jgi.p|Nanoce1779_2|669488, mRNA_3528 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|669488
Unique Name	mRNA_3528
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1681
Alignment location	scaffold_6:577585..579526 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	669574
Track	FilteredModels2
ProteinId	669488

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:577585..579526 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669488	gene_3528	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669488	mRNA_3528-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3528	CDS_3528	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:577585..579526-
coding sequence from alignment at scaffold_6:577585..579526-

mRNA sequence

>mRNA_3528 ID=mRNA_3528|Name=jgi.p|Nanoce1779_2|669488|organism=Nannochloropsis oceanica|type=mRNA|length=1681bp
CCTTGCCCCATACGCGATAATGGGCTTTGCCTGCCCTGGACGCGTCGAGC
CCGCAGAAAAGCCATCCAAGACCTTCTGCTTCCCCGCGTACACCGCCATG
TGCGCACGCGCCCGTGTCTTCTCCAGCACTCCAGCACTGTAGCGCCAGCC
GAAATAAGGATTTGTAAAATCAGGGCTCGCACGCCAATTAATCCCACATC
GAATGCAACGAGGTTTTTGACCGAACCCGGCACGCAAAACATCAACATAA
TGTCGCTTATATCGACCCCATCCGATAGATTGATTTCAGAACTCGTCCGA
GTTCGAGTTCGAGTTCGAGTTCGATCGGCCGCGCTCAACGCCAGGGCAAA
GCAATTCAACGACATGTCGCACAGGGCTCTTCCAGCGACTATGGGGCCTG
ATCTGGCGGCCGCACTGGATTTTGATGAAGTGAAGCTGGAGGACGGGTTG
GATCTCGGCGCCATGGAGTTGTGGTGGAAAGTTCCTGAGAACTGTCCTGC
CCTCGCCATCGTGGTCATATACTATCTCTGCATTCCCGCCTCATCGTCTG
CTTTGAAGCGGTTGTTATCACAAACGGGGCTGATCCAGTCGAAGCTGCGG
AATCGGACGATCGCGAAACTCATGTATCTTCACCCGCGCCAACTGGAACG
ACAGTCTCTGCCAAGTATGGCTCTAGGAGAAGACGGCTGGGAGGAGAGCA
AGGATGGTAAGGAGGAGGAAGAGAACGAGGATGAGATGATACGGTGGGAA
GAGATGGAGGAAGGAACTGCGGGGAAGTTCGAAGTTTTTGGGAAGAATAA
TGAAGTCGCGAAGACATCATCGCCGTCTGTCGGCGAGGACAAGGAAGGTG
TAGTAGGGTATCTCATCGACCTGCCTGATGCCTCAGTGGGGCCATTGTTT
GGTAGGCTGGAGGCCTTTAACGGTTTGCTATCCCGCGCGGACCGTTTGAA
GACCCTAGACATCTGTGTCGCTTGAAAGGAGCAGCACCTCACTTCCACCA
CATCACGCAGCATCATAACAGCAGCAACACGTGCCAAGACCACAGCACTA
TCTAAAACAAGAGGCATTCACAAATAATGGCGCGTCGTAGCTTGTCGCAA
AATTTGCCGAACTTGGTCAAGGGAGGCTGCACCGTAGGGGCCGTCACTTA
TCAATCCGCTGCGGCTCGTGCGTACCACGACGAAGCAGATGATGCTTCTG
TTGGTGGGGTCGGCCGCGACTCGACTGTTTTGACGGGCAGCAGTACTAGC
AACAACTCCTCCGGGCGAGCGGAAGAAGTGGTATTGCAAAGGGGTGCCTT
GAAAGTTGCTGGGAGGTCGGCTACTATGGAGCAGGCGTCGTCCTCTTCTT
CCTCGCCGGACCGACATATCAGTGTCCAGGAGGTTGAAGAGGCTTCTCGC
ATTCTTTTTGCACCCCAAGGCACCGCTGCCACTGCAGCCGTAGCGCATAG
TCACCACCATCACAACCACCATGATACTGTGGCCTCGTCGTCGTTTCGGG
AGTCGAACGAGTTGTTGTCTGGCATGTCTGCCCGGGGAGGAGGACGACGA
ACCGCTGAAACTTCTGATTCTGTGGAAGAAGAAGACCTAGCCTGCAAGGA
CAAAGGGAGCATCTCACCGTCGACTCCATCCATATTCCGTGTACATCGCC
AACCCTCCCCTTCTTGCTCGTCTTCCCCTGC

protein sequence of jgi.p|Nanoce1779_2|669488

>mRNA_3528-protein ID=mRNA_3528-protein|Name=jgi.p|Nanoce1779_2|669488|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MSLISTPSDRLISELVRVRVRVRVRSAALNARAKQFNDMSHRALPATMGP
DLAAALDFDEVKLEDGLDLGAMELWWKVPENCPALAIVVIYYLCIPASSS
ALKRLLSQTGLIQSKLRNRTIAKLMYLHPRQLERQSLPSMALGEDGWEES
KDGKEEEENEDEMIRWEEMEEGTAGKFEVFGKNNEVAKTSSPSVGEDKEG
VVGYLIDLPDASVGPLFGRLEAFNGLLSRADRLKTLDICVA*

mRNA from alignment at scaffold_6:577585..579526-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3528 ID=mRNA_3528|Name=jgi.p|Nanoce1779_2|669488|organism=Nannochloropsis oceanica|type=mRNA|length=1942bp|location=Sequence derived from alignment at scaffold_6:577585..579526- (Nannochloropsis oceanica)
CCTTGCCCCATACGCGATAATGGGCTTTGCCTGCCCTGGACGCGTCGAGC
CCGCAGAAAAGCCATCCAAGACCTTCTGCTTCCCCGCGTACACCGCCATG
TGCGCACGCGCCCGTGTCTTCTCCAGCACTCCAGCACTGTAGCGCCAGCC
GAAATAAGGATTTGTAAAATCAGGGCTCGCACGCCAATTAATCCCACATC
GAATGCAACGAGGTTTTTGACCGAACCCGGCACGCAAAACATCAACATAA
TGTCGCTTATATCGACCCCATCCGATAGATTGATTTCAGAACTCGTCCGA
GTTCGAGTTCGAGTTCGAGTTCGATCGGCCGCGCTCAACGCCAGGGCAAA
GCAATTCAACGACATGTCGCACAGGGCTCTTCCAGCGACTATGGGGCCTG
ATCTGGCGGCCGCACTGGATTTTGATGAAGTGAAGCTGGAGGACGGGTTG
GATGTGAGGTCGGAGACAAGTACCTCCGCAAAGAAGTGGCGAACATAGGC
CCCAACGAGCTCGGCGCCATGGAGTTGTGGTGGAAAGTTCCTGAGAACTG
TCCTGCCCTCGCCATCGTGGTCATATACTATCTCTGCATTCCCGCCTCAT
CGTCTGCTTTGAAGCGGTTGTTATCACAAACGGGGCTGATCCAGTCGAAG
CTGCGGAATCGGACGATCGCGAAACTCATGTATCTTCACCCGCGCCAACT
GGAACGACAGTCTCTGCCAAGTATGGCTCTAGGAGAAGACGGCTGGGAGG
AGAGCAAGGATGGTAAGGAGGAGGAAGAGAACGAGGATGAGATGATACGG
TGGGAAGAGATGGAGGAAGGAACTGCGGGGAAGTTCGAAGTTTTTGGGAA
GAATAATGAAGTCGCGAAGACATCATCGCCGTCTGTCGGCGAGGTAGCTC
ATGCGGCGTCAATATTGCAATCCTATGCAGAGCCAGCTCCTTGCCACCAC
CATGCAAACGACAGGACAAGGAAGGTGTAGTAGGGTATCTCATCGACCTG
CCTGATGCCTCAGTGGGGCCATTGTTTGGTAGGCTGGAGGTGGGAGGCGA
TGAAACTCGTCCTCCCTCCTCCGCTCCCGGGAAGAACTGTAGCAAGCACA
AAATCATGGAGCTCTTCCCCGCCGTCCTTACAGTCACCCTCACTTCCCCT
TACCCTTCTACAACTAGTCACAGGCCTTTAACGGTTTGCTATCCCGCGCG
GACCGTTTGAAGACCCTAGACATCTGTGTCGCTTGAAAGGAGCAGCACCT
CACTTCCACCACATCACGCAGCATCATAACAGCAGCAACACGTGCCAAGA
CCACAGCACTATCTAAAACAAGAGGCATTCACAAATAATGGCGCGTCGTA
GCTTGTCGCAAAATTTGCCGAACTTGGTCAAGGGAGGCTGCACCGTAGGG
GCCGTCACTTATCAATCCGCTGCGGCTCGTGCGTACCACGACGAAGCAGA
TGATGCTTCTGTTGGTGGGGTCGGCCGCGACTCGACTGTTTTGACGGGCA
GCAGTACTAGCAACAACTCCTCCGGGCGAGCGGAAGAAGTGGTATTGCAA
AGGGGTGCCTTGAAAGTTGCTGGGAGGTCGGCTACTATGGAGCAGGCGTC
GTCCTCTTCTTCCTCGCCGGACCGACATATCAGTGTCCAGGAGGTTGAAG
AGGCTTCTCGCATTCTTTTTGCACCCCAAGGCACCGCTGCCACTGCAGCC
GTAGCGCATAGTCACCACCATCACAACCACCATGATACTGTGGCCTCGTC
GTCGTTTCGGGAGTCGAACGAGTTGTTGTCTGGCATGTCTGCCCGGGGAG
GAGGACGACGAACCGCTGAAACTTCTGATTCTGTGGAAGAAGAAGACCTA
GCCTGCAAGGACAAAGGGAGCATCTCACCGTCGACTCCATCCATATTCCG
TGTACATCGCCAACCCTCCCCTTCTTGCTCGTCTTCCCCTGC

Coding sequence (CDS) from alignment at scaffold_6:577585..579526-

>mRNA_3528 ID=mRNA_3528|Name=jgi.p|Nanoce1779_2|669488|organism=Nannochloropsis oceanica|type=CDS|length=2904bp|location=Sequence derived from alignment at scaffold_6:577585..579526- (Nannochloropsis oceanica)
GCCTTTAACGGTTTGCTATCCCGCGCGGACCGTTTGAAGACCCTAGACAT
CTGTGTCGCTTGAGACAAGGAAGGTGTAGTAGGGTATCTCATCGACCTGC
CTGATGCCTCAGTGGGGCCATTGTTTGGTAGGCTGGAGCTCGGCGCCATG
GAGTTGTGGTGGAAAGTTCCTGAGAACTGTCCTGCCCTCGCCATCGTGGT
CATATACTATCTCTGCATTCCCGCCTCATCGTCTGCTTTGAAGCGGTTGT
TATCACAAACGGGGCTGATCCAGTCGAAGCTGCGGAATCGGACGATCGCG
AAACTCATGTATCTTCACCCGCGCCAACTGGAACGACAGTCTCTGCCAAG
TATGGCTCTAGGAGAAGACGGCTGGGAGGAGAGCAAGGATGGTAAGGAGG
AGGAAGAGAACGAGGATGAGATGATACGGTGGGAAGAGATGGAGGAAGGA
ACTGCGGGGAAGTTCGAAGTTTTTGGGAAGAATAATGAAGTCGCGAAGAC
ATCATCGCCGTCTGTCGGCGAGATGTCGCTTATATCGACCCCATCCGATA
GATTGATTTCAGAACTCGTCCGAGTTCGAGTTCGAGTTCGAGTTCGATCG
GCCGCGCTCAACGCCAGGGCAAAGCAATTCAACGACATGTCGCACAGGGC
TCTTCCAGCGACTATGGGGCCTGATCTGGCGGCCGCACTGGATTTTGATG
AAGTGAAGCTGGAGGACGGGTTGGATGCCTTTAACGGTTTGCTATCCCGC
GCGGACCGTTTGAAGACCCTAGACATCTGTGTCGCTTGAGACAAGGAAGG
TGTAGTAGGGTATCTCATCGACCTGCCTGATGCCTCAGTGGGGCCATTGT
TTGGTAGGCTGGAGCTCGGCGCCATGGAGTTGTGGTGGAAAGTTCCTGAG
AACTGTCCTGCCCTCGCCATCGTGGTCATATACTATCTCTGCATTCCCGC
CTCATCGTCTGCTTTGAAGCGGTTGTTATCACAAACGGGGCTGATCCAGT
CGAAGCTGCGGAATCGGACGATCGCGAAACTCATGTATCTTCACCCGCGC
CAACTGGAACGACAGTCTCTGCCAAGTATGGCTCTAGGAGAAGACGGCTG
GGAGGAGAGCAAGGATGGTAAGGAGGAGGAAGAGAACGAGGATGAGATGA
TACGGTGGGAAGAGATGGAGGAAGGAACTGCGGGGAAGTTCGAAGTTTTT
GGGAAGAATAATGAAGTCGCGAAGACATCATCGCCGTCTGTCGGCGAGAT
GTCGCTTATATCGACCCCATCCGATAGATTGATTTCAGAACTCGTCCGAG
TTCGAGTTCGAGTTCGAGTTCGATCGGCCGCGCTCAACGCCAGGGCAAAG
CAATTCAACGACATGTCGCACAGGGCTCTTCCAGCGACTATGGGGCCTGA
TCTGGCGGCCGCACTGGATTTTGATGAAGTGAAGCTGGAGGACGGGTTGG
ATGCCTTTAACGGTTTGCTATCCCGCGCGGACCGTTTGAAGACCCTAGAC
ATCTGTGTCGCTTGAGACAAGGAAGGTGTAGTAGGGTATCTCATCGACCT
GCCTGATGCCTCAGTGGGGCCATTGTTTGGTAGGCTGGAGCTCGGCGCCA
TGGAGTTGTGGTGGAAAGTTCCTGAGAACTGTCCTGCCCTCGCCATCGTG
GTCATATACTATCTCTGCATTCCCGCCTCATCGTCTGCTTTGAAGCGGTT
GTTATCACAAACGGGGCTGATCCAGTCGAAGCTGCGGAATCGGACGATCG
CGAAACTCATGTATCTTCACCCGCGCCAACTGGAACGACAGTCTCTGCCA
AGTATGGCTCTAGGAGAAGACGGCTGGGAGGAGAGCAAGGATGGTAAGGA
GGAGGAAGAGAACGAGGATGAGATGATACGGTGGGAAGAGATGGAGGAAG
GAACTGCGGGGAAGTTCGAAGTTTTTGGGAAGAATAATGAAGTCGCGAAG
ACATCATCGCCGTCTGTCGGCGAGATGTCGCTTATATCGACCCCATCCGA
TAGATTGATTTCAGAACTCGTCCGAGTTCGAGTTCGAGTTCGAGTTCGAT
CGGCCGCGCTCAACGCCAGGGCAAAGCAATTCAACGACATGTCGCACAGG
GCTCTTCCAGCGACTATGGGGCCTGATCTGGCGGCCGCACTGGATTTTGA
TGAAGTGAAGCTGGAGGACGGGTTGGATGCCTTTAACGGTTTGCTATCCC
GCGCGGACCGTTTGAAGACCCTAGACATCTGTGTCGCTTGAGACAAGGAA
GGTGTAGTAGGGTATCTCATCGACCTGCCTGATGCCTCAGTGGGGCCATT
GTTTGGTAGGCTGGAGCTCGGCGCCATGGAGTTGTGGTGGAAAGTTCCTG
AGAACTGTCCTGCCCTCGCCATCGTGGTCATATACTATCTCTGCATTCCC
GCCTCATCGTCTGCTTTGAAGCGGTTGTTATCACAAACGGGGCTGATCCA
GTCGAAGCTGCGGAATCGGACGATCGCGAAACTCATGTATCTTCACCCGC
GCCAACTGGAACGACAGTCTCTGCCAAGTATGGCTCTAGGAGAAGACGGC
TGGGAGGAGAGCAAGGATGGTAAGGAGGAGGAAGAGAACGAGGATGAGAT
GATACGGTGGGAAGAGATGGAGGAAGGAACTGCGGGGAAGTTCGAAGTTT
TTGGGAAGAATAATGAAGTCGCGAAGACATCATCGCCGTCTGTCGGCGAG
ATGTCGCTTATATCGACCCCATCCGATAGATTGATTTCAGAACTCGTCCG
AGTTCGAGTTCGAGTTCGAGTTCGATCGGCCGCGCTCAACGCCAGGGCAA
AGCAATTCAACGACATGTCGCACAGGGCTCTTCCAGCGACTATGGGGCCT
GATCTGGCGGCCGCACTGGATTTTGATGAAGTGAAGCTGGAGGACGGGTT
GGAT

Synonyms

Publications