jgi.p|Nanoce1779_2|582495, mRNA_3533 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582495
Unique Name	mRNA_3533
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2275
Alignment location	scaffold_6:592253..594527 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582581
Track	FilteredModels2
ProteinId	582495

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:592253..594527 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582495	gene_3533	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582495	mRNA_3533-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3533	CDS_3533	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:592253..594527+
coding sequence from alignment at scaffold_6:592253..594527+

mRNA sequence

>mRNA_3533 ID=mRNA_3533|Name=jgi.p|Nanoce1779_2|582495|organism=Nannochloropsis oceanica|type=mRNA|length=2275bp
ACAGGACTATGGTGTGGGTAAGTCGGCGGCGCCTGACCCTGGGCGTTGCT
GTCTATATCTACATGGTTTACTGCTTTCTATCTCCAGGAGTCGTGGCGGG
CGGCTTCTTGCAGCAGGAGATGGGGAAAGTCAAAGAGGAAAACGAGGAGC
AAAACATGACCACGCTCGAGTACATCCGCGACAACCTAGAAGACTTGCAA
GAGGACATTCAAGAAGGTGTGCGAGGTGTGAATGATCGAGCGGCGCGCGC
CAGAAAGCGGGCATTGGATTTGCATGAACGATGGAGCGATGCAATGGACG
ATGCAGTGGACGACGTACGCGAATACTTGGGCCTGGAAAAACCTGTTCTG
AATCGAGTGGAAGATCGCCTGGAGCTGGTGCTGAAGAGGACAGATTTCGC
TCGATACGTGATGAAAGGCGGGGTCGGGCTGGGCATGGTCTTCTTCGGAC
TGCACTTCTCCCACCTAGTCGTTTTCATGCATACCCTGCGCGTGACGGGC
CTCCCCGTCATCCAACGTGCTTGGTGGGAGTTCCTTGAGATGTACGCTGT
GGCCCGCCAAACGATCAAAAAGGAATATCCCAATATGGCACAAACTAAGA
AGTTGCTTCAAGCTGTGCATTTTGAGATTCGGTCGACCCGCAAAATTCTC
CACGAGGCCGCCGAGGCTGCCAAGGACGGCACGGTCACAAAGGCCGAAGC
CCGCGAAGCCGTGCGTAAGGCTAAAATCAACTTACGGGAGCTTAATGAGA
AGTCATGGTTGTTGAACCAGGCATTTTCTTCCATGCACGCCATGGCGGCG
GCAGTTGATTTTCGGAGAATTAAGGACTTGGCGGGTGGGATTTATACTTC
GGCCTTGGCATGTTTTGCCACTGCGTCCTCGTCTACCCTGCGAGGCCTCT
CTATTGGTTTTGACCTTGCTTCATTGATTTCTGGACATATCGACAATGCC
ATTCGCGCCCTCACCAAACGCATGCATCGATTGGAAGTATTTCGATACCT
GCCCAAGGAGACACAGAAGCTGCTCGGGCTGACAGTGTCCCTCGTTTCGG
TTGTCAAAGGACTGATTGTCGTTCATTTTGTGGTGCCCCGCCTCACGCTC
GCCGTATCTTCCTCGGCCTTAGGCGCTCTGTGGATAACCGACACGATAAT
GTATGTGACAGATGCCGGAGCGGGAAGGACAGGCAAGGGGCCCATGAACG
ACAACGGTCTATTCTTGCTCTCCAATTTATTTTGGACTGCGGCTGGCTTT
GCCTTTCAAACCAAACGCGCTGGGGAGGAAATGCCTCGCTTCTTCCGGAT
CCTATTCTATCCGGTCTTGTGTCTGGAGAAGTTTTTACATTCCTTGGACG
AGGTATTGGGCTCGAGTCGTGATAAGATTGAACAACTGATCACAAAACGC
AAACATTCTTCGTTAACCCAAGGGGAATGTGTAGCGGCGGGAGGCGTGGC
AGGGGCGACACTCCTGCAGGCCGCTGAAGCAGGTGCGAAATTGGATGAGA
GGGAGGGATCGTACGAGAGGAGAGGAAGAGGGGGCTTCTTGGGCGTAATT
ACGCGTTTTTGGCAGAAACCACCGTCACGGCAGGAGTAAAAAGTGCATTG
GTAGGTAGATGTCATGCAGCAGCCGAGAAAGGAACTGGCGGTCCAAAATG
CGAAAAGTGGATCTGAGTGAAGACTCATGGGGGAAAAGAACGACATGTGG
GGTTTGCATGTTAGGGAGATACGCGTTAAGGCAATGGATGGTAAAAAAGA
GGGACGAATGCAGGAGGCGCGACATTTAGCCTCCATAATTGGGTTTTAAT
TGAATGAGAGGCTGGTAGCTTGGCGATGTAGAGTTGGGAATAGTAAAATA
TGGAAAAGGAATGCAGCAAGATGAGGCAAATGGAAAGGCTAATGGGAGGA
GGGGGGCGTGTTTATAGAAGGGAAGAAATGTATTGAGGTAAAATATTCGG
CAAGAGCTAAGGCGTGGTTGTATATGCGAGATGAAGCAGGATGAGAGGGG
AACAGGGAGAAGAAGGGGGCAGGATGGCAGATGGAAGGCCCCTGAATATA
GAAACGGAAGAGGGCAGGAGTCGCGTGGAGCATTGATTGGCGGGCAACGG
ACACGACGTGAGAAGGGAGGCAGAGGGCGGTCGTTATGTATGTATACAAA
CATGACCCAAATTCAAAGAGACCAAAATGATCAAAAGGACTCAAAAATCA
AAAAAAAAGGAAAAGCAAGCAAGCACTGACAAACTGAGGAGCATCCTCGA
CTCTGTTGATCGACCTAGGATGGGA

protein sequence of jgi.p|Nanoce1779_2|582495

>mRNA_3533-protein ID=mRNA_3533-protein|Name=jgi.p|Nanoce1779_2|582495|organism=Nannochloropsis oceanica|type=polypeptide|length=527bp
MVWVSRRRLTLGVAVYIYMVYCFLSPGVVAGGFLQQEMGKVKEENEEQNM
TTLEYIRDNLEDLQEDIQEGVRGVNDRAARARKRALDLHERWSDAMDDAV
DDVREYLGLEKPVLNRVEDRLELVLKRTDFARYVMKGGVGLGMVFFGLHF
SHLVVFMHTLRVTGLPVIQRAWWEFLEMYAVARQTIKKEYPNMAQTKKLL
QAVHFEIRSTRKILHEAAEAAKDGTVTKAEAREAVRKAKINLRELNEKSW
LLNQAFSSMHAMAAAVDFRRIKDLAGGIYTSALACFATASSSTLRGLSIG
FDLASLISGHIDNAIRALTKRMHRLEVFRYLPKETQKLLGLTVSLVSVVK
GLIVVHFVVPRLTLAVSSSALGALWITDTIMYVTDAGAGRTGKGPMNDNG
LFLLSNLFWTAAGFAFQTKRAGEEMPRFFRILFYPVLCLEKFLHSLDEVL
GSSRDKIEQLITKRKHSSLTQGECVAAGGVAGATLLQAAEAGAKLDEREG
SYERRGRGGFLGVITRFWQKPPSRQE*

mRNA from alignment at scaffold_6:592253..594527+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3533 ID=mRNA_3533|Name=jgi.p|Nanoce1779_2|582495|organism=Nannochloropsis oceanica|type=mRNA|length=2275bp|location=Sequence derived from alignment at scaffold_6:592253..594527+ (Nannochloropsis oceanica)
ACAGGACTATGGTGTGGGTAAGTCGGCGGCGCCTGACCCTGGGCGTTGCT
GTCTATATCTACATGGTTTACTGCTTTCTATCTCCAGGAGTCGTGGCGGG
CGGCTTCTTGCAGCAGGAGATGGGGAAAGTCAAAGAGGAAAACGAGGAGC
AAAACATGACCACGCTCGAGTACATCCGCGACAACCTAGAAGACTTGCAA
GAGGACATTCAAGAAGGTGTGCGAGGTGTGAATGATCGAGCGGCGCGCGC
CAGAAAGCGGGCATTGGATTTGCATGAACGATGGAGCGATGCAATGGACG
ATGCAGTGGACGACGTACGCGAATACTTGGGCCTGGAAAAACCTGTTCTG
AATCGAGTGGAAGATCGCCTGGAGCTGGTGCTGAAGAGGACAGATTTCGC
TCGATACGTGATGAAAGGCGGGGTCGGGCTGGGCATGGTCTTCTTCGGAC
TGCACTTCTCCCACCTAGTCGTTTTCATGCATACCCTGCGCGTGACGGGC
CTCCCCGTCATCCAACGTGCTTGGTGGGAGTTCCTTGAGATGTACGCTGT
GGCCCGCCAAACGATCAAAAAGGAATATCCCAATATGGCACAAACTAAGA
AGTTGCTTCAAGCTGTGCATTTTGAGATTCGGTCGACCCGCAAAATTCTC
CACGAGGCCGCCGAGGCTGCCAAGGACGGCACGGTCACAAAGGCCGAAGC
CCGCGAAGCCGTGCGTAAGGCTAAAATCAACTTACGGGAGCTTAATGAGA
AGTCATGGTTGTTGAACCAGGCATTTTCTTCCATGCACGCCATGGCGGCG
GCAGTTGATTTTCGGAGAATTAAGGACTTGGCGGGTGGGATTTATACTTC
GGCCTTGGCATGTTTTGCCACTGCGTCCTCGTCTACCCTGCGAGGCCTCT
CTATTGGTTTTGACCTTGCTTCATTGATTTCTGGACATATCGACAATGCC
ATTCGCGCCCTCACCAAACGCATGCATCGATTGGAAGTATTTCGATACCT
GCCCAAGGAGACACAGAAGCTGCTCGGGCTGACAGTGTCCCTCGTTTCGG
TTGTCAAAGGACTGATTGTCGTTCATTTTGTGGTGCCCCGCCTCACGCTC
GCCGTATCTTCCTCGGCCTTAGGCGCTCTGTGGATAACCGACACGATAAT
GTATGTGACAGATGCCGGAGCGGGAAGGACAGGCAAGGGGCCCATGAACG
ACAACGGTCTATTCTTGCTCTCCAATTTATTTTGGACTGCGGCTGGCTTT
GCCTTTCAAACCAAACGCGCTGGGGAGGAAATGCCTCGCTTCTTCCGGAT
CCTATTCTATCCGGTCTTGTGTCTGGAGAAGTTTTTACATTCCTTGGACG
AGGTATTGGGCTCGAGTCGTGATAAGATTGAACAACTGATCACAAAACGC
AAACATTCTTCGTTAACCCAAGGGGAATGTGTAGCGGCGGGAGGCGTGGC
AGGGGCGACACTCCTGCAGGCCGCTGAAGCAGGTGCGAAATTGGATGAGA
GGGAGGGATCGTACGAGAGGAGAGGAAGAGGGGGCTTCTTGGGCGTAATT
ACGCGTTTTTGGCAGAAACCACCGTCACGGCAGGAGTAAAAAGTGCATTG
GTAGGTAGATGTCATGCAGCAGCCGAGAAAGGAACTGGCGGTCCAAAATG
CGAAAAGTGGATCTGAGTGAAGACTCATGGGGGAAAAGAACGACATGTGG
GGTTTGCATGTTAGGGAGATACGCGTTAAGGCAATGGATGGTAAAAAAGA
GGGACGAATGCAGGAGGCGCGACATTTAGCCTCCATAATTGGGTTTTAAT
TGAATGAGAGGCTGGTAGCTTGGCGATGTAGAGTTGGGAATAGTAAAATA
TGGAAAAGGAATGCAGCAAGATGAGGCAAATGGAAAGGCTAATGGGAGGA
GGGGGGCGTGTTTATAGAAGGGAAGAAATGTATTGAGGTAAAATATTCGG
CAAGAGCTAAGGCGTGGTTGTATATGCGAGATGAAGCAGGATGAGAGGGG
AACAGGGAGAAGAAGGGGGCAGGATGGCAGATGGAAGGCCCCTGAATATA
GAAACGGAAGAGGGCAGGAGTCGCGTGGAGCATTGATTGGCGGGCAACGG
ACACGACGTGAGAAGGGAGGCAGAGGGCGGTCGTTATGTATGTATACAAA
CATGACCCAAATTCAAAGAGACCAAAATGATCAAAAGGACTCAAAAATCA
AAAAAAAAGGAAAAGCAAGCAAGCACTGACAAACTGAGGAGCATCCTCGA
CTCTGTTGATCGACCTAGGATGGGA

Coding sequence (CDS) from alignment at scaffold_6:592253..594527+

>mRNA_3533 ID=mRNA_3533|Name=jgi.p|Nanoce1779_2|582495|organism=Nannochloropsis oceanica|type=CDS|length=1581bp|location=Sequence derived from alignment at scaffold_6:592253..594527+ (Nannochloropsis oceanica)
ATGGTGTGGGTAAGTCGGCGGCGCCTGACCCTGGGCGTTGCTGTCTATAT
CTACATGGTTTACTGCTTTCTATCTCCAGGAGTCGTGGCGGGCGGCTTCT
TGCAGCAGGAGATGGGGAAAGTCAAAGAGGAAAACGAGGAGCAAAACATG
ACCACGCTCGAGTACATCCGCGACAACCTAGAAGACTTGCAAGAGGACAT
TCAAGAAGGTGTGCGAGGTGTGAATGATCGAGCGGCGCGCGCCAGAAAGC
GGGCATTGGATTTGCATGAACGATGGAGCGATGCAATGGACGATGCAGTG
GACGACGTACGCGAATACTTGGGCCTGGAAAAACCTGTTCTGAATCGAGT
GGAAGATCGCCTGGAGCTGGTGCTGAAGAGGACAGATTTCGCTCGATACG
TGATGAAAGGCGGGGTCGGGCTGGGCATGGTCTTCTTCGGACTGCACTTC
TCCCACCTAGTCGTTTTCATGCATACCCTGCGCGTGACGGGCCTCCCCGT
CATCCAACGTGCTTGGTGGGAGTTCCTTGAGATGTACGCTGTGGCCCGCC
AAACGATCAAAAAGGAATATCCCAATATGGCACAAACTAAGAAGTTGCTT
CAAGCTGTGCATTTTGAGATTCGGTCGACCCGCAAAATTCTCCACGAGGC
CGCCGAGGCTGCCAAGGACGGCACGGTCACAAAGGCCGAAGCCCGCGAAG
CCGTGCGTAAGGCTAAAATCAACTTACGGGAGCTTAATGAGAAGTCATGG
TTGTTGAACCAGGCATTTTCTTCCATGCACGCCATGGCGGCGGCAGTTGA
TTTTCGGAGAATTAAGGACTTGGCGGGTGGGATTTATACTTCGGCCTTGG
CATGTTTTGCCACTGCGTCCTCGTCTACCCTGCGAGGCCTCTCTATTGGT
TTTGACCTTGCTTCATTGATTTCTGGACATATCGACAATGCCATTCGCGC
CCTCACCAAACGCATGCATCGATTGGAAGTATTTCGATACCTGCCCAAGG
AGACACAGAAGCTGCTCGGGCTGACAGTGTCCCTCGTTTCGGTTGTCAAA
GGACTGATTGTCGTTCATTTTGTGGTGCCCCGCCTCACGCTCGCCGTATC
TTCCTCGGCCTTAGGCGCTCTGTGGATAACCGACACGATAATGTATGTGA
CAGATGCCGGAGCGGGAAGGACAGGCAAGGGGCCCATGAACGACAACGGT
CTATTCTTGCTCTCCAATTTATTTTGGACTGCGGCTGGCTTTGCCTTTCA
AACCAAACGCGCTGGGGAGGAAATGCCTCGCTTCTTCCGGATCCTATTCT
ATCCGGTCTTGTGTCTGGAGAAGTTTTTACATTCCTTGGACGAGGTATTG
GGCTCGAGTCGTGATAAGATTGAACAACTGATCACAAAACGCAAACATTC
TTCGTTAACCCAAGGGGAATGTGTAGCGGCGGGAGGCGTGGCAGGGGCGA
CACTCCTGCAGGCCGCTGAAGCAGGTGCGAAATTGGATGAGAGGGAGGGA
TCGTACGAGAGGAGAGGAAGAGGGGGCTTCTTGGGCGTAATTACGCGTTT
TTGGCAGAAACCACCGTCACGGCAGGAGTAA

Synonyms

Publications