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Properties
| Property Name | Value |
|---|
| TranscriptId | 669573 |
| Track | FilteredModels2 |
| ProteinId | 669487 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:575683..578533 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3527 ID=mRNA_3527|Name=jgi.p|Nanoce1779_2|669487|organism=Nannochloropsis oceanica|type=mRNA|length=2707bp
CGACCTGCCTGATGCCTCAGTGGGGCCATTGTTTGGTAGGCTGGAGGTGG
GAGGCGATGAAACTCGTCCTCCCTCCTCCGCTCCCGGGAAGAACTGTAGC
AAGCACAAAATCATGGAGCTCTTCCCCGCCGTCCTTACAGTCACCCTCAC
TTCCCCTTACCCTTCTACAACTAGTCACAGGCCTTTAACGGTTTGCTATC
CCGCGCGGACCGTTTGAAGACCCTAGACATCTGTGTCGCTTGAAAGGAGC
AGCACCTCACTTCCACCACATCACGCAGCATCATAACAGCAGCAACACGT
GCCAAGACCACAGCACTATCTAAAACAAGAGGCATTCACAAATAATGGCG
CGTCGTAGCTTGTCGCAAAATTTGCCGAACTTGGTCAAGGGAGGCTGCAC
CGTAGGGGCCGTCACTTATCAATCCGCTGCGGCTCGTGCGTACCACGACG
AAGCAGATGATGCTTCTGTTGGTGGGGTCGGCCGCGACTCGACTGTTTTG
ACGGGCAGCAGTACTAGCAACAACTCCTCCGGGCGAGCGGAAGAAGTGGT
ATTGCAAAGGGGTGCCTTGAAAGTTGCTGGGAGGTCGGCTACTATGGAGC
AGGCGTCGTCCTCTTCTTCCTCGCCGGACCGACATATCAGTGTCCAGGAG
GTTGAAGAGGCTTCTCGCATTCTTTTTGCACCCCAAGGCACCGCTGCCAC
TGCAGCCGTAGCGCATAGTCACCACCATCACAACCACCATGATACTGTGG
CCTCGTCGTCGTTTCGGGAGTCGAACGAGTTGTTGTCTGGCATGTCTGCC
CGGGGAGGAGGACGACGAACCGCTGAAACTTCTGATTCTGTGGAAGAAGA
AGACCTAGCCTGCAAGGACAAAGGGAGCATCTCACCGTCGACTCCATCCA
TATTCCGTCCGGAAGTCCATGCAGAGATATTACGGTTCGGAATGGCCTTG
GCCAACAACCCCAAAATCCAAAGTGCGATTCGAGAGGAGTTAGAAATGCA
TCATGTGCATCATGTGCAGCAACAGGAGCACCTGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGACTAGATTCAGCGGAGGCAACAGTGGTCCAGATG
GAGTCGAACGTGCGGAGGATTTTCTGTCAAGGAGTGGCGGGAGGAGAGGA
GGAGGAGGAAGAGGAGGAGGTAGGGAGGCAGGAGGGAAGTGGGACCTCGG
GAAGTACTGGCAGCAGCAGTTGCAGCCCTTTGACAGGGTCGTTTGAGTTG
TTAGAGGCAATGAGTACTGAATGGGCTCAAGCCCAGGCACAGCAAGAGGA
TAACGAGGATGGGGAAGAAGGAAAATTCGAAGAGGAACATCTTGCGGAAA
ATGTGCCGTCGAATTGTTTCGTGAGTGTCGGGAGGAATATGCGGAGGAAA
GATAGCTTGGCGGGGGAGGTCTCAGACGAGGTGCTGGACGAGCTGCTGAG
GGGGGATGATGACGACGATGTCATCGCTCAGAGGTTATTCGCCCAGACGC
CAGATGAGCAGGTGAGGCGTTACTTGCGGAATCTGGACCTGGAGTGCGTG
ATATGCTGTGAGTACATGGTGGAGTGCAAAGCGGTGGACTGTGGGGAGGG
GCATACGTTTTGTGGGGAGTGTATTGAACAGTGGTTGGGGAGGGAGGGAG
GCAGGGAGGGAGGGGGAAGGTGTCCCACGTGTCAGAAGCCGTGTGGGACG
ACCATTCCCATGAGGCAGTATGACGCCATGATTGAGAAGTATGTTCGAGC
TTCGAATCTGTGGGATGAGCAGTGCTCATTCTATCGTCGTCGCACGCTGG
CACATATACGCCGGGCGCTCGAGAGGCAGGATCGGGAAGAGGAAGAAGCA
GCAGCAGCAGCCACAGCGGCGACGGGAAGCCAGAACCTGTTTGCGGGTTT
GGGATATCTGCTGTTCGGACTGGGAGGGTCAAGTGGGGCAGGGGCGACGC
GGCGGCGGAGGAGGAACCGTCAGGCAGTTGCAGAGGCTTCGGAGGCTGGT
GGTGGTGGTGGTGTGGCGGGTGTAGGGTCCGCGAGGGGGGAGGGGGGCAG
GGCAGAGGACGCGGCGCAGCCATGGTGGAAGAGTGAGGTGCTGAGCACGG
CCTTGTCGGTGGCGACGATGCTTGTCTTACTGGTATTGTTCAAAAGGGGG
ATCAAAATCCGTTAGGGGGGAGAATCGGAGGGAAGGTCGCAAGGAGAGAG
AGAAGGAGGGATTATCGAGAAATCCGAGGGTATGTGTGAAGACGGAAGAG
AGAGAAATACAGAGAAGGAAAGGGAATGAGAAGTTGGTGATAGGGGATGA
TTTACACACACATACATACACGTACACAAACATATATATATAAATAGTGC
TGTCGAAAAACTTGAAATCAAAGAGTATGAGAGAAGATGACAAAAGATAA
GTAGGAAGGAGGAATCAAGGGCAAGAGAACAGGATGCGTACCGATGTTAA
AATCAAACTTAAACCAAAAAATGAGATGAGAGAGATTCAAAAAGAAGAGG
GGGCAAGAGGAGTGAGCGAGACTTGAGAGTATGAGGGGAAACACACCAAG
GAAGGGAGACGTTGGAGACCGAGGAAAAAGGATTGCCTCGGTGAAGAGGC
AAAAACAAAAAGAAGGGAGAGAGAGGCGAAGCGCAAGTATCGAAAGAAAC
AGGCGACAATGCGGCAAGAAGCAGGAGAAAGACCGGAAGAAGGAAGAAGA
CCCCCCT back to topprotein sequence of jgi.p|Nanoce1779_2|669487 >mRNA_3527-protein ID=mRNA_3527-protein|Name=jgi.p|Nanoce1779_2|669487|organism=Nannochloropsis oceanica|type=polypeptide|length=607bp
MARRSLSQNLPNLVKGGCTVGAVTYQSAAARAYHDEADDASVGGVGRDST
VLTGSSTSNNSSGRAEEVVLQRGALKVAGRSATMEQASSSSSSPDRHISV
QEVEEASRILFAPQGTAATAAVAHSHHHHNHHDTVASSSFRESNELLSGM
SARGGGRRTAETSDSVEEEDLACKDKGSISPSTPSIFRPEVHAEILRFGM
ALANNPKIQSAIREELEMHHVHHVQQQEHLEGGREGGREGGLDSAEATVV
QMESNVRRIFCQGVAGGEEEEEEEEVGRQEGSGTSGSTGSSSCSPLTGSF
ELLEAMSTEWAQAQAQQEDNEDGEEGKFEEEHLAENVPSNCFVSVGRNMR
RKDSLAGEVSDEVLDELLRGDDDDDVIAQRLFAQTPDEQVRRYLRNLDLE
CVICCEYMVECKAVDCGEGHTFCGECIEQWLGREGGREGGGRCPTCQKPC
GTTIPMRQYDAMIEKYVRASNLWDEQCSFYRRRTLAHIRRALERQDREEE
EAAAAATAATGSQNLFAGLGYLLFGLGGSSGAGATRRRRRNRQAVAEASE
AGGGGGVAGVGSARGEGGRAEDAAQPWWKSEVLSTALSVATMLVLLVLFK
RGIKIR* back to topmRNA from alignment at scaffold_6:575683..578533- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3527 ID=mRNA_3527|Name=jgi.p|Nanoce1779_2|669487|organism=Nannochloropsis oceanica|type=mRNA|length=2851bp|location=Sequence derived from alignment at scaffold_6:575683..578533- (Nannochloropsis oceanica)
CGACCTGCCTGATGCCTCAGTGGGGCCATTGTTTGGTAGGCTGGAGGTGG
GAGGCGATGAAACTCGTCCTCCCTCCTCCGCTCCCGGGAAGAACTGTAGC
AAGCACAAAATCATGGAGCTCTTCCCCGCCGTCCTTACAGTCACCCTCAC
TTCCCCTTACCCTTCTACAACTAGTCACAGGCCTTTAACGGTTTGCTATC
CCGCGCGGACCGTTTGAAGACCCTAGACATCTGTGTCGCTTGAAAGGAGC
AGCACCTCACTTCCACCACATCACGCAGCATCATAACAGCAGCAACACGT
GCCAAGACCACAGCACTATCTAAAACAAGAGGCATTCACAAATAATGGCG
CGTCGTAGCTTGTCGCAAAATTTGCCGAACTTGGTCAAGGGAGGCTGCAC
CGTAGGGGCCGTCACTTATCAATCCGCTGCGGCTCGTGCGTACCACGACG
AAGCAGATGATGCTTCTGTTGGTGGGGTCGGCCGCGACTCGACTGTTTTG
ACGGGCAGCAGTACTAGCAACAACTCCTCCGGGCGAGCGGAAGAAGTGGT
ATTGCAAAGGGGTGCCTTGAAAGTTGCTGGGAGGTCGGCTACTATGGAGC
AGGCGTCGTCCTCTTCTTCCTCGCCGGACCGACATATCAGTGTCCAGGAG
GTTGAAGAGGCTTCTCGCATTCTTTTTGCACCCCAAGGCACCGCTGCCAC
TGCAGCCGTAGCGCATAGTCACCACCATCACAACCACCATGATACTGTGG
CCTCGTCGTCGTTTCGGGAGTCGAACGAGTTGTTGTCTGGCATGTCTGCC
CGGGGAGGAGGACGACGAACCGCTGAAACTTCTGATTCTGTGGAAGAAGA
AGACCTAGCCTGCAAGGACAAAGGGAGCATCTCACCGTCGACTCCATCCA
TATTCCGTGTACATCGCCAACCCTCCCCTTCTTGCTCGTCTTCCCCTGCC
GTTGCCGCCGCCGCTGCTGCTGCTGCTTCAGCTGCTTCCGCTGTTGCTGT
TACTCCCTCCTCATCTGTCTCTCGCACAACTCTCACACGCTTACACCCCC
AGCCGGAAGTCCATGCAGAGATATTACGGTTCGGAATGGCCTTGGCCAAC
AACCCCAAAATCCAAAGTGCGATTCGAGAGGAGTTAGAAATGCATCATGT
GCATCATGTGCAGCAACAGGAGCACCTGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGACTAGATTCAGCGGAGGCAACAGTGGTCCAGATGGAGTCG
AACGTGCGGAGGATTTTCTGTCAAGGAGTGGCGGGAGGAGAGGAGGAGGA
GGAAGAGGAGGAGGTAGGGAGGCAGGAGGGAAGTGGGACCTCGGGAAGTA
CTGGCAGCAGCAGTTGCAGCCCTTTGACAGGGTCGTTTGAGTTGTTAGAG
GCAATGAGTACTGAATGGGCTCAAGCCCAGGCACAGCAAGAGGATAACGA
GGATGGGGAAGAAGGAAAATTCGAAGAGGAACATCTTGCGGAAAATGTGC
CGTCGAATTGTTTCGTGAGTGTCGGGAGGAATATGCGGAGGAAAGATAGC
TTGGCGGGGGAGGTCTCAGACGAGGTGCTGGACGAGCTGCTGAGGGGGGA
TGATGACGACGATGTCATCGCTCAGAGGTTATTCGCCCAGACGCCAGATG
AGCAGGTGAGGCGTTACTTGCGGAATCTGGACCTGGAGTGCGTGATATGC
TGTGAGTACATGGTGGAGTGCAAAGCGGTGGACTGTGGGGAGGGGCATAC
GTTTTGTGGGGAGTGTATTGAACAGTGGTTGGGGAGGGAGGGAGGCAGGG
AGGGAGGGGGAAGGTGTCCCACGTGTCAGAAGCCGTGTGGGACGACCATT
CCCATGAGGCAGTATGACGCCATGATTGAGAAGTATGTTCGAGCTTCGAA
TCTGTGGGATGAGCAGTGCTCATTCTATCGTCGTCGCACGCTGGCACATA
TACGCCGGGCGCTCGAGAGGCAGGATCGGGAAGAGGAAGAAGCAGCAGCA
GCAGCCACAGCGGCGACGGGAAGCCAGAACCTGTTTGCGGGTTTGGGATA
TCTGCTGTTCGGACTGGGAGGGTCAAGTGGGGCAGGGGCGACGCGGCGGC
GGAGGAGGAACCGTCAGGCAGTTGCAGAGGCTTCGGAGGCTGGTGGTGGT
GGTGGTGTGGCGGGTGTAGGGTCCGCGAGGGGGGAGGGGGGCAGGGCAGA
GGACGCGGCGCAGCCATGGTGGAAGAGTGAGGTGCTGAGCACGGCCTTGT
CGGTGGCGACGATGCTTGTCTTACTGGTATTGTTCAAAAGGGGGATCAAA
ATCCGTTAGGGGGGAGAATCGGAGGGAAGGTCGCAAGGAGAGAGAGAAGG
AGGGATTATCGAGAAATCCGAGGGTATGTGTGAAGACGGAAGAGAGAGAA
ATACAGAGAAGGAAAGGGAATGAGAAGTTGGTGATAGGGGATGATTTACA
CACACATACATACACGTACACAAACATATATATATAAATAGTGCTGTCGA
AAAACTTGAAATCAAAGAGTATGAGAGAAGATGACAAAAGATAAGTAGGA
AGGAGGAATCAAGGGCAAGAGAACAGGATGCGTACCGATGTTAAAATCAA
ACTTAAACCAAAAAATGAGATGAGAGAGATTCAAAAAGAAGAGGGGGCAA
GAGGAGTGAGCGAGACTTGAGAGTATGAGGGGAAACACACCAAGGAAGGG
AGACGTTGGAGACCGAGGAAAAAGGATTGCCTCGGTGAAGAGGCAAAAAC
AAAAAGAAGGGAGAGAGAGGCGAAGCGCAAGTATCGAAAGAAACAGGCGA
CAATGCGGCAAGAAGCAGGAGAAAGACCGGAAGAAGGAAGAAGACCCCCC
T back to topCoding sequence (CDS) from alignment at scaffold_6:575683..578533- >mRNA_3527 ID=mRNA_3527|Name=jgi.p|Nanoce1779_2|669487|organism=Nannochloropsis oceanica|type=CDS|length=3642bp|location=Sequence derived from alignment at scaffold_6:575683..578533- (Nannochloropsis oceanica)
CCGGAAGTCCATGCAGAGATATTACGGTTCGGAATGGCCTTGGCCAACAA
CCCCAAAATCCAAAGTGCGATTCGAGAGGAGTTAGAAATGCATCATGTGC
ATCATGTGCAGCAACAGGAGCACCTGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGACTAGATTCAGCGGAGGCAACAGTGGTCCAGATGGAGTCGAA
CGTGCGGAGGATTTTCTGTCAAGGAGTGGCGGGAGGAGAGGAGGAGGAGG
AAGAGGAGGAGGTAGGGAGGCAGGAGGGAAGTGGGACCTCGGGAAGTACT
GGCAGCAGCAGTTGCAGCCCTTTGACAGGGTCGTTTGAGTTGTTAGAGGC
AATGAGTACTGAATGGGCTCAAGCCCAGGCACAGCAAGAGGATAACGAGG
ATGGGGAAGAAGGAAAATTCGAAGAGGAACATCTTGCGGAAAATGTGCCG
TCGAATTGTTTCGTGAGTGTCGGGAGGAATATGCGGAGGAAAGATAGCTT
GGCGGGGGAGGTCTCAGACGAGGTGCTGGACGAGCTGCTGAGGGGGGATG
ATGACGACGATGTCATCGCTCAGAGGTTATTCGCCCAGACGCCAGATGAG
CAGGTGAGGCGTTACTTGCGGAATCTGGACCTGGAGTGCGTGATATGCTG
TGAGTACATGGTGGAGTGCAAAGCGGTGGACTGTGGGGAGGGGCATACGT
TTTGTGGGGAGTGTATTGAACAGTGGTTGGGGAGGGAGGGAGGCAGGGAG
GGAGGGGGAAGGTGTCCCACGTGTCAGAAGCCGTGTGGGACGACCATTCC
CATGAGGCAGTATGACGCCATGATTGAGAAGTATGTTCGAGCTTCGAATC
TGTGGGATGAGCAGTGCTCATTCTATCGTCGTCGCACGCTGGCACATATA
CGCCGGGCGCTCGAGAGGCAGGATCGGGAAGAGGAAGAAGCAGCAGCAGC
AGCCACAGCGGCGACGGGAAGCCAGAACCTGTTTGCGGGTTTGGGATATC
TGCTGTTCGGACTGGGAGGGTCAAGTGGGGCAGGGGCGACGCGGCGGCGG
AGGAGGAACCGTCAGGCAGTTGCAGAGGCTTCGGAGGCTGGTGGTGGTGG
TGGTGTGGCGGGTGTAGGGTCCGCGAGGGGGGAGGGGGGCAGGGCAGAGG
ACGCGGCGCAGCCATGGTGGAAGAGTGAGGTGCTGAGCACGGCCTTGTCG
GTGGCGACGATGCTTGTCTTACTGGTATTGTTCAAAAGGGGGATCAAAAT
CCGTTAGATGGCGCGTCGTAGCTTGTCGCAAAATTTGCCGAACTTGGTCA
AGGGAGGCTGCACCGTAGGGGCCGTCACTTATCAATCCGCTGCGGCTCGT
GCGTACCACGACGAAGCAGATGATGCTTCTGTTGGTGGGGTCGGCCGCGA
CTCGACTGTTTTGACGGGCAGCAGTACTAGCAACAACTCCTCCGGGCGAG
CGGAAGAAGTGGTATTGCAAAGGGGTGCCTTGAAAGTTGCTGGGAGGTCG
GCTACTATGGAGCAGGCGTCGTCCTCTTCTTCCTCGCCGGACCGACATAT
CAGTGTCCAGGAGGTTGAAGAGGCTTCTCGCATTCTTTTTGCACCCCAAG
GCACCGCTGCCACTGCAGCCGTAGCGCATAGTCACCACCATCACAACCAC
CATGATACTGTGGCCTCGTCGTCGTTTCGGGAGTCGAACGAGTTGTTGTC
TGGCATGTCTGCCCGGGGAGGAGGACGACGAACCGCTGAAACTTCTGATT
CTGTGGAAGAAGAAGACCTAGCCTGCAAGGACAAAGGGAGCATCTCACCG
TCGACTCCATCCATATTCCGTCCGGAAGTCCATGCAGAGATATTACGGTT
CGGAATGGCCTTGGCCAACAACCCCAAAATCCAAAGTGCGATTCGAGAGG
AGTTAGAAATGCATCATGTGCATCATGTGCAGCAACAGGAGCACCTGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGACTAGATTCAGCGGAGGCAAC
AGTGGTCCAGATGGAGTCGAACGTGCGGAGGATTTTCTGTCAAGGAGTGG
CGGGAGGAGAGGAGGAGGAGGAAGAGGAGGAGGTAGGGAGGCAGGAGGGA
AGTGGGACCTCGGGAAGTACTGGCAGCAGCAGTTGCAGCCCTTTGACAGG
GTCGTTTGAGTTGTTAGAGGCAATGAGTACTGAATGGGCTCAAGCCCAGG
CACAGCAAGAGGATAACGAGGATGGGGAAGAAGGAAAATTCGAAGAGGAA
CATCTTGCGGAAAATGTGCCGTCGAATTGTTTCGTGAGTGTCGGGAGGAA
TATGCGGAGGAAAGATAGCTTGGCGGGGGAGGTCTCAGACGAGGTGCTGG
ACGAGCTGCTGAGGGGGGATGATGACGACGATGTCATCGCTCAGAGGTTA
TTCGCCCAGACGCCAGATGAGCAGGTGAGGCGTTACTTGCGGAATCTGGA
CCTGGAGTGCGTGATATGCTGTGAGTACATGGTGGAGTGCAAAGCGGTGG
ACTGTGGGGAGGGGCATACGTTTTGTGGGGAGTGTATTGAACAGTGGTTG
GGGAGGGAGGGAGGCAGGGAGGGAGGGGGAAGGTGTCCCACGTGTCAGAA
GCCGTGTGGGACGACCATTCCCATGAGGCAGTATGACGCCATGATTGAGA
AGTATGTTCGAGCTTCGAATCTGTGGGATGAGCAGTGCTCATTCTATCGT
CGTCGCACGCTGGCACATATACGCCGGGCGCTCGAGAGGCAGGATCGGGA
AGAGGAAGAAGCAGCAGCAGCAGCCACAGCGGCGACGGGAAGCCAGAACC
TGTTTGCGGGTTTGGGATATCTGCTGTTCGGACTGGGAGGGTCAAGTGGG
GCAGGGGCGACGCGGCGGCGGAGGAGGAACCGTCAGGCAGTTGCAGAGGC
TTCGGAGGCTGGTGGTGGTGGTGGTGTGGCGGGTGTAGGGTCCGCGAGGG
GGGAGGGGGGCAGGGCAGAGGACGCGGCGCAGCCATGGTGGAAGAGTGAG
GTGCTGAGCACGGCCTTGTCGGTGGCGACGATGCTTGTCTTACTGGTATT
GTTCAAAAGGGGGATCAAAATCCGTTAGATGGCGCGTCGTAGCTTGTCGC
AAAATTTGCCGAACTTGGTCAAGGGAGGCTGCACCGTAGGGGCCGTCACT
TATCAATCCGCTGCGGCTCGTGCGTACCACGACGAAGCAGATGATGCTTC
TGTTGGTGGGGTCGGCCGCGACTCGACTGTTTTGACGGGCAGCAGTACTA
GCAACAACTCCTCCGGGCGAGCGGAAGAAGTGGTATTGCAAAGGGGTGCC
TTGAAAGTTGCTGGGAGGTCGGCTACTATGGAGCAGGCGTCGTCCTCTTC
TTCCTCGCCGGACCGACATATCAGTGTCCAGGAGGTTGAAGAGGCTTCTC
GCATTCTTTTTGCACCCCAAGGCACCGCTGCCACTGCAGCCGTAGCGCAT
AGTCACCACCATCACAACCACCATGATACTGTGGCCTCGTCGTCGTTTCG
GGAGTCGAACGAGTTGTTGTCTGGCATGTCTGCCCGGGGAGGAGGACGAC
GAACCGCTGAAACTTCTGATTCTGTGGAAGAAGAAGACCTAGCCTGCAAG
GACAAAGGGAGCATCTCACCGTCGACTCCATCCATATTCCGT back to top
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