jgi.p|Nanoce1779_2|582493, mRNA_3532 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582493
Unique Name	mRNA_3532
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2737
Alignment location	scaffold_6:589413..592149 -

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Properties


Property Name	Value
TranscriptId	582579
Track	FilteredModels2
ProteinId	582493

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:589413..592149 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582493	gene_3532	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582493	mRNA_3532-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3532	CDS_3532	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:589413..592149-
coding sequence from alignment at scaffold_6:589413..592149-

mRNA sequence

>mRNA_3532 ID=mRNA_3532|Name=jgi.p|Nanoce1779_2|582493|organism=Nannochloropsis oceanica|type=mRNA|length=2737bp
ATGTCCACACCACGCGTAGTACGTTTAAGGTGCCTTGAGGTTGGCTGCTG
CGTGCCCTGACGGTCTTTTCGTCTTCATCCGTCACGGGCATGCGTTTCGG
CGATCAAGTCCATTCGGGAAATTCCACCACCACGTTCCCTCATCCACGCT
CCTTCACCACAATCACAACAGGCAATGCAAGATGGACAACCCCAGAGGAA
AAAAAACACTGGGAAGAATGACGTTCCCGCTACCAAGGCCGACTCACGGC
CCAACACCTCCTATCCTGACTTGTGGGGTGCTTCGGCGCAAATCCCCAGA
CATGCGCACCGTGAGCGGGTCTTTAACCTGGCATTTGACGCTTCTGGGAA
CGATTGGATGGCCTCGGCCTCAGAGGCAAATGAAGTGAAGCTTTGGAACG
TGGCCAGCACAGGGATCGCGCCGATTCTGTCGACAACTCTGTCGCATAAG
GCAGAGGTGCTGCGGGTTGCCTGGGGACAGCATCAGGGGAAGGGCGCCGA
TGGAGTCCCCAAGGACCATCAATCTTCATGGCTGGCCACAGGTAGCGCGG
CGGGTGGCGTGCGCGTCTATTTTGTTTCATCAGAGCAAGGAAGCGATGAA
GACGAAGAAGGCAATTCTTGCGAAGCGGCTTCGGCCTCGACCACTGCCAC
TTTAGTGACGGAATTTGACCACCCCGAAGAAGGCCAACAAATTTACGCTT
TGCAATGGATGGATAATGACATTGACGAAAGAGATGCCAAACGCCTCCTA
TTGACAGCCGCCGATGACAAAGTTTTTTTCTGGGACTTGGAAACGCAAAG
TGTTACAACTAAGTGGTCCTTTGAGCAGCTGCCTCCCGAGCAAGACAAGG
AAGAGAGCAGCAGCACGGTGTACGGTGGAACCAACCGGAACCCTGGTGGT
ATGTGTTATGTATTTGACGCCACTGTTGGTCGTTTATACCCGGGTCAGTC
TAGCGATGTAGTGTGTTTGGCTTTGAGTGATGGGAGCGTTCGTGTTCTCG
ATCGCCGGGCGGGGGAGGCGGTGGCAACCGTGCGGGGAGTGAATGGGTCT
CACTTGACGGCTTTGTGTTTAAGCGCGGAGGAGGGGATATTGCTGGCGTG
TGAAGGCAAGGGTAATGTTGTTGCATACGACACGCGGACATTTTCTGTGC
GGGCTGTGTTAGAGGGGTGTGGTCGTCCGGTATTTGGTGCGGCGGTGGTG
CCGCGAGGGTTGGCCAAGGAGCATGTCTTGACTGAGAGAAGGAAGGAGGT
GCCCATCGTGATGACGTGGTCAACTGATACCTGTTTACGTTTTTATGAGT
TGGGTGTGGATAACGCGATGATGCGTCATGTGGTGCAGCACCAGAATTTT
CCGATTTATACCGCAGCGTTTAGTCCGGGGCAAGGGCGAAGGCTGGTATT
GGGGGGAGGGATGGGGATGCCAGAGCCGCATAATTCTCATTCACTCGTGC
ACAAGGGTGAAAAGAGGAGGGAAGGAGGGGGAGAAGAAGAAGGAGGAGGA
GTGACTTCGTGTTCTCATGGAGCCGAAGACGAGCACCACCACCATCCTCC
TCACCATCACAATAATGCAGGTGAAACTGTAGTCCCATCATCGCTTTTGT
CGTACCAATTTTCAAAATAAATGGCCCAGGTGGAAAAGAGGAGGAGAAGA
AGATATGAAGATGTGGCAGTCCAATGTAACGTGCTTGCTTTCGTTGATTA
ATGCTCCATTCGATTCCGCTCTTTACCCGTCAATCATCAACGACATCACC
AATTCAACGGTAAAACCCTCGCAACCACAGCACTGCTGCCTTTATCCTTT
CCCTCTCTTCCCGCCGAATCCCTTCCCCCCTTCACCAACCTCTCCCCAAA
CCCTTTAAGCAGTAAACCTCCCAAATTGAGCATCACATCATAGACATACG
CCAGTTCTACCTGCGACGCACTCATTCGCTGAGCATACGCATCCAAACAC
ACCCGCACCACCTGCCAATGCGCACTTTCTGCCGTCATCCGTGGGTTTTC
CCCCTCTCCTCCTTCCCTCCCTTCCACTTTATCATTATAGTACAAAGCCA
ACAACTCCTCAACCAGAGTCCGTTCCGAGCATCGTTGTAAGACATGTGGC
GAACTTAATTCGAGCGGGGCCCGAGCGAAGAGAGCGTCGAGAAGTGTCGA
AGGACGGAGATGGGCTGTAAAACGTTCTTTGGCCAGACCATTAACCGTGA
TGGGGTTTTGTTCGTCTCCGTAAAAAGAGAATTCGCGGAAAGCTTTTAAT
TCTAGGTAGGGTGCACCGAGCTCTGAGAGCTTGGGATGGATAGACGAGAG
GGATGTCTCGAGTGTGGCCATGTCAGTAGTTAATTTTGTCTTGCCTGCTT
CGTTCAGCGGGCGGAGCAACGCGGCATGGCTCACGTACAGACGCAACAAC
CGACTCGTCAGCCACTTAAATGACCGAATAACAAAATCTGCCTGTAAAGG
AAACTTGCTTAAATGATGCTTCCGCATTCCTGTCACCGCCATCTGAAACG
ATGTGATGAACCTCGAATTCCCTCCCCCTCCTTGCCCGTCACTTTCTTCC
TGCTGCTGCTCCTGCCGCTGTTGCTGCTGCCGACCCGGTGCATAATTCTC
CAAATGCATCTCCGCCAAAATCCCCCCAAGCTCCGCCACGATATCCATCA
TATACGGATGCAAAAAGCGTGTCACTGCCAACGACTCCAAGGCCATCACC
GCTTCCATCAGCTGCCCTTCTTCCCCCCGCCCTTCCT

protein sequence of jgi.p|Nanoce1779_2|582493

>mRNA_3532-protein ID=mRNA_3532-protein|Name=jgi.p|Nanoce1779_2|582493|organism=Nannochloropsis oceanica|type=polypeptide|length=482bp
MQDGQPQRKKNTGKNDVPATKADSRPNTSYPDLWGASAQIPRHAHRERVF
NLAFDASGNDWMASASEANEVKLWNVASTGIAPILSTTLSHKAEVLRVAW
GQHQGKGADGVPKDHQSSWLATGSAAGGVRVYFVSSEQGSDEDEEGNSCE
AASASTTATLVTEFDHPEEGQQIYALQWMDNDIDERDAKRLLLTAADDKV
FFWDLETQSVTTKWSFEQLPPEQDKEESSSTVYGGTNRNPGGMCYVFDAT
VGRLYPGQSSDVVCLALSDGSVRVLDRRAGEAVATVRGVNGSHLTALCLS
AEEGILLACEGKGNVVAYDTRTFSVRAVLEGCGRPVFGAAVVPRGLAKEH
VLTERRKEVPIVMTWSTDTCLRFYELGVDNAMMRHVVQHQNFPIYTAAFS
PGQGRRLVLGGGMGMPEPHNSHSLVHKGEKRREGGGEEEGGGVTSCSHGA
EDEHHHHPPHHHNNAGETVVPSSLLSYQFSK*

mRNA from alignment at scaffold_6:589413..592149-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3532 ID=mRNA_3532|Name=jgi.p|Nanoce1779_2|582493|organism=Nannochloropsis oceanica|type=mRNA|length=2737bp|location=Sequence derived from alignment at scaffold_6:589413..592149- (Nannochloropsis oceanica)
ATGTCCACACCACGCGTAGTACGTTTAAGGTGCCTTGAGGTTGGCTGCTG
CGTGCCCTGACGGTCTTTTCGTCTTCATCCGTCACGGGCATGCGTTTCGG
CGATCAAGTCCATTCGGGAAATTCCACCACCACGTTCCCTCATCCACGCT
CCTTCACCACAATCACAACAGGCAATGCAAGATGGACAACCCCAGAGGAA
AAAAAACACTGGGAAGAATGACGTTCCCGCTACCAAGGCCGACTCACGGC
CCAACACCTCCTATCCTGACTTGTGGGGTGCTTCGGCGCAAATCCCCAGA
CATGCGCACCGTGAGCGGGTCTTTAACCTGGCATTTGACGCTTCTGGGAA
CGATTGGATGGCCTCGGCCTCAGAGGCAAATGAAGTGAAGCTTTGGAACG
TGGCCAGCACAGGGATCGCGCCGATTCTGTCGACAACTCTGTCGCATAAG
GCAGAGGTGCTGCGGGTTGCCTGGGGACAGCATCAGGGGAAGGGCGCCGA
TGGAGTCCCCAAGGACCATCAATCTTCATGGCTGGCCACAGGTAGCGCGG
CGGGTGGCGTGCGCGTCTATTTTGTTTCATCAGAGCAAGGAAGCGATGAA
GACGAAGAAGGCAATTCTTGCGAAGCGGCTTCGGCCTCGACCACTGCCAC
TTTAGTGACGGAATTTGACCACCCCGAAGAAGGCCAACAAATTTACGCTT
TGCAATGGATGGATAATGACATTGACGAAAGAGATGCCAAACGCCTCCTA
TTGACAGCCGCCGATGACAAAGTTTTTTTCTGGGACTTGGAAACGCAAAG
TGTTACAACTAAGTGGTCCTTTGAGCAGCTGCCTCCCGAGCAAGACAAGG
AAGAGAGCAGCAGCACGGTGTACGGTGGAACCAACCGGAACCCTGGTGGT
ATGTGTTATGTATTTGACGCCACTGTTGGTCGTTTATACCCGGGTCAGTC
TAGCGATGTAGTGTGTTTGGCTTTGAGTGATGGGAGCGTTCGTGTTCTCG
ATCGCCGGGCGGGGGAGGCGGTGGCAACCGTGCGGGGAGTGAATGGGTCT
CACTTGACGGCTTTGTGTTTAAGCGCGGAGGAGGGGATATTGCTGGCGTG
TGAAGGCAAGGGTAATGTTGTTGCATACGACACGCGGACATTTTCTGTGC
GGGCTGTGTTAGAGGGGTGTGGTCGTCCGGTATTTGGTGCGGCGGTGGTG
CCGCGAGGGTTGGCCAAGGAGCATGTCTTGACTGAGAGAAGGAAGGAGGT
GCCCATCGTGATGACGTGGTCAACTGATACCTGTTTACGTTTTTATGAGT
TGGGTGTGGATAACGCGATGATGCGTCATGTGGTGCAGCACCAGAATTTT
CCGATTTATACCGCAGCGTTTAGTCCGGGGCAAGGGCGAAGGCTGGTATT
GGGGGGAGGGATGGGGATGCCAGAGCCGCATAATTCTCATTCACTCGTGC
ACAAGGGTGAAAAGAGGAGGGAAGGAGGGGGAGAAGAAGAAGGAGGAGGA
GTGACTTCGTGTTCTCATGGAGCCGAAGACGAGCACCACCACCATCCTCC
TCACCATCACAATAATGCAGGTGAAACTGTAGTCCCATCATCGCTTTTGT
CGTACCAATTTTCAAAATAAATGGCCCAGGTGGAAAAGAGGAGGAGAAGA
AGATATGAAGATGTGGCAGTCCAATGTAACGTGCTTGCTTTCGTTGATTA
ATGCTCCATTCGATTCCGCTCTTTACCCGTCAATCATCAACGACATCACC
AATTCAACGGTAAAACCCTCGCAACCACAGCACTGCTGCCTTTATCCTTT
CCCTCTCTTCCCGCCGAATCCCTTCCCCCCTTCACCAACCTCTCCCCAAA
CCCTTTAAGCAGTAAACCTCCCAAATTGAGCATCACATCATAGACATACG
CCAGTTCTACCTGCGACGCACTCATTCGCTGAGCATACGCATCCAAACAC
ACCCGCACCACCTGCCAATGCGCACTTTCTGCCGTCATCCGTGGGTTTTC
CCCCTCTCCTCCTTCCCTCCCTTCCACTTTATCATTATAGTACAAAGCCA
ACAACTCCTCAACCAGAGTCCGTTCCGAGCATCGTTGTAAGACATGTGGC
GAACTTAATTCGAGCGGGGCCCGAGCGAAGAGAGCGTCGAGAAGTGTCGA
AGGACGGAGATGGGCTGTAAAACGTTCTTTGGCCAGACCATTAACCGTGA
TGGGGTTTTGTTCGTCTCCGTAAAAAGAGAATTCGCGGAAAGCTTTTAAT
TCTAGGTAGGGTGCACCGAGCTCTGAGAGCTTGGGATGGATAGACGAGAG
GGATGTCTCGAGTGTGGCCATGTCAGTAGTTAATTTTGTCTTGCCTGCTT
CGTTCAGCGGGCGGAGCAACGCGGCATGGCTCACGTACAGACGCAACAAC
CGACTCGTCAGCCACTTAAATGACCGAATAACAAAATCTGCCTGTAAAGG
AAACTTGCTTAAATGATGCTTCCGCATTCCTGTCACCGCCATCTGAAACG
ATGTGATGAACCTCGAATTCCCTCCCCCTCCTTGCCCGTCACTTTCTTCC
TGCTGCTGCTCCTGCCGCTGTTGCTGCTGCCGACCCGGTGCATAATTCTC
CAAATGCATCTCCGCCAAAATCCCCCCAAGCTCCGCCACGATATCCATCA
TATACGGATGCAAAAAGCGTGTCACTGCCAACGACTCCAAGGCCATCACC
GCTTCCATCAGCTGCCCTTCTTCCCCCCGCCCTTCCT

Coding sequence (CDS) from alignment at scaffold_6:589413..592149-

>mRNA_3532 ID=mRNA_3532|Name=jgi.p|Nanoce1779_2|582493|organism=Nannochloropsis oceanica|type=CDS|length=1446bp|location=Sequence derived from alignment at scaffold_6:589413..592149- (Nannochloropsis oceanica)
ATGCAAGATGGACAACCCCAGAGGAAAAAAAACACTGGGAAGAATGACGT
TCCCGCTACCAAGGCCGACTCACGGCCCAACACCTCCTATCCTGACTTGT
GGGGTGCTTCGGCGCAAATCCCCAGACATGCGCACCGTGAGCGGGTCTTT
AACCTGGCATTTGACGCTTCTGGGAACGATTGGATGGCCTCGGCCTCAGA
GGCAAATGAAGTGAAGCTTTGGAACGTGGCCAGCACAGGGATCGCGCCGA
TTCTGTCGACAACTCTGTCGCATAAGGCAGAGGTGCTGCGGGTTGCCTGG
GGACAGCATCAGGGGAAGGGCGCCGATGGAGTCCCCAAGGACCATCAATC
TTCATGGCTGGCCACAGGTAGCGCGGCGGGTGGCGTGCGCGTCTATTTTG
TTTCATCAGAGCAAGGAAGCGATGAAGACGAAGAAGGCAATTCTTGCGAA
GCGGCTTCGGCCTCGACCACTGCCACTTTAGTGACGGAATTTGACCACCC
CGAAGAAGGCCAACAAATTTACGCTTTGCAATGGATGGATAATGACATTG
ACGAAAGAGATGCCAAACGCCTCCTATTGACAGCCGCCGATGACAAAGTT
TTTTTCTGGGACTTGGAAACGCAAAGTGTTACAACTAAGTGGTCCTTTGA
GCAGCTGCCTCCCGAGCAAGACAAGGAAGAGAGCAGCAGCACGGTGTACG
GTGGAACCAACCGGAACCCTGGTGGTATGTGTTATGTATTTGACGCCACT
GTTGGTCGTTTATACCCGGGTCAGTCTAGCGATGTAGTGTGTTTGGCTTT
GAGTGATGGGAGCGTTCGTGTTCTCGATCGCCGGGCGGGGGAGGCGGTGG
CAACCGTGCGGGGAGTGAATGGGTCTCACTTGACGGCTTTGTGTTTAAGC
GCGGAGGAGGGGATATTGCTGGCGTGTGAAGGCAAGGGTAATGTTGTTGC
ATACGACACGCGGACATTTTCTGTGCGGGCTGTGTTAGAGGGGTGTGGTC
GTCCGGTATTTGGTGCGGCGGTGGTGCCGCGAGGGTTGGCCAAGGAGCAT
GTCTTGACTGAGAGAAGGAAGGAGGTGCCCATCGTGATGACGTGGTCAAC
TGATACCTGTTTACGTTTTTATGAGTTGGGTGTGGATAACGCGATGATGC
GTCATGTGGTGCAGCACCAGAATTTTCCGATTTATACCGCAGCGTTTAGT
CCGGGGCAAGGGCGAAGGCTGGTATTGGGGGGAGGGATGGGGATGCCAGA
GCCGCATAATTCTCATTCACTCGTGCACAAGGGTGAAAAGAGGAGGGAAG
GAGGGGGAGAAGAAGAAGGAGGAGGAGTGACTTCGTGTTCTCATGGAGCC
GAAGACGAGCACCACCACCATCCTCCTCACCATCACAATAATGCAGGTGA
AACTGTAGTCCCATCATCGCTTTTGTCGTACCAATTTTCAAAATAA

Synonyms

Publications