoce1779_2|582583|organism=Nannochloropsis oceanica|type=mRNA|length=1661bp|location=Sequence derived from alignment at scaffold_6:641119..642779- (Nannochloropsis oceanica)
GCGCCATAGATAACCGTCCCCAAACGTACACTAAAAGAAAATAAGACAAA
ATGATGCAGGTATTGATCAGCAGGCATCGCTCTCACAAAAGAATTATCAA
TCAGCTCCACTATATATAGACGGACAAAAACGAAAAAAAATCTTCAGCGA
CCCTACCCAGCCCACCCTTGCATTGCGGTAGCTCGCGATCACAACACACA
AAAGTCACGAATCCAAACCCGCCAAAATATGCTTATGTACACAGCTCCTA
CTTCCTACTGGTTGGGTGTGTCAGCCTTCGTATCCCATCGAAGCAAAAGG
TGAATCCTATACGCCATGGCCCGCGACTCACTACTGCTGTGGGGAGCTGG
TCTTTCCACCGCCGCCCTCTTGTACTACATCGTCATAGGGCTTCCTGACG
GGAGCGGCAAGGATGATGGAGGTAAGTTCATTCCTCGTTCTGAAGGGGGG
TTGGTTGTAGGCCGTACGCTTCTCATGTGTAACTCTACGTGAACAGTATA
TGAGACTCATTCCCCAATGCTCTGCCTTCACCCAACCCATTTCACACGAC
CACCAATCAGACGACGATGAGCCGGCACTGAGCAAGCGGAAGTTGATAAG
TCTGTGGAGCATGTTAGTCAAAAACATGGAGCTGCACAAGTACCAGATCC
AGCAGGTCTTGCACCAGCAGCGAGCCCAACTTGCGCAACAAGGTACTGAG
GTCCCTGACGAGCATATTGGTACGTACTCGTGGAGACGGGACCTAAGGGG
GGAGGAGAAAACGAGAGGTGCGTGTCAAATTATGCTTCATGACGCTTTTA
AATTCAGGGACTCTATAGTCTGATAGCATGGCAAGCCTTGGTTCTTGTTC
GAGGCTCTCATACTTTTCTACGTGCTCTAACCCCTCCGCCGGCTTGCCGG
TAGACTTATTCAGATGAAAATGTTTACGACCAGTCACTTAAGATGTTTCA
TATCCTAATTACAACACCAATACAAGTTGCTATGTACAAGCAGAATTTTG
AGGAGATCCTCGAAAACGTCCAAGTGCAAATTTTGGGGCACTTCGAGGTG
ACGGAGGAGGAGCTTGAGGCAGCAACGGAGCTCTACAAGGACGACCCTGA
GGTCTCGGCATTGGTAGTGCAGTTGGAGGGCTTTTACCTGGGCGAGGGAG
GGGCCACTGGGGGGGAAGGTTTGGAGGGAGACATTGGTGTGGAAGAGCTG
GAGAAATTTATTGTGGAGGAATTTGGGGATGCATGGTGCGATGCATATGA
GAAGACGATGCGGGAATTCCAGGCTTTAGGCCGTGAACCTTCCGAGGCCG
ACCAGGAGGTGCTCCTTGACTTCCAGTCACAGGCATCAGTCCGCGCTCAG
GATAATCTTACCGACTTGCTCCAGAAATACGGATTGACGTCCACAGATTT
CCAACGATTAGTTTTGAAGCACCAGGCTGACCCCCGCATCAACCAAGCCT
TGCAGCACTCCCAGACGGTGCAAACCGAGGCACTGGCCAAAATGGGTCTA
CGCGTTTGATTGTGTGGCGTAGGTGTGGCAGGCAGAAAGACCGAAGGAAT
AAGAGAGAGTTACGATACACATGTCAAGCGAAGCGACAAGACAAGCACAC
ACGGGTTGCAAAACATCCTTACTTCCCGTCGTACACCACAAATAGAGAAA
GTAAAAAGAAA
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Coding sequence (CDS) from alignment at scaffold_6:641119..642779-

>mRNA_3555 ID=mRNA_3555|Name=jgi.p|Nanoce1779_2|582583|organism=Nannochloropsis oceanica|type=CDS|length=2394bp|location=Sequence derived from alignment at scaffold_6:641119..642779- (Nannochloropsis oceanica)
TTGCTATGTACAAGCAGAATTTTGAGGAGATCCTCGAAAACGTCCAAGTG
CAAATTTTGGGGCACTTCGAGGTGACGGAGGAGGAGCTTGAGGCAGCAAC
GGAGCTCTACAAGGACGACCCTGAGGTCTCGGCATTGGTAGTGCAGTTGG
AGGGCTTTTACCTGGGCGAGGGAGGGGCCACTGGGGGGGAAGGTTTGGAG
GGAGACATTGGTGTGGAAGAGCTGGAGAAATTTATTGTGGAGGAATTTGG
GGATGCATGGTGCGATGCATATGAGAAGACGATGCGGGAATTCCAGGCTT
TAGGCCGTGAACCTTCCGAGGCCGACCAGGAGGTGCTCCTTGACTTCCAG
TCACAGGCATCAGTCCGCGCTCAGGATAATCTTACCGACTTGCTCCAGAA
ATACGGATTGACGTCCACAGATTTCCAACGATTAGTTTTGAAGCACCAGG
CTGACCCCCGCATCAACCAAGCCTTGCAGCACTCCCAGACGGTGCAAACC
GAGGCACTGGCCAAAATGGGTCTACGCGTTTGAACGACGATGAGCCGGCA
CTGAGCAAGCGGAAGTTGATAAGTCTGTGGAGCATGTTAGTCAAAAACAT
GGAGCTGCACAAGTACCAGATCCAGCAGGTCTTGCACCAGCAGCGAGCCC
AACTTGCGCAACAAGGTACTGAGGTCCCTGACGAGCATATTGATGGCCCG
CGACTCACTACTGCTGTGGGGAGCTGGTCTTTCCACCGCCGCCCTCTTGT
ACTACATCGTCATAGGGCTTCCTGACGGGAGCGGCAAGGATGATGGAGTT
GCTATGTACAAGCAGAATTTTGAGGAGATCCTCGAAAACGTCCAAGTGCA
AATTTTGGGGCACTTCGAGGTGACGGAGGAGGAGCTTGAGGCAGCAACGG
AGCTCTACAAGGACGACCCTGAGGTCTCGGCATTGGTAGTGCAGTTGGAG
GGCTTTTACCTGGGCGAGGGAGGGGCCACTGGGGGGGAAGGTTTGGAGGG
AGACATTGGTGTGGAAGAGCTGGAGAAATTTATTGTGGAGGAATTTGGGG
ATGCATGGTGCGATGCATATGAGAAGACGATGCGGGAATTCCAGGCTTTA
GGCCGTGAACCTTCCGAGGCCGACCAGGAGGTGCTCCTTGACTTCCAGTC
ACAGGCATCAGTCCGCGCTCAGGATAATCTTACCGACTTGCTCCAGAAAT
ACGGATTGACGTCCACAGATTTCCAACGATTAGTTTTGAAGCACCAGGCT
GACCCCCGCATCAACCAAGCCTTGCAGCACTCCCAGACGGTGCAAACCGA
GGCACTGGCCAAAATGGGTCTACGCGTTTGAACGACGATGAGCCGGCACT
GAGCAAGCGGAAGTTGATAAGTCTGTGGAGCATGTTAGTCAAAAACATGG
AGCTGCACAAGTACCAGATCCAGCAGGTCTTGCACCAGCAGCGAGCCCAA
CTTGCGCAACAAGGTACTGAGGTCCCTGACGAGCATATTGATGGCCCGCG
ACTCACTACTGCTGTGGGGAGCTGGTCTTTCCACCGCCGCCCTCTTGTAC
TACATCGTCATAGGGCTTCCTGACGGGAGCGGCAAGGATGATGGAGTTGC
TATGTACAAGCAGAATTTTGAGGAGATCCTCGAAAACGTCCAAGTGCAAA
TTTTGGGGCACTTCGAGGTGACGGAGGAGGAGCTTGAGGCAGCAACGGAG
CTCTACAAGGACGACCCTGAGGTCTCGGCATTGGTAGTGCAGTTGGAGGG
CTTTTACCTGGGCGAGGGAGGGGCCACTGGGGGGGAAGGTTTGGAGGGAG
ACATTGGTGTGGAAGAGCTGGAGAAATTTATTGTGGAGGAATTTGGGGAT
GCATGGTGCGATGCATATGAGAAGACGATGCGGGAATTCCAGGCTTTAGG
CCGTGAACCTTCCGAGGCCGACCAGGAGGTGCTCCTTGACTTCCAGTCAC
AGGCATCAGTCCGCGCTCAGGATAATCTTACCGACTTGCTCCAGAAATAC
GGATTGACGTCCACAGATTTCCAACGATTAGTTTTGAAGCACCAGGCTGA
CCCCCGCATCAACCAAGCCTTGCAGCACTCCCAGACGGTGCAAACCGAGG
CACTGGCCAAAATGGGTCTACGCGTTTGAACGACGATGAGCCGGCACTGA
GCAAGCGGAAGTTGATAAGTCTGTGGAGCATGTTAGTCAAAAACATGGAG
CTGCACAAGTACCAGATCCAGCAGGTCTTGCACCAGCAGCGAGCCCAACT
TGCGCAACAAGGTACTGAGGTCCCTGACGAGCATATTGATGGCCCGCGAC
TCACTACTGCTGTGGGGAGCTGGTCTTTCCACCGCCGCCCTCTTGTACTA
CATCGTCATAGGGCTTCCTGACGGGAGCGGCAAGGATGATGGAG
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Synonyms
Publications