jgi.p|Nanoce1779_2|582505, mRNA_3536 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582505
Unique NamemRNA_3536
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length884
Alignment locationscaffold_6:599598..600481 -

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Properties
Property NameValue
TranscriptId582591
TrackFilteredModels2
ProteinId582505
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:599598..600481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582505gene_3536Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582505mRNA_3536-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3536CDS_3536Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3536 ID=mRNA_3536|Name=jgi.p|Nanoce1779_2|582505|organism=Nannochloropsis oceanica|type=mRNA|length=884bp
AGACAGGAAGTAGCCAGCCTATCTTAGTCCCTCCAGATCGTCAGTCGCTT
CTACCGTTTCCGCTTAATATTGATATCCTCCATGAGTGTGCAAAACTGCA
CCACTACCACGCCGGACGATACCATCTGGCCTCCGATGTCATTTGATCGC
TCGATGGACTCAGCATCGAGCGTTTTCTCCGACACAGCGTCGCAGGGAAA
GGAGTGCAAAGAGAACGGGAGCGACGAAGAAGGTGAGAAAGAAAGAGAGA
AGATACTGAGTGAGCCGCCAAGGACTATATTGTGTATCGTGCGTCTGTCA
AACATCAGTACATGTGGTTTATATCCTCCCGGATTGGTTACGTACTGCAC
TCTTCCTCACAAGCCAGCGCCTCACGAGCTCACTTTGTCCCCTCTCGCAC
GCGCCAACCCTCAGTGAAAAAGGACCCGGGGCGTTGGACTGCGGAAGAGC
ATATCCTATTTCTCAAGGGCATGTCATTGTACGGCAAGTCCTGGAAAAAG
ATTTCGGAAATTGTCAAGACACGCTCGGTGGTCCAAATTCGCACGCATGC
TCAGAAGTATTTGATCAAATTGGAGAAAGCCCGAAAGGCAGGTCACCAGG
GCGTGTTGATGATGGACGGGAAGGGTGTCGATAATATGGAGCGTCGCGGC
ACTATAAAGGTATGCATGTGTTTCCTTCGCGATACCGGACTCGTTTGATT
CATTCTGCTTTTCTTCCACTTCTTCTTACAGAAATCGCCCCCGCCCGCCG
GCATCCTCAAGCCCGCCTCCATCTCCACGTCCTCGTCCTCCGAGTTGTTC
GTCCCCAAGGCCAAGAGACGCGTGCAATTACCAGCAGGCTATGTTTTAAA
TCGGGAACACCAACAACAACAACCACAACAACAA
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protein sequence of jgi.p|Nanoce1779_2|582505

>mRNA_3536-protein ID=mRNA_3536-protein|Name=jgi.p|Nanoce1779_2|582505|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MWFISSRIGYVLHSSSQASASRAHFVPSRTRQPSVKKDPGRWTAEEHILF
LKGMSLYGKSWKKISEIVKTRSVVQIRTHAQKYLIKLEKARKAGHQGVLM
MDGKGVDNMERRGTIKVCMCFLRDTGLV*
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mRNA from alignment at scaffold_6:599598..600481-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3536 ID=mRNA_3536|Name=jgi.p|Nanoce1779_2|582505|organism=Nannochloropsis oceanica|type=mRNA|length=884bp|location=Sequence derived from alignment at scaffold_6:599598..600481- (Nannochloropsis oceanica)
AGACAGGAAGTAGCCAGCCTATCTTAGTCCCTCCAGATCGTCAGTCGCTT
CTACCGTTTCCGCTTAATATTGATATCCTCCATGAGTGTGCAAAACTGCA
CCACTACCACGCCGGACGATACCATCTGGCCTCCGATGTCATTTGATCGC
TCGATGGACTCAGCATCGAGCGTTTTCTCCGACACAGCGTCGCAGGGAAA
GGAGTGCAAAGAGAACGGGAGCGACGAAGAAGGTGAGAAAGAAAGAGAGA
AGATACTGAGTGAGCCGCCAAGGACTATATTGTGTATCGTGCGTCTGTCA
AACATCAGTACATGTGGTTTATATCCTCCCGGATTGGTTACGTACTGCAC
TCTTCCTCACAAGCCAGCGCCTCACGAGCTCACTTTGTCCCCTCTCGCAC
GCGCCAACCCTCAGTGAAAAAGGACCCGGGGCGTTGGACTGCGGAAGAGC
ATATCCTATTTCTCAAGGGCATGTCATTGTACGGCAAGTCCTGGAAAAAG
ATTTCGGAAATTGTCAAGACACGCTCGGTGGTCCAAATTCGCACGCATGC
TCAGAAGTATTTGATCAAATTGGAGAAAGCCCGAAAGGCAGGTCACCAGG
GCGTGTTGATGATGGACGGGAAGGGTGTCGATAATATGGAGCGTCGCGGC
ACTATAAAGGTATGCATGTGTTTCCTTCGCGATACCGGACTCGTTTGATT
CATTCTGCTTTTCTTCCACTTCTTCTTACAGAAATCGCCCCCGCCCGCCG
GCATCCTCAAGCCCGCCTCCATCTCCACGTCCTCGTCCTCCGAGTTGTTC
GTCCCCAAGGCCAAGAGACGCGTGCAATTACCAGCAGGCTATGTTTTAAA
TCGGGAACACCAACAACAACAACCACAACAACAA
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Coding sequence (CDS) from alignment at scaffold_6:599598..600481-

>mRNA_3536 ID=mRNA_3536|Name=jgi.p|Nanoce1779_2|582505|organism=Nannochloropsis oceanica|type=CDS|length=387bp|location=Sequence derived from alignment at scaffold_6:599598..600481- (Nannochloropsis oceanica)
ATGTGGTTTATATCCTCCCGGATTGGTTACGTACTGCACTCTTCCTCACA
AGCCAGCGCCTCACGAGCTCACTTTGTCCCCTCTCGCACGCGCCAACCCT
CAGTGAAAAAGGACCCGGGGCGTTGGACTGCGGAAGAGCATATCCTATTT
CTCAAGGGCATGTCATTGTACGGCAAGTCCTGGAAAAAGATTTCGGAAAT
TGTCAAGACACGCTCGGTGGTCCAAATTCGCACGCATGCTCAGAAGTATT
TGATCAAATTGGAGAAAGCCCGAAAGGCAGGTCACCAGGGCGTGTTGATG
ATGGACGGGAAGGGTGTCGATAATATGGAGCGTCGCGGCACTATAAAGGT
ATGCATGTGTTTCCTTCGCGATACCGGACTCGTTTGA
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Synonyms
Publications