jgi.p|Nanoce1779_2|582530, mRNA_3542 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582530
Unique Name	mRNA_3542
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1262
Alignment location	scaffold_6:610869..612810 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582616
Track	FilteredModels2
ProteinId	582530

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:610869..612810 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582530	gene_3542	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582530	mRNA_3542-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3542	CDS_3542	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:610869..612810+
coding sequence from alignment at scaffold_6:610869..612810+

mRNA sequence

>mRNA_3542 ID=mRNA_3542|Name=jgi.p|Nanoce1779_2|582530|organism=Nannochloropsis oceanica|type=mRNA|length=1262bp
ACAGGAAGAGAACATCTTTGAGCTTCAAGGCCGTATCTGCCTCCTAACCA
TGAACGCGGAATACGACTATCTCTTCAAGCTCCTGCTGATTGGAGACTCA
GGTGTAGGAAAGTCCTGTTTGCTGTTGCGCTTTGCGGACGACACATACAC
AGAAAGCTACATTTCCACCATCGGTGTCGATTTCAAAATCCGCACCATTG
AGCTGGAGGGGAAGACTATTAAGTTGCAGATTTGGGATACGGCCGGGCAG
GAGCGTTTCCGCACCATCACTTCCTCCTACTACAGAGGCGCACACGGCAT
CATCGTGGTCTACGATGTGACTGACCAGGAGTCATTCAACAACGTGAAGC
AGTGGCTCCACGAGATTAATCGCTACGCCTCCGAGAATGTCAACAAGCTC
CTCGTCGGCAACAAGAGCGATCTGGAACCCAAGCGCGTGGTCTCCACGGA
AGCCGCCAAGGAATTTGCTGACTCCTTAGGGATCGCCTTCCTTGAGACCT
CCGCCAAAAACTCAACCAATGTCGAAAAGGCCTTCCTGACCATGGCCTCT
CAAATCAAAGCACGGATGAAGACCCAACCGGTGGGCCCCAAAACGGGGGG
GACAAAGCTGACGCCCTCCACAGCGGTGGGCGGGCCGGGTGCGTCGTCGG
GGTGCTGCTAGACTGGGAGGGAGAGAGGAGGGGAGAGACGGTTCGGTGAA
AATGAAAACAAGGAAAAAGGAGGATCGAAAAGAGAGAGGGAATGAAGAAA
AATTGACCTTGTAGGAGTGGGGGAAGAGACAGAGAGAAAGTGGCCGTCTT
TGCATTGAAGAGAGAGGCGTCCCGATCGTGGCACCCTTTCCATCTTCCCC
TTTCCCCTTCTAGTGCGTGGTTCCTCGTGTGGGGGCCGTACTGACGATTA
AAGGGAATAACATTAATCTTCTTCTCTGTTCGCACATTCGGCCGAAAATA
AACAGACACACGTGCACACTTGTAAAAACAGAAAGACATGTTCCCCGCAC
CCTCAGAGCCCCCCCCAAAAAACAAAAGGAAGGTGGAAGAAAATACCCGG
GGGGGAGGACGCGACGCAACGCAATGGTAGGAGACAAAAGTCAGGGAGGC
CCGGGGGATAGTGGGGGAAAGGGCACCCGGGCATGGACATGTTTTTTGGT
ACCTCCATCCACACTCTCTTGACCTCTCTTCCCGCCGGGATGAAACAACA
GGAGAGGGAGGGAAAAAATAGAAAATTAAAAAAAAAAGGTACGACTACCT
CAAACCACAAAA

protein sequence of jgi.p|Nanoce1779_2|582530

>mRNA_3542-protein ID=mRNA_3542-protein|Name=jgi.p|Nanoce1779_2|582530|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MNAEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI
ELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK
QWLHEINRYASENVNKLLVGNKSDLEPKRVVSTEAAKEFADSLGIAFLET
SAKNSTNVEKAFLTMASQIKARMKTQPVGPKTGGTKLTPSTAVGGPGASS
GCC*

mRNA from alignment at scaffold_6:610869..612810+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3542 ID=mRNA_3542|Name=jgi.p|Nanoce1779_2|582530|organism=Nannochloropsis oceanica|type=mRNA|length=1942bp|location=Sequence derived from alignment at scaffold_6:610869..612810+ (Nannochloropsis oceanica)
ACAGGAAGAGAACATCTTTGAGCTTCAAGGCCGTATCTGCCTCCTAACCA
TGAACGCGGAATAGTAAGTGCATTGCTTGACCCCTACTTCTTCCCGCCCG
TTCTTCGAGACACCTACTCATCGCCCCCTTTTTCTTTTCTCATTACAGCG
ACTATCTCTTCAAGCTCCTGCTGATTGGAGACTCAGGTGTAGGAAAGTCC
TGTTTGCTGTTGCGCTTTGCGGACGACACATACACAGAAAGCTACATTTC
CACCATCGGTGTCGATTTCGTGAGTGCGGGGAAGGGGTTGGGTGTTTGGG
GTGGATGGGGTAGGACAAGCTTGTTCAAATTGTTGACATAGCATGCTCCA
TAAGATGCTTCGTGAAGACGATTGAAGTGTTTGCCTGGCCACAACCGGCT
TGCCTCGGTTTTATGTATCGGGGTGGATCATGTGCCGTTGTGCTTCAAGC
TCTTCGTCACACCTTCTTTCTCATGCCTTTGTATCTCTCCACCTTTACTC
TTTTTGCAGAAAATCCGCACCATTGAGCTGGAGGGGAAGACTATTAAGTT
GCAGATTGTACGTCCAAGGGGGGTTGGGGGTGGGAGGTCTGAAAAGGGAG
AAGGGAGATTTGGAAGGAAGTGTGTTTGTTTAATATACGATGATTTGTCT
CCATGCGCTTACTTTAAATAAATCTTATCTTCAAAATCATAAGCTGCACA
TAGTAACCCCTCTTACTTTCTCTTACCCTCTCCTGCACTCATTGCTCCTC
CCTTTTCTCTTACTCCTGCTTTTTAATCAGTGGGATACGGCCGGGCAGGA
GCGTTTCCGCACCATCACTTCCTCCTACTACAGAGGCGCACACGGCATCA
TCGTGGTCTACGATGTGACTGACCAGGTAATATACAAATATAAAATTTAA
AGAAGATTAGACAAAGAAGCGTGCAGTTTTGTGTGGTACTGGTGCTTACA
TCTATTGTCTCCCTGCCTCCATCCTTCCCCCCTTTCCCCCCCATGCGCCT
GTGCGTAGGAGTCATTCAACAACGTGAAGCAGTGGCTCCACGAGATTAAT
CGCTACGCCTCCGAGAATGTCAACAAGCTCCTCGTCGGCAACAAGAGCGA
TCTGGAACCCAAGCGCGTGGTCTCCACGGAAGCCGCCAAGGAATTTGCTG
ACTCCTTAGGGATCGCCTTCCTTGAGACCTCCGCCAAAAACTCAACCAAT
GTCGAAAAGGCCTTCCTGACCATGGCCTCTCAAATCAAAGCACGGATGAA
GACCCAACCGGTGGGCCCCAAAACGGGGGGGACAAAGCTGACGCCCTCCA
CAGCGGTGGGCGGGCCGGGTGCGTCGTCGGGGTGCTGCTAGACTGGGAGG
GAGAGAGGAGGGGAGAGACGGTTCGGTGAAAATGAAAACAAGGAAAAAGG
AGGATCGAAAAGAGAGAGGGAATGAAGAAAAATTGACCTTGTAGGAGTGG
GGGAAGAGACAGAGAGAAAGTGGCCGTCTTTGCATTGAAGAGAGAGGCGT
CCCGATCGTGGCACCCTTTCCATCTTCCCCTTTCCCCTTCTAGTGCGTGG
TTCCTCGTGTGGGGGCCGTACTGACGATTAAAGGGAATAACATTAATCTT
CTTCTCTGTTCGCACATTCGGCCGAAAATAAACAGACACACGTGCACACT
TGTAAAAACAGAAAGACATGTTCCCCGCACCCTCAGAGCCCCCCCCAAAA
AACAAAAGGAAGGTGGAAGAAAATACCCGGGGGGGAGGACGCGACGCAAC
GCAATGGTAGGAGACAAAAGTCAGGGAGGCCCGGGGGATAGTGGGGGAAA
GGGCACCCGGGCATGGACATGTTTTTTGGTACCTCCATCCACACTCTCTT
GACCTCTCTTCCCGCCGGGATGAAACAACAGGAGAGGGAGGGAAAAAATA
GAAAATTAAAAAAAAAAGGTACGACTACCTCAAACCACAAAA

Coding sequence (CDS) from alignment at scaffold_6:610869..612810+

>mRNA_3542 ID=mRNA_3542|Name=jgi.p|Nanoce1779_2|582530|organism=Nannochloropsis oceanica|type=CDS|length=3060bp|location=Sequence derived from alignment at scaffold_6:610869..612810+ (Nannochloropsis oceanica)
ATGAACGCGGAATACGACTATCTCTTCAAGCTCCTGCTGATTGGAGACTC
AGGTGTAGGAAAGTCCTGTTTGCTGTTGCGCTTTGCGGACGACACATACA
CAGAAAGCTACATTTCCACCATCGGTGTCGATTTCAAAATCCGCACCATT
GAGCTGGAGGGGAAGACTATTAAGTTGCAGATTTGGGATACGGCCGGGCA
GGAGCGTTTCCGCACCATCACTTCCTCCTACTACAGAGGCGCACACGGCA
TCATCGTGGTCTACGATGTGACTGACCAGGAGTCATTCAACAACGTGAAG
CAGTGGCTCCACGAGATTAATCGCTACGCCTCCGAGAATGTCAACAAGCT
CCTCGTCGGCAACAAGAGCGATCTGGAACCCAAGCGCGTGGTCTCCACGG
AAGCCGCCAAGGAATTTGCTGACTCCTTAGGGATCGCCTTCCTTGAGACC
TCCGCCAAAAACTCAACCAATGTCGAAAAGGCCTTCCTGACCATGGCCTC
TCAAATCAAAGCACGGATGAAGACCCAACCGGTGGGCCCCAAAACGGGGG
GGACAAAGCTGACGCCCTCCACAGCGGTGGGCGGGCCGGGTGCGTCGTCG
GGGTGCTGCTAGATGAACGCGGAATACGACTATCTCTTCAAGCTCCTGCT
GATTGGAGACTCAGGTGTAGGAAAGTCCTGTTTGCTGTTGCGCTTTGCGG
ACGACACATACACAGAAAGCTACATTTCCACCATCGGTGTCGATTTCAAA
ATCCGCACCATTGAGCTGGAGGGGAAGACTATTAAGTTGCAGATTTGGGA
TACGGCCGGGCAGGAGCGTTTCCGCACCATCACTTCCTCCTACTACAGAG
GCGCACACGGCATCATCGTGGTCTACGATGTGACTGACCAGGAGTCATTC
AACAACGTGAAGCAGTGGCTCCACGAGATTAATCGCTACGCCTCCGAGAA
TGTCAACAAGCTCCTCGTCGGCAACAAGAGCGATCTGGAACCCAAGCGCG
TGGTCTCCACGGAAGCCGCCAAGGAATTTGCTGACTCCTTAGGGATCGCC
TTCCTTGAGACCTCCGCCAAAAACTCAACCAATGTCGAAAAGGCCTTCCT
GACCATGGCCTCTCAAATCAAAGCACGGATGAAGACCCAACCGGTGGGCC
CCAAAACGGGGGGGACAAAGCTGACGCCCTCCACAGCGGTGGGCGGGCCG
GGTGCGTCGTCGGGGTGCTGCTAGATGAACGCGGAATACGACTATCTCTT
CAAGCTCCTGCTGATTGGAGACTCAGGTGTAGGAAAGTCCTGTTTGCTGT
TGCGCTTTGCGGACGACACATACACAGAAAGCTACATTTCCACCATCGGT
GTCGATTTCAAAATCCGCACCATTGAGCTGGAGGGGAAGACTATTAAGTT
GCAGATTTGGGATACGGCCGGGCAGGAGCGTTTCCGCACCATCACTTCCT
CCTACTACAGAGGCGCACACGGCATCATCGTGGTCTACGATGTGACTGAC
CAGGAGTCATTCAACAACGTGAAGCAGTGGCTCCACGAGATTAATCGCTA
CGCCTCCGAGAATGTCAACAAGCTCCTCGTCGGCAACAAGAGCGATCTGG
AACCCAAGCGCGTGGTCTCCACGGAAGCCGCCAAGGAATTTGCTGACTCC
TTAGGGATCGCCTTCCTTGAGACCTCCGCCAAAAACTCAACCAATGTCGA
AAAGGCCTTCCTGACCATGGCCTCTCAAATCAAAGCACGGATGAAGACCC
AACCGGTGGGCCCCAAAACGGGGGGGACAAAGCTGACGCCCTCCACAGCG
GTGGGCGGGCCGGGTGCGTCGTCGGGGTGCTGCTAGATGAACGCGGAATA
CGACTATCTCTTCAAGCTCCTGCTGATTGGAGACTCAGGTGTAGGAAAGT
CCTGTTTGCTGTTGCGCTTTGCGGACGACACATACACAGAAAGCTACATT
TCCACCATCGGTGTCGATTTCAAAATCCGCACCATTGAGCTGGAGGGGAA
GACTATTAAGTTGCAGATTTGGGATACGGCCGGGCAGGAGCGTTTCCGCA
CCATCACTTCCTCCTACTACAGAGGCGCACACGGCATCATCGTGGTCTAC
GATGTGACTGACCAGGAGTCATTCAACAACGTGAAGCAGTGGCTCCACGA
GATTAATCGCTACGCCTCCGAGAATGTCAACAAGCTCCTCGTCGGCAACA
AGAGCGATCTGGAACCCAAGCGCGTGGTCTCCACGGAAGCCGCCAAGGAA
TTTGCTGACTCCTTAGGGATCGCCTTCCTTGAGACCTCCGCCAAAAACTC
AACCAATGTCGAAAAGGCCTTCCTGACCATGGCCTCTCAAATCAAAGCAC
GGATGAAGACCCAACCGGTGGGCCCCAAAACGGGGGGGACAAAGCTGACG
CCCTCCACAGCGGTGGGCGGGCCGGGTGCGTCGTCGGGGTGCTGCTAGAT
GAACGCGGAATACGACTATCTCTTCAAGCTCCTGCTGATTGGAGACTCAG
GTGTAGGAAAGTCCTGTTTGCTGTTGCGCTTTGCGGACGACACATACACA
GAAAGCTACATTTCCACCATCGGTGTCGATTTCAAAATCCGCACCATTGA
GCTGGAGGGGAAGACTATTAAGTTGCAGATTTGGGATACGGCCGGGCAGG
AGCGTTTCCGCACCATCACTTCCTCCTACTACAGAGGCGCACACGGCATC
ATCGTGGTCTACGATGTGACTGACCAGGAGTCATTCAACAACGTGAAGCA
GTGGCTCCACGAGATTAATCGCTACGCCTCCGAGAATGTCAACAAGCTCC
TCGTCGGCAACAAGAGCGATCTGGAACCCAAGCGCGTGGTCTCCACGGAA
GCCGCCAAGGAATTTGCTGACTCCTTAGGGATCGCCTTCCTTGAGACCTC
CGCCAAAAACTCAACCAATGTCGAAAAGGCCTTCCTGACCATGGCCTCTC
AAATCAAAGCACGGATGAAGACCCAACCGGTGGGCCCCAAAACGGGGGGG
ACAAAGCTGACGCCCTCCACAGCGGTGGGCGGGCCGGGTGCGTCGTCGGG
GTGCTGCTAG

Synonyms

Publications