jgi.p|Nanoce1779_2|625090, mRNA_3538 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|625090
Unique Name	mRNA_3538
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2147
Alignment location	scaffold_6:603226..605483 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	625176
Track	FilteredModels2
ProteinId	625090

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:603226..605483 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|625090	gene_3538	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|625090	mRNA_3538-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3538	CDS_3538	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:603226..605483+
coding sequence from alignment at scaffold_6:603226..605483+

mRNA sequence

>mRNA_3538 ID=mRNA_3538|Name=jgi.p|Nanoce1779_2|625090|organism=Nannochloropsis oceanica|type=mRNA|length=2147bp
ACAAGAAGCGTCAAGGTGATTATTTAAGTGCGCGGTCAGATGTGGCAACC
CGCACAGCTCAGGACCAAGGACATGGACGCGTCGATGGGCCAGGCTTTCT
CCTTATAGCATATCTCTCATCGCCGTTCGACTTCCGAGACTGTCCATTCC
AACTTCACTCGACCACTGGATATTGACCTTCCACTCCGTACTACATACCA
CCCAGCGTTGGCCAACGGGGGAGGACCGAACTCAAGCCTCTTTTTGTTTT
GGTCGACCTCCTTTTCCCAAGCGACTGATCTTGGAGAAGCGAGCAAGCCA
TGCTCACCAGCACCAGCCAGCTTGACCACCCACGCCGTGCACGCCGTCGT
CCCCGTGCTCCTTCGTGTAGTACTTTGGTGCTGAGCGCAATTATGCTTCT
CCATAGATCGGCCGTGGCCTTTTTGACACAGACCCCTTTCACGAGCAGCA
AGATCTTAAGGCTACGATCTGTGCTGCCGGGCAATACGGCATCCTTAACA
ACCCTTGGCGCTGGCGGGCGAAAGCGCGGCGAGATCCTCAAGCCCGAGTA
CGGCCTGAGGCCCGACGAGGAAGGCGTCTCCATCTCCCGGCACAACATCA
ACTGGTACCCCGGCCACATCGCCAAGGCTGAGAGGGAGCTGCAGGATTTT
TTGAAGCTCGTAGATGTGGTGATCGAGGCACGGGATGCCCGCATCCCTAC
CTCTACTACTCATCCTTTGGTTCGGCAATGGATTGGCCGACGGCCATTAA
TCGTAGCTATGACCCGCAAAGACATGGCCCCCGCTGGCGCCATGAAAGAA
TGGGGCGACTTTTACGTCAAATCTGCCCGGGCCGCCTCTCGAATGGGCCA
ACCGCGCGTCCCTGTGGTGTTTGTCGACTCAAGGCAAGGCACAGACATAC
ACCGTCTCAAAATGATTGCGCTGAAGGCAGGCGCCGCGGTCAATGAGCGG
CGGGCCCGCCTTGGCCTCCTGCCACGCAGCATCCGAGTAGCTGTAATCGG
ATACCCGAACGTCGGTAAATCTGCGATCATTAATAAGCTGATCGGAAGGA
AGCTGGCCAAGAGTAAGAATATGCCCGGTGTGACCAAGCGCATTTCCTGG
GTTCGTTTGGGAGCGGCTGCGATGGGCGGTTCCCGGAAAGAAGACGAGTT
GGAATTGCTAGACTCCCCTGGAATTATTCCCGCGAAGCAAGTGGACCAAA
ACACTGCTTTCAAGCTAGCGGTATGCAATGATATTGGACAAGCGTCTTAC
GACGTCCAAGTAGTCGCGGGCGAGCTGATAAACATGCTCTGTCGCGTCCA
CGAAAGCCGCCCAGGCTACGTAGACCTCTCCAGACTCCAGCAACGGTACC
AACTTGACCCTTGGATTTTAACAGGAGAGGAGTTTTTGCATGCATTGGCT
GCAAAGCTGTACAGGGGGAATCTGTATTCCGCTGCAGATCGACTGATGTC
TGATTTTAGGAAAGGGCATTTTGGACCTGTCACCCTTGAGGTTCCTCCTG
AGATAGACGAAGGGGAGGCGGCCTTGGCAGCGGCAGAGATGGCGGGGAGG
GAAGCGAAAGAGGAGGAGCGGAGGAGACGACAGCGGAGAAGGGAGCTGAT
GGAAATGACGAAGGAGGAGGGGGAAAGGGAGGTGGGGTTGTCTTTGGGAG
GAGGGGAGGAGGTTGGGGAGTTAGGCTTGGGAGGAGGAGCAGTGCAGGAA
TTGGACCCAGTGGGAGAGGCATATGAGGAAGCATTTGAGGACAGGAAGCA
AGGCCCTGGTGAAGGGGAGAGTCCCAAGGTGGGAGTAGGACAGTTTGAAG
GGTGGTGAAGAGAAAGAGATAGGCGCAAAATGTCGCGCTTAAGTAATTAA
ATAATAATATGTGCAAGAAATTAAATAGAGCACATTACACCTAAAGCAAA
TGAATACTCTTTCAGCCTGATTTCTTTTCCTTACACGCCTCCTGCAGGGA
CAGGAATCGCATCCTCCCCATTCTTACCCCCAAACTGCTCCACCAGCTCT
CCCTCACCCTGCTGCCCGACCAGCCGATGCAGCAACTTGATTGCCTCCAC
TGCTGCCGGCACCACCATCTTTTTCTCGTCCTTTTCCTCCTCCTCCTCTT
GCTGCTGTTGTTGCTGCTGCTGCTGCTGCTCAATAGCTCGCCCTGCC

protein sequence of jgi.p|Nanoce1779_2|625090

>mRNA_3538-protein ID=mRNA_3538-protein|Name=jgi.p|Nanoce1779_2|625090|organism=Nannochloropsis oceanica|type=polypeptide|length=503bp
MLTSTSQLDHPRRARRRPRAPSCSTLVLSAIMLLHRSAVAFLTQTPFTSS
KILRLRSVLPGNTASLTTLGAGGRKRGEILKPEYGLRPDEEGVSISRHNI
NWYPGHIAKAERELQDFLKLVDVVIEARDARIPTSTTHPLVRQWIGRRPL
IVAMTRKDMAPAGAMKEWGDFYVKSARAASRMGQPRVPVVFVDSRQGTDI
HRLKMIALKAGAAVNERRARLGLLPRSIRVAVIGYPNVGKSAIINKLIGR
KLAKSKNMPGVTKRISWVRLGAAAMGGSRKEDELELLDSPGIIPAKQVDQ
NTAFKLAVCNDIGQASYDVQVVAGELINMLCRVHESRPGYVDLSRLQQRY
QLDPWILTGEEFLHALAAKLYRGNLYSAADRLMSDFRKGHFGPVTLEVPP
EIDEGEAALAAAEMAGREAKEEERRRRQRRRELMEMTKEEGEREVGLSLG
GGEEVGELGLGGGAVQELDPVGEAYEEAFEDRKQGPGEGESPKVGVGQFE
GW*

mRNA from alignment at scaffold_6:603226..605483+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3538 ID=mRNA_3538|Name=jgi.p|Nanoce1779_2|625090|organism=Nannochloropsis oceanica|type=mRNA|length=2258bp|location=Sequence derived from alignment at scaffold_6:603226..605483+ (Nannochloropsis oceanica)
ACAAGAAGCGTCAAGGTGATTATTTAAGTGCGCGGTCAGATGTGGCAACC
CGCACAGCTCAGGACCAAGGACATGGACGCGTCGATGGGCCAGGCTTTCT
CCTTATAGCATATCTCTCATCGCCGTTCGACTTCCGAGACTGTCCATTCC
AACTTCACTCGACCACTGGATATTGACCTTCCACTCCGTACTACATACCA
CCCAGCGTTGGCCAACGGGGGAGGACCGAACTCAAGCCTCTTTTTGTTTT
GGTCGACCTCCTTTTCCCAAGCGACTGATCTTGGAGAAGCGAGCAAGCCA
TGCTCACCAGCACCAGCCAGCTTGACCACCCACGCCGTGCACGCCGTCGT
CCCCGTGCTCCTTCGTGTAGTACTTTGGTGCTGAGCGCAATTATGCTTCT
CCATAGATCGGCCGTGGCCTTTTTGACACAGGTAGGTAGGCTGTCTTGCT
GTTTTACTGCTCGTTGCCCTCCTATCCCTCCCTCCTTCCGACGCGCCGGA
GAAGTTTGACTAAATTGCCCCTGCCCCTGCCTTAAAACACAGACCCCTTT
CACGAGCAGCAAGATCTTAAGGCTACGATCTGTGCTGCCGGGCAATACGG
CATCCTTAACAACCCTTGGCGCTGGCGGGCGAAAGCGCGGCGAGATCCTC
AAGCCCGAGTACGGCCTGAGGCCCGACGAGGAAGGCGTCTCCATCTCCCG
GCACAACATCAACTGGTACCCCGGCCACATCGCCAAGGCTGAGAGGGAGC
TGCAGGATTTTTTGAAGCTCGTAGATGTGGTGATCGAGGCACGGGATGCC
CGCATCCCTACCTCTACTACTCATCCTTTGGTTCGGCAATGGATTGGCCG
ACGGCCATTAATCGTAGCTATGACCCGCAAAGACATGGCCCCCGCTGGCG
CCATGAAAGAATGGGGCGACTTTTACGTCAAATCTGCCCGGGCCGCCTCT
CGAATGGGCCAACCGCGCGTCCCTGTGGTGTTTGTCGACTCAAGGCAAGG
CACAGACATACACCGTCTCAAAATGATTGCGCTGAAGGCAGGCGCCGCGG
TCAATGAGCGGCGGGCCCGCCTTGGCCTCCTGCCACGCAGCATCCGAGTA
GCTGTAATCGGATACCCGAACGTCGGTAAATCTGCGATCATTAATAAGCT
GATCGGAAGGAAGCTGGCCAAGAGTAAGAATATGCCCGGTGTGACCAAGC
GCATTTCCTGGGTTCGTTTGGGAGCGGCTGCGATGGGCGGTTCCCGGAAA
GAAGACGAGTTGGAATTGCTAGACTCCCCTGGAATTATTCCCGCGAAGCA
AGTGGACCAAAACACTGCTTTCAAGCTAGCGGTATGCAATGATATTGGAC
AAGCGTCTTACGACGTCCAAGTAGTCGCGGGCGAGCTGATAAACATGCTC
TGTCGCGTCCACGAAAGCCGCCCAGGCTACGTAGACCTCTCCAGACTCCA
GCAACGGTACCAACTTGACCCTTGGATTTTAACAGGAGAGGAGTTTTTGC
ATGCATTGGCTGCAAAGCTGTACAGGGGGAATCTGTATTCCGCTGCAGAT
CGACTGATGTCTGATTTTAGGAAAGGGCATTTTGGACCTGTCACCCTTGA
GGTTCCTCCTGAGATAGACGAAGGGGAGGCGGCCTTGGCAGCGGCAGAGA
TGGCGGGGAGGGAAGCGAAAGAGGAGGAGCGGAGGAGACGACAGCGGAGA
AGGGAGCTGATGGAAATGACGAAGGAGGAGGGGGAAAGGGAGGTGGGGTT
GTCTTTGGGAGGAGGGGAGGAGGTTGGGGAGTTAGGCTTGGGAGGAGGAG
CAGTGCAGGAATTGGACCCAGTGGGAGAGGCATATGAGGAAGCATTTGAG
GACAGGAAGCAAGGCCCTGGTGAAGGGGAGAGTCCCAAGGTGGGAGTAGG
ACAGTTTGAAGGGTGGTGAAGAGAAAGAGATAGGCGCAAAATGTCGCGCT
TAAGTAATTAAATAATAATATGTGCAAGAAATTAAATAGAGCACATTACA
CCTAAAGCAAATGAATACTCTTTCAGCCTGATTTCTTTTCCTTACACGCC
TCCTGCAGGGACAGGAATCGCATCCTCCCCATTCTTACCCCCAAACTGCT
CCACCAGCTCTCCCTCACCCTGCTGCCCGACCAGCCGATGCAGCAACTTG
ATTGCCTCCACTGCTGCCGGCACCACCATCTTTTTCTCGTCCTTTTCCTC
CTCCTCCTCTTGCTGCTGTTGTTGCTGCTGCTGCTGCTGCTCAATAGCTC
GCCCTGCC

Coding sequence (CDS) from alignment at scaffold_6:603226..605483+

>mRNA_3538 ID=mRNA_3538|Name=jgi.p|Nanoce1779_2|625090|organism=Nannochloropsis oceanica|type=CDS|length=3018bp|location=Sequence derived from alignment at scaffold_6:603226..605483+ (Nannochloropsis oceanica)
ATGCTCACCAGCACCAGCCAGCTTGACCACCCACGCCGTGCACGCCGTCG
TCCCCGTGCTCCTTCGTGTAGTACTTTGGTGCTGAGCGCAATTATGCTTC
TCCATAGATCGGCCGTGGCCTTTTTGACACAGACCCCTTTCACGAGCAGC
AAGATCTTAAGGCTACGATCTGTGCTGCCGGGCAATACGGCATCCTTAAC
AACCCTTGGCGCTGGCGGGCGAAAGCGCGGCGAGATCCTCAAGCCCGAGT
ACGGCCTGAGGCCCGACGAGGAAGGCGTCTCCATCTCCCGGCACAACATC
AACTGGTACCCCGGCCACATCGCCAAGGCTGAGAGGGAGCTGCAGGATTT
TTTGAAGCTCGTAGATGTGGTGATCGAGGCACGGGATGCCCGCATCCCTA
CCTCTACTACTCATCCTTTGGTTCGGCAATGGATTGGCCGACGGCCATTA
ATCGTAGCTATGACCCGCAAAGACATGGCCCCCGCTGGCGCCATGAAAGA
ATGGGGCGACTTTTACGTCAAATCTGCCCGGGCCGCCTCTCGAATGGGCC
AACCGCGCGTCCCTGTGGTGTTTGTCGACTCAAGGCAAGGCACAGACATA
CACCGTCTCAAAATGATTGCGCTGAAGGCAGGCGCCGCGGTCAATGAGCG
GCGGGCCCGCCTTGGCCTCCTGCCACGCAGCATCCGAGTAGCTGTAATCG
GATACCCGAACGTCGGTAAATCTGCGATCATTAATAAGCTGATCGGAAGG
AAGCTGGCCAAGAGTAAGAATATGCCCGGTGTGACCAAGCGCATTTCCTG
GGTTCGTTTGGGAGCGGCTGCGATGGGCGGTTCCCGGAAAGAAGACGAGT
TGGAATTGCTAGACTCCCCTGGAATTATTCCCGCGAAGCAAGTGGACCAA
AACACTGCTTTCAAGCTAGCGGTATGCAATGATATTGGACAAGCGTCTTA
CGACGTCCAAGTAGTCGCGGGCGAGCTGATAAACATGCTCTGTCGCGTCC
ACGAAAGCCGCCCAGGCTACGTAGACCTCTCCAGACTCCAGCAACGGTAC
CAACTTGACCCTTGGATTTTAACAGGAGAGGAGTTTTTGCATGCATTGGC
TGCAAAGCTGTACAGGGGGAATCTGTATTCCGCTGCAGATCGACTGATGT
CTGATTTTAGGAAAGGGCATTTTGGACCTGTCACCCTTGAGGTTCCTCCT
GAGATAGACGAAGGGGAGGCGGCCTTGGCAGCGGCAGAGATGGCGGGGAG
GGAAGCGAAAGAGGAGGAGCGGAGGAGACGACAGCGGAGAAGGGAGCTGA
TGGAAATGACGAAGGAGGAGGGGGAAAGGGAGGTGGGGTTGTCTTTGGGA
GGAGGGGAGGAGGTTGGGGAGTTAGGCTTGGGAGGAGGAGCAGTGCAGGA
ATTGGACCCAGTGGGAGAGGCATATGAGGAAGCATTTGAGGACAGGAAGC
AAGGCCCTGGTGAAGGGGAGAGTCCCAAGGTGGGAGTAGGACAGTTTGAA
GGGTGGTGAATGCTCACCAGCACCAGCCAGCTTGACCACCCACGCCGTGC
ACGCCGTCGTCCCCGTGCTCCTTCGTGTAGTACTTTGGTGCTGAGCGCAA
TTATGCTTCTCCATAGATCGGCCGTGGCCTTTTTGACACAGACCCCTTTC
ACGAGCAGCAAGATCTTAAGGCTACGATCTGTGCTGCCGGGCAATACGGC
ATCCTTAACAACCCTTGGCGCTGGCGGGCGAAAGCGCGGCGAGATCCTCA
AGCCCGAGTACGGCCTGAGGCCCGACGAGGAAGGCGTCTCCATCTCCCGG
CACAACATCAACTGGTACCCCGGCCACATCGCCAAGGCTGAGAGGGAGCT
GCAGGATTTTTTGAAGCTCGTAGATGTGGTGATCGAGGCACGGGATGCCC
GCATCCCTACCTCTACTACTCATCCTTTGGTTCGGCAATGGATTGGCCGA
CGGCCATTAATCGTAGCTATGACCCGCAAAGACATGGCCCCCGCTGGCGC
CATGAAAGAATGGGGCGACTTTTACGTCAAATCTGCCCGGGCCGCCTCTC
GAATGGGCCAACCGCGCGTCCCTGTGGTGTTTGTCGACTCAAGGCAAGGC
ACAGACATACACCGTCTCAAAATGATTGCGCTGAAGGCAGGCGCCGCGGT
CAATGAGCGGCGGGCCCGCCTTGGCCTCCTGCCACGCAGCATCCGAGTAG
CTGTAATCGGATACCCGAACGTCGGTAAATCTGCGATCATTAATAAGCTG
ATCGGAAGGAAGCTGGCCAAGAGTAAGAATATGCCCGGTGTGACCAAGCG
CATTTCCTGGGTTCGTTTGGGAGCGGCTGCGATGGGCGGTTCCCGGAAAG
AAGACGAGTTGGAATTGCTAGACTCCCCTGGAATTATTCCCGCGAAGCAA
GTGGACCAAAACACTGCTTTCAAGCTAGCGGTATGCAATGATATTGGACA
AGCGTCTTACGACGTCCAAGTAGTCGCGGGCGAGCTGATAAACATGCTCT
GTCGCGTCCACGAAAGCCGCCCAGGCTACGTAGACCTCTCCAGACTCCAG
CAACGGTACCAACTTGACCCTTGGATTTTAACAGGAGAGGAGTTTTTGCA
TGCATTGGCTGCAAAGCTGTACAGGGGGAATCTGTATTCCGCTGCAGATC
GACTGATGTCTGATTTTAGGAAAGGGCATTTTGGACCTGTCACCCTTGAG
GTTCCTCCTGAGATAGACGAAGGGGAGGCGGCCTTGGCAGCGGCAGAGAT
GGCGGGGAGGGAAGCGAAAGAGGAGGAGCGGAGGAGACGACAGCGGAGAA
GGGAGCTGATGGAAATGACGAAGGAGGAGGGGGAAAGGGAGGTGGGGTTG
TCTTTGGGAGGAGGGGAGGAGGTTGGGGAGTTAGGCTTGGGAGGAGGAGC
AGTGCAGGAATTGGACCCAGTGGGAGAGGCATATGAGGAAGCATTTGAGG
ACAGGAAGCAAGGCCCTGGTGAAGGGGAGAGTCCCAAGGTGGGAGTAGGA
CAGTTTGAAGGGTGGTGA

Synonyms

Publications