jgi.p|Nanoce1779_2|363933, mRNA_3534 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|363933
Unique Name	mRNA_3534
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2006
Alignment location	scaffold_6:595602..597607 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	364019
Track	FilteredModels2
ProteinId	363933

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:595602..597607 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|363933	gene_3534	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|363933	mRNA_3534-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3534	CDS_3534	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:595602..597607+
coding sequence from alignment at scaffold_6:595602..597607+

mRNA sequence

>mRNA_3534 ID=mRNA_3534|Name=jgi.p|Nanoce1779_2|363933|organism=Nannochloropsis oceanica|type=mRNA|length=2006bp
CCCTACCGCCCCACACTCTACCCAGGCAGACAAGCTATCGCGTCGCTGCA
TTTGGGGTTTTTCCTTGGGTTAGGCCAGGGCGTGTAGCACGGGGAAGACG
ACGATTGCGGCAGCGAACACAAGGCGGCGAACAAGACCACCTGTTCTCGC
GACGACTATGGCGTCTGCGCGGGTCGAGGTCGCCGTGACCAAGGGAGGCG
CAGCCGTATCGGCGCCCGTGCGCAAAAAGAGGGAGTCCTTAAGCATGGTG
CCAACAAAGCCGGCCCCTGTCCTTGAGCGTTTGGACAAGACGCAGGGCAT
CCAGGACTCGGATTACCGAGTACACAGTGCCACGGTTGATGATCCGGCGG
GCGTCATCGTGCGAGATAAGGTCACTGGCGCCGTTGCGCTGGACATGTTT
GATTACGAGCAGCTGGAAAAGGTTGAGTTTTTGGCATCGGGAGCGTTTTC
GCACGTCTTTTCCGCCAAGTACCGCGGAAAGAGCGTGGTTGTGAAGCTTC
TGCGGGAACAATACAAAGAATCGACCGTGACGCTGAAGCAAATGCGGTTT
GAACAGACATTGCTGAGCCAGCTCAACCACCCAAACATTGTCGAGTTTGT
GGGGACGGGCGTGTATAATGGGGTACCGTTCACCGTGTTGGAGCGCTTGG
ACGAGACACTGAATCAGCGCATTGGTGGCGAGGTTCGCCTAACCATGCTG
GAGTCCTTGACCTATGCCATGGCTATCGGGGAGGCGCTTGTCTACATCCA
CGACGAGGCAATTTCCGGACACGTTACTCTGCATCGGGACCTCAAGCCGG
ATAACCTCGCTTTCGGGGAAGCAGGCAGCGTCAAGCTGATTGACTTTGGG
CTGGCCCGTTCGGTGCCGCGTGGGGGGTCGATTGATGAGGTGTATGAGAT
GACGGGAGAGACAGGGAGCTTGAGGTATATGGCGCCGGAGGTGGCCTTGG
GTATGCTTTACAATGCCAAGGCAGACGTCTATAGCTTGGCACTCATCACC
TGGCAGATGGTCCAAGGCACGAAACCTTTTCAGGGAATGAGCCGCAAGGA
CTTCTTCCATCACGTTGTTCACCGGCATTTTCGTCCTCCTGTCGACCCGA
AGTGGCCTGCGGCGCTTAGTGCCATAATATTGCGGGCCTGGGATCCCGAT
CAGCTTAAGCGACCCACGGCCAGGGAGTACGTGGATGCCTTGAAAGGAGT
CGTGCATGGCCTAAGTAGGCATCGCCGCAATTCCACTGGAAGCTCGCTTT
CCCGCGTCCGCAACATTTTTCAAATGATGAAGGAGCGGGCGGAAGACTAT
GTGGTGGGAACCACGGGGACGGCGGCGGCGACGGCAGTGGGAGGAGCAGC
AGCAGGAGACAGGACGCACCACGAGAAGCGTCGCTCCAGCGCGGCAGAGG
AGGAGCAGCCAGCATCGCGAGAAGAGGAGGCCCAGCAGCATAAACTGCAG
CCAACGCAGCAACGACCCAAGGAACAGCCGCGGCCTGTGCCGCCGGTCGA
CAGCTTGCCACGACCCATGACTGTGCCCAGATCAACGCCTAAGAGTACCC
CCGCGGCAGCTGCAGCAGTGTCTCGACCATCCCAGCCCGTGCCGCAAGGC
GAGGCTAAGGAGGAGGGGGATTCAGTACCGCAATTAAAGGAGAAGGCGGG
CATGGGACCCCCAGATCCGGTGGGGCAAATAGCGAGGGAGGGTGGGGGGG
CTGCGCATAAGAGGAGGAACAGTTACTAGCAGCAGCCGCAGGAGGAGCGC
CCGGTGCCTGACTTACCTTAGTTGTTAGATTTTAAGGAGTAGTACAAGTA
GTAGTAGTATCAGAGAAATGGAGAGGCAATGCTCACATTGCGTTCCTGTG
GTCATCTAATCAGTCTGCCGGACACCGACCACCGCCAACTGTAGTTGCAG
CACAACACTACCACCAACAGCGACAACGATACTACCGGCTAGGAAAATCT
TATGAGAGGGGACTCTTTTGATTTCCTAGTCATTGATCATATGCTGAGTT
CACCCA

protein sequence of jgi.p|Nanoce1779_2|363933

>mRNA_3534-protein ID=mRNA_3534-protein|Name=jgi.p|Nanoce1779_2|363933|organism=Nannochloropsis oceanica|type=polypeptide|length=524bp
MASARVEVAVTKGGAAVSAPVRKKRESLSMVPTKPAPVLERLDKTQGIQD
SDYRVHSATVDDPAGVIVRDKVTGAVALDMFDYEQLEKVEFLASGAFSHV
FSAKYRGKSVVVKLLREQYKESTVTLKQMRFEQTLLSQLNHPNIVEFVGT
GVYNGVPFTVLERLDETLNQRIGGEVRLTMLESLTYAMAIGEALVYIHDE
AISGHVTLHRDLKPDNLAFGEAGSVKLIDFGLARSVPRGGSIDEVYEMTG
ETGSLRYMAPEVALGMLYNAKADVYSLALITWQMVQGTKPFQGMSRKDFF
HHVVHRHFRPPVDPKWPAALSAIILRAWDPDQLKRPTAREYVDALKGVVH
GLSRHRRNSTGSSLSRVRNIFQMMKERAEDYVVGTTGTAAATAVGGAAAG
DRTHHEKRRSSAAEEEQPASREEEAQQHKLQPTQQRPKEQPRPVPPVDSL
PRPMTVPRSTPKSTPAAAAAVSRPSQPVPQGEAKEEGDSVPQLKEKAGMG
PPDPVGQIAREGGGAAHKRRNSY*

mRNA from alignment at scaffold_6:595602..597607+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3534 ID=mRNA_3534|Name=jgi.p|Nanoce1779_2|363933|organism=Nannochloropsis oceanica|type=mRNA|length=2006bp|location=Sequence derived from alignment at scaffold_6:595602..597607+ (Nannochloropsis oceanica)
CCCTACCGCCCCACACTCTACCCAGGCAGACAAGCTATCGCGTCGCTGCA
TTTGGGGTTTTTCCTTGGGTTAGGCCAGGGCGTGTAGCACGGGGAAGACG
ACGATTGCGGCAGCGAACACAAGGCGGCGAACAAGACCACCTGTTCTCGC
GACGACTATGGCGTCTGCGCGGGTCGAGGTCGCCGTGACCAAGGGAGGCG
CAGCCGTATCGGCGCCCGTGCGCAAAAAGAGGGAGTCCTTAAGCATGGTG
CCAACAAAGCCGGCCCCTGTCCTTGAGCGTTTGGACAAGACGCAGGGCAT
CCAGGACTCGGATTACCGAGTACACAGTGCCACGGTTGATGATCCGGCGG
GCGTCATCGTGCGAGATAAGGTCACTGGCGCCGTTGCGCTGGACATGTTT
GATTACGAGCAGCTGGAAAAGGTTGAGTTTTTGGCATCGGGAGCGTTTTC
GCACGTCTTTTCCGCCAAGTACCGCGGAAAGAGCGTGGTTGTGAAGCTTC
TGCGGGAACAATACAAAGAATCGACCGTGACGCTGAAGCAAATGCGGTTT
GAACAGACATTGCTGAGCCAGCTCAACCACCCAAACATTGTCGAGTTTGT
GGGGACGGGCGTGTATAATGGGGTACCGTTCACCGTGTTGGAGCGCTTGG
ACGAGACACTGAATCAGCGCATTGGTGGCGAGGTTCGCCTAACCATGCTG
GAGTCCTTGACCTATGCCATGGCTATCGGGGAGGCGCTTGTCTACATCCA
CGACGAGGCAATTTCCGGACACGTTACTCTGCATCGGGACCTCAAGCCGG
ATAACCTCGCTTTCGGGGAAGCAGGCAGCGTCAAGCTGATTGACTTTGGG
CTGGCCCGTTCGGTGCCGCGTGGGGGGTCGATTGATGAGGTGTATGAGAT
GACGGGAGAGACAGGGAGCTTGAGGTATATGGCGCCGGAGGTGGCCTTGG
GTATGCTTTACAATGCCAAGGCAGACGTCTATAGCTTGGCACTCATCACC
TGGCAGATGGTCCAAGGCACGAAACCTTTTCAGGGAATGAGCCGCAAGGA
CTTCTTCCATCACGTTGTTCACCGGCATTTTCGTCCTCCTGTCGACCCGA
AGTGGCCTGCGGCGCTTAGTGCCATAATATTGCGGGCCTGGGATCCCGAT
CAGCTTAAGCGACCCACGGCCAGGGAGTACGTGGATGCCTTGAAAGGAGT
CGTGCATGGCCTAAGTAGGCATCGCCGCAATTCCACTGGAAGCTCGCTTT
CCCGCGTCCGCAACATTTTTCAAATGATGAAGGAGCGGGCGGAAGACTAT
GTGGTGGGAACCACGGGGACGGCGGCGGCGACGGCAGTGGGAGGAGCAGC
AGCAGGAGACAGGACGCACCACGAGAAGCGTCGCTCCAGCGCGGCAGAGG
AGGAGCAGCCAGCATCGCGAGAAGAGGAGGCCCAGCAGCATAAACTGCAG
CCAACGCAGCAACGACCCAAGGAACAGCCGCGGCCTGTGCCGCCGGTCGA
CAGCTTGCCACGACCCATGACTGTGCCCAGATCAACGCCTAAGAGTACCC
CCGCGGCAGCTGCAGCAGTGTCTCGACCATCCCAGCCCGTGCCGCAAGGC
GAGGCTAAGGAGGAGGGGGATTCAGTACCGCAATTAAAGGAGAAGGCGGG
CATGGGACCCCCAGATCCGGTGGGGCAAATAGCGAGGGAGGGTGGGGGGG
CTGCGCATAAGAGGAGGAACAGTTACTAGCAGCAGCCGCAGGAGGAGCGC
CCGGTGCCTGACTTACCTTAGTTGTTAGATTTTAAGGAGTAGTACAAGTA
GTAGTAGTATCAGAGAAATGGAGAGGCAATGCTCACATTGCGTTCCTGTG
GTCATCTAATCAGTCTGCCGGACACCGACCACCGCCAACTGTAGTTGCAG
CACAACACTACCACCAACAGCGACAACGATACTACCGGCTAGGAAAATCT
TATGAGAGGGGACTCTTTTGATTTCCTAGTCATTGATCATATGCTGAGTT
CACCCA

Coding sequence (CDS) from alignment at scaffold_6:595602..597607+

>mRNA_3534 ID=mRNA_3534|Name=jgi.p|Nanoce1779_2|363933|organism=Nannochloropsis oceanica|type=CDS|length=1572bp|location=Sequence derived from alignment at scaffold_6:595602..597607+ (Nannochloropsis oceanica)
ATGGCGTCTGCGCGGGTCGAGGTCGCCGTGACCAAGGGAGGCGCAGCCGT
ATCGGCGCCCGTGCGCAAAAAGAGGGAGTCCTTAAGCATGGTGCCAACAA
AGCCGGCCCCTGTCCTTGAGCGTTTGGACAAGACGCAGGGCATCCAGGAC
TCGGATTACCGAGTACACAGTGCCACGGTTGATGATCCGGCGGGCGTCAT
CGTGCGAGATAAGGTCACTGGCGCCGTTGCGCTGGACATGTTTGATTACG
AGCAGCTGGAAAAGGTTGAGTTTTTGGCATCGGGAGCGTTTTCGCACGTC
TTTTCCGCCAAGTACCGCGGAAAGAGCGTGGTTGTGAAGCTTCTGCGGGA
ACAATACAAAGAATCGACCGTGACGCTGAAGCAAATGCGGTTTGAACAGA
CATTGCTGAGCCAGCTCAACCACCCAAACATTGTCGAGTTTGTGGGGACG
GGCGTGTATAATGGGGTACCGTTCACCGTGTTGGAGCGCTTGGACGAGAC
ACTGAATCAGCGCATTGGTGGCGAGGTTCGCCTAACCATGCTGGAGTCCT
TGACCTATGCCATGGCTATCGGGGAGGCGCTTGTCTACATCCACGACGAG
GCAATTTCCGGACACGTTACTCTGCATCGGGACCTCAAGCCGGATAACCT
CGCTTTCGGGGAAGCAGGCAGCGTCAAGCTGATTGACTTTGGGCTGGCCC
GTTCGGTGCCGCGTGGGGGGTCGATTGATGAGGTGTATGAGATGACGGGA
GAGACAGGGAGCTTGAGGTATATGGCGCCGGAGGTGGCCTTGGGTATGCT
TTACAATGCCAAGGCAGACGTCTATAGCTTGGCACTCATCACCTGGCAGA
TGGTCCAAGGCACGAAACCTTTTCAGGGAATGAGCCGCAAGGACTTCTTC
CATCACGTTGTTCACCGGCATTTTCGTCCTCCTGTCGACCCGAAGTGGCC
TGCGGCGCTTAGTGCCATAATATTGCGGGCCTGGGATCCCGATCAGCTTA
AGCGACCCACGGCCAGGGAGTACGTGGATGCCTTGAAAGGAGTCGTGCAT
GGCCTAAGTAGGCATCGCCGCAATTCCACTGGAAGCTCGCTTTCCCGCGT
CCGCAACATTTTTCAAATGATGAAGGAGCGGGCGGAAGACTATGTGGTGG
GAACCACGGGGACGGCGGCGGCGACGGCAGTGGGAGGAGCAGCAGCAGGA
GACAGGACGCACCACGAGAAGCGTCGCTCCAGCGCGGCAGAGGAGGAGCA
GCCAGCATCGCGAGAAGAGGAGGCCCAGCAGCATAAACTGCAGCCAACGC
AGCAACGACCCAAGGAACAGCCGCGGCCTGTGCCGCCGGTCGACAGCTTG
CCACGACCCATGACTGTGCCCAGATCAACGCCTAAGAGTACCCCCGCGGC
AGCTGCAGCAGTGTCTCGACCATCCCAGCCCGTGCCGCAAGGCGAGGCTA
AGGAGGAGGGGGATTCAGTACCGCAATTAAAGGAGAAGGCGGGCATGGGA
CCCCCAGATCCGGTGGGGCAAATAGCGAGGGAGGGTGGGGGGGCTGCGCA
TAAGAGGAGGAACAGTTACTAG

Synonyms

Publications