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Properties
| Property Name | Value |
|---|
| TranscriptId | 553034 |
| Track | FilteredModels2 |
| ProteinId | 552948 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:605267..606232 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3539 ID=mRNA_3539|Name=jgi.p|Nanoce1779_2|552948|organism=Nannochloropsis oceanica|type=mRNA|length=834bp
ATGTTCCATAACACGTACCAAGCGGGCTTCCTGTCCATTTTCTACTCAAT
TGGAAGCAAGCCCTTGCAGATATGGGATTCCTCGGTACAAAACGGGTACA
TTAAGCGCATTACGGATGAGGACATCCAGTCGTCCGTGCTGGAAATTGTG
GGATGCAACGTCTCCACTACTTTCATTCAGTGCCCGGCCGAGAAGAGCAA
GACGCTGGGCATTAAGCTGCCATACCTCATGATCGTCCTTAAAAATCTGA
ACAAGTACTTCACCTTCGAAGTGACCATCCTAGACGACCAGAACATCCGC
CGCCGTTTCCGAGCTTCTACCTTCCAGTCCTGCACGCGCGTTAAGCCTTT
CATCTGCACTATGCCCATGCGCCTCGACGACGGCTGGAACCAAATTCAAT
TTAACCTTGCCGACTTCACCCGACGCGCCTACGGGACCAACTACGTCGAG
ACGCTGCGTGTGCAAGTCCATGCGAACTGTCGCCTCCGTCGAATCTACTT
CTCTGACCGCCTATACACCGAGGAGGAGCTCCCAGCTGAGTTCAAGGTCT
TCCTTCCCATCTCCCAGCACGAAAAGGCAGCTATGGCGGCAGCGGCGGCG
GCCCTGAAAAAGGATAGGGCAGGGCGAGCTATTGAGCAGCAGCAGCAGCA
GCAACAACAGCAGCAAGAGGAGGAGGAGGAAAAGGACGAGAAAAAGATGG
TGGTGCCGGCAGCAGTGGAGGCAATCAAGTTGCTGCATCGGCTGGTCGGG
CAGCAGGGTGAGGGAGAGCTGGTGGAGCAGTTTGGGGGTAAGAATGGGGA
GGATGCGATTCCTGTCCCTGCAGGAGGCGTGTAA back to topprotein sequence of jgi.p|Nanoce1779_2|552948 >mRNA_3539-protein ID=mRNA_3539-protein|Name=jgi.p|Nanoce1779_2|552948|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MFHNTYQAGFLSIFYSIGSKPLQIWDSSVQNGYIKRITDEDIQSSVLEIV
GCNVSTTFIQCPAEKSKTLGIKLPYLMIVLKNLNKYFTFEVTILDDQNIR
RRFRASTFQSCTRVKPFICTMPMRLDDGWNQIQFNLADFTRRAYGTNYVE
TLRVQVHANCRLRRIYFSDRLYTEEELPAEFKVFLPISQHEKAAMAAAAA
ALKKDRAGRAIEQQQQQQQQQQEEEEEKDEKKMVVPAAVEAIKLLHRLVG
QQGEGELVEQFGGKNGEDAIPVPAGGV* back to topmRNA from alignment at scaffold_6:605267..606232- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3539 ID=mRNA_3539|Name=jgi.p|Nanoce1779_2|552948|organism=Nannochloropsis oceanica|type=mRNA|length=966bp|location=Sequence derived from alignment at scaffold_6:605267..606232- (Nannochloropsis oceanica)
ATGTTCCATAACACGTACCAAGCGGGCTTCCTGTCCATTTTCTACTCAAT
TGGAAGCAAGCCCTTGCAGATATGGGATTCCTCGGTACAAAACGGGTACA
TTAAGCGCATTACGGATGAGGACATCCAGTCGTCCGTGCTGGAAATTGTG
GGATGCAACGTCTCCACTACTTTCATTCAGTGCCCGGCCGAGAAGAGCAA
GACGCTGGGCATTAAGCTGCCATACCTCATGATCGTCCTTAAAAATGTAC
GTTTTTGAATGACAAAATAACTGTTTGTTGTTATACCAGTATTATTGTGG
CTCTTTCCCGCTCATAAGCTTCAAAAATAGACTTCTTTTCATAAATATTC
GACACCCGAATCCACCTCCGTCCAACAGCTGAACAAGTACTTCACCTTCG
AAGTGACCATCCTAGACGACCAGAACATCCGCCGCCGTTTCCGAGCTTCT
ACCTTCCAGTCCTGCACGCGCGTTAAGCCTTTCATCTGCACTATGCCCAT
GCGCCTCGACGACGGCTGGAACCAAATTCAATTTAACCTTGCCGACTTCA
CCCGACGCGCCTACGGGACCAACTACGTCGAGACGCTGCGTGTGCAAGTC
CATGCGAACTGTCGCCTCCGTCGAATCTACTTCTCTGACCGCCTATACAC
CGAGGAGGAGCTCCCAGCTGAGTTCAAGGTCTTCCTTCCCATCTCCCAGC
ACGAAAAGGCAGCTATGGCGGCAGCGGCGGCGGCCCTGAAAAAGGATAGG
GCAGGGCGAGCTATTGAGCAGCAGCAGCAGCAGCAACAACAGCAGCAAGA
GGAGGAGGAGGAAAAGGACGAGAAAAAGATGGTGGTGCCGGCAGCAGTGG
AGGCAATCAAGTTGCTGCATCGGCTGGTCGGGCAGCAGGGTGAGGGAGAG
CTGGTGGAGCAGTTTGGGGGTAAGAATGGGGAGGATGCGATTCCTGTCCC
TGCAGGAGGCGTGTAA back to topCoding sequence (CDS) from alignment at scaffold_6:605267..606232- >mRNA_3539 ID=mRNA_3539|Name=jgi.p|Nanoce1779_2|552948|organism=Nannochloropsis oceanica|type=CDS|length=1668bp|location=Sequence derived from alignment at scaffold_6:605267..606232- (Nannochloropsis oceanica)
CTGAACAAGTACTTCACCTTCGAAGTGACCATCCTAGACGACCAGAACAT
CCGCCGCCGTTTCCGAGCTTCTACCTTCCAGTCCTGCACGCGCGTTAAGC
CTTTCATCTGCACTATGCCCATGCGCCTCGACGACGGCTGGAACCAAATT
CAATTTAACCTTGCCGACTTCACCCGACGCGCCTACGGGACCAACTACGT
CGAGACGCTGCGTGTGCAAGTCCATGCGAACTGTCGCCTCCGTCGAATCT
ACTTCTCTGACCGCCTATACACCGAGGAGGAGCTCCCAGCTGAGTTCAAG
GTCTTCCTTCCCATCTCCCAGCACGAAAAGGCAGCTATGGCGGCAGCGGC
GGCGGCCCTGAAAAAGGATAGGGCAGGGCGAGCTATTGAGCAGCAGCAGC
AGCAGCAACAACAGCAGCAAGAGGAGGAGGAGGAAAAGGACGAGAAAAAG
ATGGTGGTGCCGGCAGCAGTGGAGGCAATCAAGTTGCTGCATCGGCTGGT
CGGGCAGCAGGGTGAGGGAGAGCTGGTGGAGCAGTTTGGGGGTAAGAATG
GGGAGGATGCGATTCCTGTCCCTGCAGGAGGCGTGTAAATGTTCCATAAC
ACGTACCAAGCGGGCTTCCTGTCCATTTTCTACTCAATTGGAAGCAAGCC
CTTGCAGATATGGGATTCCTCGGTACAAAACGGGTACATTAAGCGCATTA
CGGATGAGGACATCCAGTCGTCCGTGCTGGAAATTGTGGGATGCAACGTC
TCCACTACTTTCATTCAGTGCCCGGCCGAGAAGAGCAAGACGCTGGGCAT
TAAGCTGCCATACCTCATGATCGTCCTTAAAAATCTGAACAAGTACTTCA
CCTTCGAAGTGACCATCCTAGACGACCAGAACATCCGCCGCCGTTTCCGA
GCTTCTACCTTCCAGTCCTGCACGCGCGTTAAGCCTTTCATCTGCACTAT
GCCCATGCGCCTCGACGACGGCTGGAACCAAATTCAATTTAACCTTGCCG
ACTTCACCCGACGCGCCTACGGGACCAACTACGTCGAGACGCTGCGTGTG
CAAGTCCATGCGAACTGTCGCCTCCGTCGAATCTACTTCTCTGACCGCCT
ATACACCGAGGAGGAGCTCCCAGCTGAGTTCAAGGTCTTCCTTCCCATCT
CCCAGCACGAAAAGGCAGCTATGGCGGCAGCGGCGGCGGCCCTGAAAAAG
GATAGGGCAGGGCGAGCTATTGAGCAGCAGCAGCAGCAGCAACAACAGCA
GCAAGAGGAGGAGGAGGAAAAGGACGAGAAAAAGATGGTGGTGCCGGCAG
CAGTGGAGGCAATCAAGTTGCTGCATCGGCTGGTCGGGCAGCAGGGTGAG
GGAGAGCTGGTGGAGCAGTTTGGGGGTAAGAATGGGGAGGATGCGATTCC
TGTCCCTGCAGGAGGCGTGTAAATGTTCCATAACACGTACCAAGCGGGCT
TCCTGTCCATTTTCTACTCAATTGGAAGCAAGCCCTTGCAGATATGGGAT
TCCTCGGTACAAAACGGGTACATTAAGCGCATTACGGATGAGGACATCCA
GTCGTCCGTGCTGGAAATTGTGGGATGCAACGTCTCCACTACTTTCATTC
AGTGCCCGGCCGAGAAGAGCAAGACGCTGGGCATTAAGCTGCCATACCTC
ATGATCGTCCTTAAAAAT back to top
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