Properties
| Property Name | Value |
|---|
| TranscriptId | 582586 |
| Track | FilteredModels2 |
| ProteinId | 582500 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:598203..599578 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3535 ID=mRNA_3535|Name=jgi.p|Nanoce1779_2|582500|organism=Nannochloropsis oceanica|type=mRNA|length=1376bp
AACAACAACAACAACAACAACAATCTTTTAAAGTCCAAGACGCCTCCATA
CGCGCTCTTATGCCAATGTCTTCCAGCTTTCCCCTTTTAAATCTGCCCGC
CGGGTCCACAAATTGTGCAGTGGTATCCCACTCTTACCCTACCCTCTCCA
ATTCCTCCGCTCTCTACACTATGCAGCAGCTGATGGCTCCCCAAGAACCT
GAAATCGGTGGGCAGCTCCTCTCCCCCTCCTCTCATGCCCGTGCATGCTT
CATCGCTGCCTTAGCCCGTGGTGCAGGCCAGCTTGGGCATGAATTGACTA
CTTTGCCCCTCTCCTCGGGGTCACAGCCAGAGATATCCACACAAAGCAAC
CCTCTCAGCAGCGCTTCGGACGAGAACAATGGCAAGCGCCCACCTATCTT
CGAGAGTGTAACAGCGCCAGCTGGTGCCACTTCTAGCAGTACCTTCTCCA
CCGCCAGAGGCCCAACTGCCGTTCCTATCGAGCAGCCCCCCCACCACCGT
CTCTCCGCCTGTGTCGCTCCCCAGCAACCCAGCGTCTTACCCGCGGCCAT
TGCCTCTCCTGCCTGCCATATGATGGCTGAGACTTCCTCTTCTTCCTGCT
CATCTTTCAATTTGTCATCCTCCGCACCTGGCCAATATAACAAGGTGCCC
GACCCCTTAGAAGAGCTAATGCAAACCCTGACAAGAGGCAAGCTATCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCATCGGGCCGGAGGTAA
ACGAATTGCCCAGCATGCACGATATGCAAGTGTGGGAGCTGACCGAAGGG
CACGCTCGGCCTTTCTCCTTACGTTCGTGGGACGAGGATGATTTTGACAG
TATGTCTTCTTCCTCTTCCTCGGATCACGTCTCTTGCTCTCCGGGGAGTG
TAAGTGATTTCCGTTATATGCCTGCTGCTTAGAGGGGAGGAGAGAGTTTA
TGAATAAATGGTGGGGGAAGAGATAAAACCTGTCTCTTTGCCTGTGTGTA
TGCATGTGCTCTCACTCCACGATCCATGTAGCTTTTATACCAATGCGCGT
GTGGGGTGAATGATTGGAGGAACGTGGCATACATACAAGGAAGTGCAGTA
CGTGCATGTCTTCTGCATATCACCATGTTGGATAAAACGCCGAATGCGTG
TGTATGGAATATGTCCGTGCATTTTGTTTGTATGCTGAATGAACTGGTAA
AGATCGAAAGAACAAATTGATTGCTTTCTTTGTATTTTGATATCATTTTT
ATATGCATAGGGGAATAGAAGGAAAGTAAGCTTCAAAAAGTGGAGGACAC
AACATAACACTGCAGTTAGGAGACGAAGAGAAAATGAACGCAAAATTACA
AAAGAAAGTAATACACTGAAATTTAA back to topprotein sequence of jgi.p|Nanoce1779_2|582500 >mRNA_3535-protein ID=mRNA_3535-protein|Name=jgi.p|Nanoce1779_2|582500|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MPMSSSFPLLNLPAGSTNCAVVSHSYPTLSNSSALYTMQQLMAPQEPEIG
GQLLSPSSHARACFIAALARGAGQLGHELTTLPLSSGSQPEISTQSNPLS
SASDENNGKRPPIFESVTAPAGATSSSTFSTARGPTAVPIEQPPHHRLSA
CVAPQQPSVLPAAIASPACHMMAETSSSSCSSFNLSSSAPGQYNKVPDPL
EELMQTLTRGKLSSSSSSSSSSSSSIGPEVNELPSMHDMQVWELTEGHAR
PFSLRSWDEDDFDSMSSSSSSDHVSCSPGSVSDFRYMPAA* back to topmRNA from alignment at scaffold_6:598203..599578- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3535 ID=mRNA_3535|Name=jgi.p|Nanoce1779_2|582500|organism=Nannochloropsis oceanica|type=mRNA|length=1376bp|location=Sequence derived from alignment at scaffold_6:598203..599578- (Nannochloropsis oceanica)
AACAACAACAACAACAACAACAATCTTTTAAAGTCCAAGACGCCTCCATA
CGCGCTCTTATGCCAATGTCTTCCAGCTTTCCCCTTTTAAATCTGCCCGC
CGGGTCCACAAATTGTGCAGTGGTATCCCACTCTTACCCTACCCTCTCCA
ATTCCTCCGCTCTCTACACTATGCAGCAGCTGATGGCTCCCCAAGAACCT
GAAATCGGTGGGCAGCTCCTCTCCCCCTCCTCTCATGCCCGTGCATGCTT
CATCGCTGCCTTAGCCCGTGGTGCAGGCCAGCTTGGGCATGAATTGACTA
CTTTGCCCCTCTCCTCGGGGTCACAGCCAGAGATATCCACACAAAGCAAC
CCTCTCAGCAGCGCTTCGGACGAGAACAATGGCAAGCGCCCACCTATCTT
CGAGAGTGTAACAGCGCCAGCTGGTGCCACTTCTAGCAGTACCTTCTCCA
CCGCCAGAGGCCCAACTGCCGTTCCTATCGAGCAGCCCCCCCACCACCGT
CTCTCCGCCTGTGTCGCTCCCCAGCAACCCAGCGTCTTACCCGCGGCCAT
TGCCTCTCCTGCCTGCCATATGATGGCTGAGACTTCCTCTTCTTCCTGCT
CATCTTTCAATTTGTCATCCTCCGCACCTGGCCAATATAACAAGGTGCCC
GACCCCTTAGAAGAGCTAATGCAAACCCTGACAAGAGGCAAGCTATCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCATCGGGCCGGAGGTAA
ACGAATTGCCCAGCATGCACGATATGCAAGTGTGGGAGCTGACCGAAGGG
CACGCTCGGCCTTTCTCCTTACGTTCGTGGGACGAGGATGATTTTGACAG
TATGTCTTCTTCCTCTTCCTCGGATCACGTCTCTTGCTCTCCGGGGAGTG
TAAGTGATTTCCGTTATATGCCTGCTGCTTAGAGGGGAGGAGAGAGTTTA
TGAATAAATGGTGGGGGAAGAGATAAAACCTGTCTCTTTGCCTGTGTGTA
TGCATGTGCTCTCACTCCACGATCCATGTAGCTTTTATACCAATGCGCGT
GTGGGGTGAATGATTGGAGGAACGTGGCATACATACAAGGAAGTGCAGTA
CGTGCATGTCTTCTGCATATCACCATGTTGGATAAAACGCCGAATGCGTG
TGTATGGAATATGTCCGTGCATTTTGTTTGTATGCTGAATGAACTGGTAA
AGATCGAAAGAACAAATTGATTGCTTTCTTTGTATTTTGATATCATTTTT
ATATGCATAGGGGAATAGAAGGAAAGTAAGCTTCAAAAAGTGGAGGACAC
AACATAACACTGCAGTTAGGAGACGAAGAGAAAATGAACGCAAAATTACA
AAAGAAAGTAATACACTGAAATTTAA back to topCoding sequence (CDS) from alignment at scaffold_6:598203..599578- >mRNA_3535 ID=mRNA_3535|Name=jgi.p|Nanoce1779_2|582500|organism=Nannochloropsis oceanica|type=CDS|length=873bp|location=Sequence derived from alignment at scaffold_6:598203..599578- (Nannochloropsis oceanica)
ATGCCAATGTCTTCCAGCTTTCCCCTTTTAAATCTGCCCGCCGGGTCCAC
AAATTGTGCAGTGGTATCCCACTCTTACCCTACCCTCTCCAATTCCTCCG
CTCTCTACACTATGCAGCAGCTGATGGCTCCCCAAGAACCTGAAATCGGT
GGGCAGCTCCTCTCCCCCTCCTCTCATGCCCGTGCATGCTTCATCGCTGC
CTTAGCCCGTGGTGCAGGCCAGCTTGGGCATGAATTGACTACTTTGCCCC
TCTCCTCGGGGTCACAGCCAGAGATATCCACACAAAGCAACCCTCTCAGC
AGCGCTTCGGACGAGAACAATGGCAAGCGCCCACCTATCTTCGAGAGTGT
AACAGCGCCAGCTGGTGCCACTTCTAGCAGTACCTTCTCCACCGCCAGAG
GCCCAACTGCCGTTCCTATCGAGCAGCCCCCCCACCACCGTCTCTCCGCC
TGTGTCGCTCCCCAGCAACCCAGCGTCTTACCCGCGGCCATTGCCTCTCC
TGCCTGCCATATGATGGCTGAGACTTCCTCTTCTTCCTGCTCATCTTTCA
ATTTGTCATCCTCCGCACCTGGCCAATATAACAAGGTGCCCGACCCCTTA
GAAGAGCTAATGCAAACCCTGACAAGAGGCAAGCTATCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCTTCCATCGGGCCGGAGGTAAACGAATTGC
CCAGCATGCACGATATGCAAGTGTGGGAGCTGACCGAAGGGCACGCTCGG
CCTTTCTCCTTACGTTCGTGGGACGAGGATGATTTTGACAGTATGTCTTC
TTCCTCTTCCTCGGATCACGTCTCTTGCTCTCCGGGGAGTGTAAGTGATT
TCCGTTATATGCCTGCTGCTTAG back to top
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