jgi.p|Nanoce1779_2|582566, mRNA_3549 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582566
Unique Name	mRNA_3549
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1463
Alignment location	scaffold_6:632744..634681 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582652
Track	FilteredModels2
ProteinId	582566

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:632744..634681 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582566	gene_3549	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582566	mRNA_3549-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3549	CDS_3549	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:632744..634681+
coding sequence from alignment at scaffold_6:632744..634681+

mRNA sequence

>mRNA_3549 ID=mRNA_3549|Name=jgi.p|Nanoce1779_2|582566|organism=Nannochloropsis oceanica|type=mRNA|length=1463bp
AAAAAACACAGCTCGCCGGCCTCGACGCCCACATAATCACCATCATAAAA
CATCATCAATGCGTCGTAGCCCTTCGGCAAAAAATCAGGGAGGCAGGGGA
GCAGCTTGGGGCGCTGACTCGAGCCGGGAAGGGTTAACCGAGGAAGAAAT
CGAGGAGATCCGTGAGGCGTTCAACCTGTTCGATTTGCAAGGAAGTGGGA
CAATTGATGTGCGGGAGCTTAAGCAGGCTATGCAGTCTCTGGGCTTTGAC
GCCAAGAACCACACCATCTACCAAATGATAGCTGACATGGACAAGGATGG
GACTGGAAGCGAGAGCAACAGCATTGACTTTGACGGGTTCCTACACATGA
TGACGACCAAGATGAGCGACAAGGAAAGCAAAGAGGATATTGAAAAGGTA
TTCAACATGTTTGACGAGCAGGGCAAGGGCTCCATCTCCTTCAAGGACCT
AAAGCGCGTCGCCAAGGAGCTGGGAGAGAACATGTCGGAGGCGGAGCTGA
AGGAGATGATCCTACGGGCGGACGCGGACCAAGACGGCGAGGTGTCTTTC
GAGGACTTTTACAATATCATGACCCGACGAACATTCACTTAATTTTAGCC
AAAAGGAAGGGGAAGGAAGGATGAAAAATGCTTCGTTCTCGGCTCTATTT
CCTGACGACGATTGAAGGAGGAAAAAGTTAAGCCTGGGAGATAAAAATTG
AATAGTCGCGCATGCATTCTCCCAAGAGAGAAGCATTGGGGGGGTGTAGC
ACTTGTGCTGGTATGAAGAGGACAATAATGTAGGGTAGTGGCATTTGGAA
GAGAGCAAAAAGACGAAGGAGTGATCGAAAGCAAGAAAGCCAGCGAAGTC
AGTCAAGAAAGGAATTGTGAGTCGATCTTTCCATCCATCCCATGATTTGT
CCCTCTACCCCATGTGCTGAACAACGTCCTGCGTGGGCTCTCTTCGTGGC
CTTTCCCCCTTTCCCGCCGCGCTCCCCTTGCCTCTTCCACCTTTCGTCCA
CCACACGCGTCTCCTTCCTATTTATGAGACGCAGCACTGGACGAAGGAAA
GACGTAAGGGTTGATGAAGGCAAGAGCCAGGGACTGGTACTGATGCAAAT
CCGATGTGGCTTTCTCTATCTAGCCGTCCAATCCATGACATGACACATCA
AAAGTGTGGGTGGCAAGCGCACATCCAGACAATGTATTCGGAAGCTGACT
TTTGTTCTAATCACACCCAATACATGCACGCAAACACAGACAGAACAAAA
ACACACACCACAACATAGAGTCACGCACACTCACGAAGACACACGATTGC
TTGATTCACATGCCGTGTCCAAAGCGCGAAGCTCCCTCCACGAAATTTCT
TCCTCCCTTTCAACTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCCCTC
TCTGTCTCTGTCTCTCTCCCTCTCCCTCTCTCTCTCCCTCCCTCCCTTTA
TCTCATCCACTTC

protein sequence of jgi.p|Nanoce1779_2|582566

>mRNA_3549-protein ID=mRNA_3549-protein|Name=jgi.p|Nanoce1779_2|582566|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MRRSPSAKNQGGRGAAWGADSSREGLTEEEIEEIREAFNLFDLQGSGTID
VRELKQAMQSLGFDAKNHTIYQMIADMDKDGTGSESNSIDFDGFLHMMTT
KMSDKESKEDIEKVFNMFDEQGKGSISFKDLKRVAKELGENMSEAELKEM
ILRADADQDGEVSFEDFYNIMTRRTFT*

mRNA from alignment at scaffold_6:632744..634681+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3549 ID=mRNA_3549|Name=jgi.p|Nanoce1779_2|582566|organism=Nannochloropsis oceanica|type=mRNA|length=1938bp|location=Sequence derived from alignment at scaffold_6:632744..634681+ (Nannochloropsis oceanica)
AAAAAACACAGCTCGCCGGCCTCGACGCCCACATAATCACCATCATAAAA
CATCATCAATGGTAAGTCCATCTATTCGCCCTCCATCCCCCGCCGTACGC
GTCAATACATGCACACCACCACACACCACAGCGTCGTAGCCCTTCGGCAA
AAAATCAGGGAGGCAGGGGAGCAGCTTGGGGCGCTGACTCGAGCCGGGAA
GGGTTAACCGAGGAAGAAATCGAGGGTACTTCGGGATGGAAGGGAGGGGA
GAACCGATTGGCTTGCCTGCAGAAATAAATGAAGCGCGAGCCTTAAGCTG
AGGAGAGGGTGTTTTGACTGAATTCAGGAGGGCCTTTTGAGTTCGAACTT
GTCCATACTTCGGATCGGCTATGCGGTCGTGCCTGATTTTCCTCCCCTAT
CTCGCCATCCCATCCAGACCCATGTACTGAACATAACCCCGCCTTACTAT
CTTCCATGCACAGAGATCCGTGAGGCGTTCAACCTGTTCGATTTGCAAGG
AAGTGGGACAATTGATGTGCGGGAGCTTAAGCAGGCTATGCAGTCTCTGG
GCTTTGACGCCAAGAACCACACCATCTACCAAATGATAGCTGACATGGAC
AAGGATGGGACTGGAAGCGAGAGCAACAGCATTGACTTTGACGGGTTCCT
ACACATGATGACGACCAAGATGAGCGACAAGGAAAGCAAAGAGGATATTG
AAAAGGTATTCAACATGTTTGACGAGCAGGGCAAGGGCTCCATCTCCTTC
AAGGACCTAAAGCGCGTCGCCAAGGAGCTGGGAGAGAACATGTCGGGTAC
GTTTGCGTGTGAATGTGTGTGCGTACGATTCGTTTGACCACTTCTTAATA
ATCATATTAGACTGTCATTATGTATAAATTAATTGGATCTGAGAGAAAGC
CGGTCCCTTCTTTCGACCCACCAAAGCCTCCTTTCTTCCCTCTTGCCTAT
ACTCACACAACAGAGGCGGAGCTGAAGGAGATGATCCTACGGGCGGACGC
GGACCAAGACGGCGAGGTGTCTTTCGAGGACTTTTACAATATCATGACCC
GACGAACATTCACTTAATTTTAGCCAAAAGGAAGGGGAAGGAAGGATGAA
AAATGCTTCGTTCTCGGCTCTATTTCCTGACGACGATTGAAGGAGGAAAA
AGTTAAGCCTGGGAGATAAAAATTGAATAGTCGCGCATGCATTCTCCCAA
GAGAGAAGCATTGGGGGGGTGTAGCACTTGTGCTGGTATGAAGAGGACAA
TAATGTAGGGTAGTGGCATTTGGAAGAGAGCAAAAAGACGAAGGAGTGAT
CGAAAGCAAGAAAGCCAGCGAAGTCAGTCAAGAAAGGAATTGTGAGTCGA
TCTTTCCATCCATCCCATGATTTGTCCCTCTACCCCATGTGCTGAACAAC
GTCCTGCGTGGGCTCTCTTCGTGGCCTTTCCCCCTTTCCCGCCGCGCTCC
CCTTGCCTCTTCCACCTTTCGTCCACCACACGCGTCTCCTTCCTATTTAT
GAGACGCAGCACTGGACGAAGGAAAGACGTAAGGGTTGATGAAGGCAAGA
GCCAGGGACTGGTACTGATGCAAATCCGATGTGGCTTTCTCTATCTAGCC
GTCCAATCCATGACATGACACATCAAAAGTGTGGGTGGCAAGCGCACATC
CAGACAATGTATTCGGAAGCTGACTTTTGTTCTAATCACACCCAATACAT
GCACGCAAACACAGACAGAACAAAAACACACACCACAACATAGAGTCACG
CACACTCACGAAGACACACGATTGCTTGATTCACATGCCGTGTCCAAAGC
GCGAAGCTCCCTCCACGAAATTTCTTCCTCCCTTTCAACTCTCTCTCTCT
CTCTCTCTGTCTCTCTCTCTCCCTCTCTGTCTCTGTCTCTCTCCCTCTCC
CTCTCTCTCTCCCTCCCTCCCTTTATCTCATCCACTTC

Coding sequence (CDS) from alignment at scaffold_6:632744..634681+

>mRNA_3549 ID=mRNA_3549|Name=jgi.p|Nanoce1779_2|582566|organism=Nannochloropsis oceanica|type=CDS|length=2136bp|location=Sequence derived from alignment at scaffold_6:632744..634681+ (Nannochloropsis oceanica)
ATGCGTCGTAGCCCTTCGGCAAAAAATCAGGGAGGCAGGGGAGCAGCTTG
GGGCGCTGACTCGAGCCGGGAAGGGTTAACCGAGGAAGAAATCGAGGAGA
TCCGTGAGGCGTTCAACCTGTTCGATTTGCAAGGAAGTGGGACAATTGAT
GTGCGGGAGCTTAAGCAGGCTATGCAGTCTCTGGGCTTTGACGCCAAGAA
CCACACCATCTACCAAATGATAGCTGACATGGACAAGGATGGGACTGGAA
GCGAGAGCAACAGCATTGACTTTGACGGGTTCCTACACATGATGACGACC
AAGATGAGCGACAAGGAAAGCAAAGAGGATATTGAAAAGGTATTCAACAT
GTTTGACGAGCAGGGCAAGGGCTCCATCTCCTTCAAGGACCTAAAGCGCG
TCGCCAAGGAGCTGGGAGAGAACATGTCGGAGGCGGAGCTGAAGGAGATG
ATCCTACGGGCGGACGCGGACCAAGACGGCGAGGTGTCTTTCGAGGACTT
TTACAATATCATGACCCGACGAACATTCACTTAAATGCGTCGTAGCCCTT
CGGCAAAAAATCAGGGAGGCAGGGGAGCAGCTTGGGGCGCTGACTCGAGC
CGGGAAGGGTTAACCGAGGAAGAAATCGAGGAGATCCGTGAGGCGTTCAA
CCTGTTCGATTTGCAAGGAAGTGGGACAATTGATGTGCGGGAGCTTAAGC
AGGCTATGCAGTCTCTGGGCTTTGACGCCAAGAACCACACCATCTACCAA
ATGATAGCTGACATGGACAAGGATGGGACTGGAAGCGAGAGCAACAGCAT
TGACTTTGACGGGTTCCTACACATGATGACGACCAAGATGAGCGACAAGG
AAAGCAAAGAGGATATTGAAAAGGTATTCAACATGTTTGACGAGCAGGGC
AAGGGCTCCATCTCCTTCAAGGACCTAAAGCGCGTCGCCAAGGAGCTGGG
AGAGAACATGTCGGAGGCGGAGCTGAAGGAGATGATCCTACGGGCGGACG
CGGACCAAGACGGCGAGGTGTCTTTCGAGGACTTTTACAATATCATGACC
CGACGAACATTCACTTAAATGCGTCGTAGCCCTTCGGCAAAAAATCAGGG
AGGCAGGGGAGCAGCTTGGGGCGCTGACTCGAGCCGGGAAGGGTTAACCG
AGGAAGAAATCGAGGAGATCCGTGAGGCGTTCAACCTGTTCGATTTGCAA
GGAAGTGGGACAATTGATGTGCGGGAGCTTAAGCAGGCTATGCAGTCTCT
GGGCTTTGACGCCAAGAACCACACCATCTACCAAATGATAGCTGACATGG
ACAAGGATGGGACTGGAAGCGAGAGCAACAGCATTGACTTTGACGGGTTC
CTACACATGATGACGACCAAGATGAGCGACAAGGAAAGCAAAGAGGATAT
TGAAAAGGTATTCAACATGTTTGACGAGCAGGGCAAGGGCTCCATCTCCT
TCAAGGACCTAAAGCGCGTCGCCAAGGAGCTGGGAGAGAACATGTCGGAG
GCGGAGCTGAAGGAGATGATCCTACGGGCGGACGCGGACCAAGACGGCGA
GGTGTCTTTCGAGGACTTTTACAATATCATGACCCGACGAACATTCACTT
AAATGCGTCGTAGCCCTTCGGCAAAAAATCAGGGAGGCAGGGGAGCAGCT
TGGGGCGCTGACTCGAGCCGGGAAGGGTTAACCGAGGAAGAAATCGAGGA
GATCCGTGAGGCGTTCAACCTGTTCGATTTGCAAGGAAGTGGGACAATTG
ATGTGCGGGAGCTTAAGCAGGCTATGCAGTCTCTGGGCTTTGACGCCAAG
AACCACACCATCTACCAAATGATAGCTGACATGGACAAGGATGGGACTGG
AAGCGAGAGCAACAGCATTGACTTTGACGGGTTCCTACACATGATGACGA
CCAAGATGAGCGACAAGGAAAGCAAAGAGGATATTGAAAAGGTATTCAAC
ATGTTTGACGAGCAGGGCAAGGGCTCCATCTCCTTCAAGGACCTAAAGCG
CGTCGCCAAGGAGCTGGGAGAGAACATGTCGGAGGCGGAGCTGAAGGAGA
TGATCCTACGGGCGGACGCGGACCAAGACGGCGAGGTGTCTTTCGAGGAC
TTTTACAATATCATGACCCGACGAACATTCACTTAA

Synonyms

Publications