jgi.p|Nanoce1779_2|582538, mRNA_3544 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582538
Unique Name	mRNA_3544
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1330
Alignment location	scaffold_6:617922..619758 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582624
Track	FilteredModels2
ProteinId	582538

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:617922..619758 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582538	gene_3544	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582538	mRNA_3544-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3544	CDS_3544	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:617922..619758+
coding sequence from alignment at scaffold_6:617922..619758+

mRNA sequence

>mRNA_3544 ID=mRNA_3544|Name=jgi.p|Nanoce1779_2|582538|organism=Nannochloropsis oceanica|type=mRNA|length=1330bp
CTCGGGGGCTCTTGAGATGCTTTTTAGGCCTAAGCAGGAATGGGAACAGC
GGTGGGAAGCCTCAGTCGCCGCCGGTGGAGGAGCAGGACGTGAACGGTGT
TGGGTCTACAAGCACTACCATGCGCCGACGGGAGTTTGTGGTGACGCCGC
ACCACCACGGTAACAGCCATTTGGAGGGCTTGTTAAATCTGGCAGGGCGG
GAGAAGGAGGAGTTTGCGGGCGCACTGGTGAAGTTAGAGCATCACATGCA
GCTGGAGGTAGCCGAGGCGCTCATCTTCAACATTCGTAAATACACCAACG
GTGGGATGCTCCCGTCTGCGGACGGCTCGCTACCCAAGCTCAGGCCAGAT
CAGCAGGAGGTAGTGACAGAATTTATTCCTGAGGTGATGCGGATCATGGA
TAGGTTGGAGCAGCAAGGCCACCACCACCGGGACGCCCGCGTGGCACTCT
ATGCGACCGAGGCGCTAAGTTATGAGGTGTCGACTAAGAATGTCGTCAAA
GCTGCACCTCAACTAGCCCGCATCTTCAAGAACATCGACATGATGGTGGC
CAAACACCCTGAGCTAAAGGGCGGCGCCCCCTTCATCATCCAAGGCATGA
TGTTTCTCAATGCCCCTATACCCGTCCGCAGCGTCAAGAAGGCCAAAGAG
TGTTTCCAGTCCGCGCATAGGATCGACGCCACCAGCCCGCGCAACAACTA
CTTTTGCGGTGTGACGGCCTATTTAGAAAAAGATTACACAGAAGCTCACA
CTTACTTTGCGGAATCCCTGCGTCTAGCCCAGGAGGCGGCCGCGATTGCT
AGCGCTGTACGGAAAGGCGTCGCTCTTTCCGGTGATGGGGGAGGAGAACG
AGGAGGAGGATGTGCAGAAGCAGAAAATCCGGCAAATAAAGAGATGCCAA
TGGACGAGTACTTGCATGTGCAATGCCGGTTGGGCATGGACCTGGCTAGC
AGTCGGATCAAGTAGAAGAAGATGTGATGATGGCGGGGTTTATTTCTTTG
TAAATATTATAGCGCGGGATGCGAAACCAGAGAGGGTGAATGAAGAAGTG
AGTGAGCGTAAATAAGTGAATGACATGACTAGGATAGTCACCGGGTGCTG
GTGTCTGTATTGTAGGCCCCCCCCCCTCCTCCCTTGCTTGTCCTGTTGCA
AATTTGATGTCTCGGGAGACAAGAGCAAACAAATAAAGATAGGAGGGACG
GAATGAGGAAGGGGGATTGCTTCGACGCCTTATTTGAGTCACCTTTGGCT
GTTGTAAAAAGGAGAGCACATGGAGTGTAAAAGAAGATCAACACTCAATA
AAGAAAGCTTCCAAGAAATTAAAACGACGC

protein sequence of jgi.p|Nanoce1779_2|582538

>mRNA_3544-protein ID=mRNA_3544-protein|Name=jgi.p|Nanoce1779_2|582538|organism=Nannochloropsis oceanica|type=polypeptide|length=282bp
MRRREFVVTPHHHGNSHLEGLLNLAGREKEEFAGALVKLEHHMQLEVAEA
LIFNIRKYTNGGMLPSADGSLPKLRPDQQEVVTEFIPEVMRIMDRLEQQG
HHHRDARVALYATEALSYEVSTKNVVKAAPQLARIFKNIDMMVAKHPELK
GGAPFIIQGMMFLNAPIPVRSVKKAKECFQSAHRIDATSPRNNYFCGVTA
YLEKDYTEAHTYFAESLRLAQEAAAIASAVRKGVALSGDGGGERGGGCAE
AENPANKEMPMDEYLHVQCRLGMDLASSRIK*

mRNA from alignment at scaffold_6:617922..619758+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3544 ID=mRNA_3544|Name=jgi.p|Nanoce1779_2|582538|organism=Nannochloropsis oceanica|type=mRNA|length=1837bp|location=Sequence derived from alignment at scaffold_6:617922..619758+ (Nannochloropsis oceanica)
CTCGGGGGCTCTTGAGATGCTTTTTAGGCCTAAGCAGGAATGGGAACAGC
GGTGGGAAGCCTCAGTCGCCGCCGGTGGAGGAGCAGGACGTGAACGGTGT
TGGGTCTACAAGCACTACCATGCGCCGACGGGAGTTTGTGGTGACGCCGC
ACCACCACGGTAACAGCCATTTGGAGGGCTTGTTAAATCTGGCAGGGCGG
GAGAAGGAGGAGTTTGCGGGCGCACTGGTGAAGTTAGAGCATCACATGCA
GCTGGAGGTAGCCGAGGCGCTCATCTTCAACATTCGGTGCGTACCTTTTT
GGGAGGGCAGGAAGTTCGGGGAGTGTTCTAGTAGAGGGAGATATGTTCAT
GGTTGGCAGCGACAAGCTCCACCTTATTTATTGGCCTTTATATCCTCCTA
TCATCAATGAGGTCCGTCTTCTGTTTCTTAGTCCTTTCTCTCCCTCCCCT
CCCACCCACTCACAGTAAATACACCAACGGTGGGATGCTCCCGTCTGCGG
ACGGCTCGCTACCCAAGCTCAGGCCAGATCAGCAGGAGGTAGTGACAGAA
TTTATTCCTGAGGTGATGCGGATCATGGATAGGTTGGAGCAGCAAGGCCA
CCACCACCGGGACGCCCGCGTGGCACTCTATGCGACCGAGGCGCTAAGTT
ATGAGGTGTCGACTAAGAATGTCGTCAAAGCTGCACGTACGTCAGGGGAT
GACCTGAGACTTTGAATAAAGAGCATCGCCTGACCGAGAGCAGCCAGTTT
TACCCAGTTGTCTGCCCTATGTATCCTTTGTGTCGTCGGCACTTCCTCAT
CGTCCCCTTTTTCAGTTTCTCTTGCTCACGCTTTTTTTTAAATCCCCCCT
AACCTCCTGAAAGCTCAACTAGCCCGCATCTTCAAGAACATCGACATGAT
GGTGGCCAAACACCCTGAGCTAAAGGGCGGCGCCCCCTTCATCATCCAAG
GCATGATGTTTCTCAATGCCCCTATACCCGTCCGCAGCGTCAAGAAGGCC
AAAGAGTGTTTCCAGTCCGCGCATAGGGTGCGTTCAAGGAAGGAAATATC
ATGACATTTTGACTTGGTTGATGAAAATCCATGCTGCAGTCTGACTTGGT
TGATTCTAGATTTTTTATTTTTTAACCCCTTCCTCCTTTTCTCCCTCATT
CCCTCCCTCCCTCCTCTCACACAAACAGATCGACGCCACCAGCCCGCGCA
ACAACTACTTTTGCGGTGTGACGGCCTATTTAGAAAAAGATTACACAGAA
GCTCACACTTACTTTGCGGAATCCCTGCGTCTAGCCCAGGAGGCGGCCGC
GATTGCTAGCGCTGTACGGAAAGGCGTCGCTCTTTCCGGTGATGGGGGAG
GAGAACGAGGAGGAGGATGTGCAGAAGCAGAAAATCCGGCAAATAAAGAG
ATGCCAATGGACGAGTACTTGCATGTGCAATGCCGGTTGGGCATGGACCT
GGCTAGCAGTCGGATCAAGTAGAAGAAGATGTGATGATGGCGGGGTTTAT
TTCTTTGTAAATATTATAGCGCGGGATGCGAAACCAGAGAGGGTGAATGA
AGAAGTGAGTGAGCGTAAATAAGTGAATGACATGACTAGGATAGTCACCG
GGTGCTGGTGTCTGTATTGTAGGCCCCCCCCCCTCCTCCCTTGCTTGTCC
TGTTGCAAATTTGATGTCTCGGGAGACAAGAGCAAACAAATAAAGATAGG
AGGGACGGAATGAGGAAGGGGGATTGCTTCGACGCCTTATTTGAGTCACC
TTTGGCTGTTGTAAAAAGGAGAGCACATGGAGTGTAAAAGAAGATCAACA
CTCAATAAAGAAAGCTTCCAAGAAATTAAAACGACGC

Coding sequence (CDS) from alignment at scaffold_6:617922..619758+

>mRNA_3544 ID=mRNA_3544|Name=jgi.p|Nanoce1779_2|582538|organism=Nannochloropsis oceanica|type=CDS|length=3384bp|location=Sequence derived from alignment at scaffold_6:617922..619758+ (Nannochloropsis oceanica)
ATGCGCCGACGGGAGTTTGTGGTGACGCCGCACCACCACGGTAACAGCCA
TTTGGAGGGCTTGTTAAATCTGGCAGGGCGGGAGAAGGAGGAGTTTGCGG
GCGCACTGGTGAAGTTAGAGCATCACATGCAGCTGGAGGTAGCCGAGGCG
CTCATCTTCAACATTCGTAAATACACCAACGGTGGGATGCTCCCGTCTGC
GGACGGCTCGCTACCCAAGCTCAGGCCAGATCAGCAGGAGGTAGTGACAG
AATTTATTCCTGAGGTGATGCGGATCATGGATAGGTTGGAGCAGCAAGGC
CACCACCACCGGGACGCCCGCGTGGCACTCTATGCGACCGAGGCGCTAAG
TTATGAGGTGTCGACTAAGAATGTCGTCAAAGCTGCACCTCAACTAGCCC
GCATCTTCAAGAACATCGACATGATGGTGGCCAAACACCCTGAGCTAAAG
GGCGGCGCCCCCTTCATCATCCAAGGCATGATGTTTCTCAATGCCCCTAT
ACCCGTCCGCAGCGTCAAGAAGGCCAAAGAGTGTTTCCAGTCCGCGCATA
GGATCGACGCCACCAGCCCGCGCAACAACTACTTTTGCGGTGTGACGGCC
TATTTAGAAAAAGATTACACAGAAGCTCACACTTACTTTGCGGAATCCCT
GCGTCTAGCCCAGGAGGCGGCCGCGATTGCTAGCGCTGTACGGAAAGGCG
TCGCTCTTTCCGGTGATGGGGGAGGAGAACGAGGAGGAGGATGTGCAGAA
GCAGAAAATCCGGCAAATAAAGAGATGCCAATGGACGAGTACTTGCATGT
GCAATGCCGGTTGGGCATGGACCTGGCTAGCAGTCGGATCAAGTAGATGC
GCCGACGGGAGTTTGTGGTGACGCCGCACCACCACGGTAACAGCCATTTG
GAGGGCTTGTTAAATCTGGCAGGGCGGGAGAAGGAGGAGTTTGCGGGCGC
ACTGGTGAAGTTAGAGCATCACATGCAGCTGGAGGTAGCCGAGGCGCTCA
TCTTCAACATTCGTAAATACACCAACGGTGGGATGCTCCCGTCTGCGGAC
GGCTCGCTACCCAAGCTCAGGCCAGATCAGCAGGAGGTAGTGACAGAATT
TATTCCTGAGGTGATGCGGATCATGGATAGGTTGGAGCAGCAAGGCCACC
ACCACCGGGACGCCCGCGTGGCACTCTATGCGACCGAGGCGCTAAGTTAT
GAGGTGTCGACTAAGAATGTCGTCAAAGCTGCACCTCAACTAGCCCGCAT
CTTCAAGAACATCGACATGATGGTGGCCAAACACCCTGAGCTAAAGGGCG
GCGCCCCCTTCATCATCCAAGGCATGATGTTTCTCAATGCCCCTATACCC
GTCCGCAGCGTCAAGAAGGCCAAAGAGTGTTTCCAGTCCGCGCATAGGAT
CGACGCCACCAGCCCGCGCAACAACTACTTTTGCGGTGTGACGGCCTATT
TAGAAAAAGATTACACAGAAGCTCACACTTACTTTGCGGAATCCCTGCGT
CTAGCCCAGGAGGCGGCCGCGATTGCTAGCGCTGTACGGAAAGGCGTCGC
TCTTTCCGGTGATGGGGGAGGAGAACGAGGAGGAGGATGTGCAGAAGCAG
AAAATCCGGCAAATAAAGAGATGCCAATGGACGAGTACTTGCATGTGCAA
TGCCGGTTGGGCATGGACCTGGCTAGCAGTCGGATCAAGTAGATGCGCCG
ACGGGAGTTTGTGGTGACGCCGCACCACCACGGTAACAGCCATTTGGAGG
GCTTGTTAAATCTGGCAGGGCGGGAGAAGGAGGAGTTTGCGGGCGCACTG
GTGAAGTTAGAGCATCACATGCAGCTGGAGGTAGCCGAGGCGCTCATCTT
CAACATTCGTAAATACACCAACGGTGGGATGCTCCCGTCTGCGGACGGCT
CGCTACCCAAGCTCAGGCCAGATCAGCAGGAGGTAGTGACAGAATTTATT
CCTGAGGTGATGCGGATCATGGATAGGTTGGAGCAGCAAGGCCACCACCA
CCGGGACGCCCGCGTGGCACTCTATGCGACCGAGGCGCTAAGTTATGAGG
TGTCGACTAAGAATGTCGTCAAAGCTGCACCTCAACTAGCCCGCATCTTC
AAGAACATCGACATGATGGTGGCCAAACACCCTGAGCTAAAGGGCGGCGC
CCCCTTCATCATCCAAGGCATGATGTTTCTCAATGCCCCTATACCCGTCC
GCAGCGTCAAGAAGGCCAAAGAGTGTTTCCAGTCCGCGCATAGGATCGAC
GCCACCAGCCCGCGCAACAACTACTTTTGCGGTGTGACGGCCTATTTAGA
AAAAGATTACACAGAAGCTCACACTTACTTTGCGGAATCCCTGCGTCTAG
CCCAGGAGGCGGCCGCGATTGCTAGCGCTGTACGGAAAGGCGTCGCTCTT
TCCGGTGATGGGGGAGGAGAACGAGGAGGAGGATGTGCAGAAGCAGAAAA
TCCGGCAAATAAAGAGATGCCAATGGACGAGTACTTGCATGTGCAATGCC
GGTTGGGCATGGACCTGGCTAGCAGTCGGATCAAGTAGATGCGCCGACGG
GAGTTTGTGGTGACGCCGCACCACCACGGTAACAGCCATTTGGAGGGCTT
GTTAAATCTGGCAGGGCGGGAGAAGGAGGAGTTTGCGGGCGCACTGGTGA
AGTTAGAGCATCACATGCAGCTGGAGGTAGCCGAGGCGCTCATCTTCAAC
ATTCGTAAATACACCAACGGTGGGATGCTCCCGTCTGCGGACGGCTCGCT
ACCCAAGCTCAGGCCAGATCAGCAGGAGGTAGTGACAGAATTTATTCCTG
AGGTGATGCGGATCATGGATAGGTTGGAGCAGCAAGGCCACCACCACCGG
GACGCCCGCGTGGCACTCTATGCGACCGAGGCGCTAAGTTATGAGGTGTC
GACTAAGAATGTCGTCAAAGCTGCACCTCAACTAGCCCGCATCTTCAAGA
ACATCGACATGATGGTGGCCAAACACCCTGAGCTAAAGGGCGGCGCCCCC
TTCATCATCCAAGGCATGATGTTTCTCAATGCCCCTATACCCGTCCGCAG
CGTCAAGAAGGCCAAAGAGTGTTTCCAGTCCGCGCATAGGATCGACGCCA
CCAGCCCGCGCAACAACTACTTTTGCGGTGTGACGGCCTATTTAGAAAAA
GATTACACAGAAGCTCACACTTACTTTGCGGAATCCCTGCGTCTAGCCCA
GGAGGCGGCCGCGATTGCTAGCGCTGTACGGAAAGGCGTCGCTCTTTCCG
GTGATGGGGGAGGAGAACGAGGAGGAGGATGTGCAGAAGCAGAAAATCCG
GCAAATAAAGAGATGCCAATGGACGAGTACTTGCATGTGCAATGCCGGTT
GGGCATGGACCTGGCTAGCAGTCGGATCAAGTAG

Synonyms

Publications