jgi.p|Nanoce1779_2|564448, mRNA_3526 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|564448
Unique Name	mRNA_3526
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1509
Alignment location	scaffold_6:574029..575613 +

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Properties


Property Name	Value
TranscriptId	564534
Track	FilteredModels2
ProteinId	564448

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:574029..575613 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|564448	gene_3526	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|564448	mRNA_3526-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3526	CDS_3526	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:574029..575613+
coding sequence from alignment at scaffold_6:574029..575613+

mRNA sequence

>mRNA_3526 ID=mRNA_3526|Name=jgi.p|Nanoce1779_2|564448|organism=Nannochloropsis oceanica|type=mRNA|length=1509bp
ATGGCAAGCAAACAATGCCGGGAGCAAGAACAGGAGGAGGACGATGACGA
CGACGATGGCCCCCCCGAGCTGGTGGCTTTGCCACTGCCGTCCTCCTCTT
TTTCACCCAACAAGCTGCCGTTGTCAGCCCTCCCAGCCCAAGCCCAAGAA
GACGATGGGGCAATCCAGCAACTGTCAAGCAGCAGCATGGGCTCCAGTAC
GGCCATCGGCATCAGCAAAATCATCCCCGTCACCATAATTTCGGGCTTCC
TGGGCGCAGGGAAGACGACCTTGCTCAATTACATCCTGACCCAACCCCAC
GGGAAGCGAATCGCCGTAATTGAAAACGAGTTCGGGCAAGGCCTGGGTAT
CGAGAGCGCTATTGCCAAAGACGGTGCGGATGGGAGTAGTCTCGAAGGGT
TTTTCGAGCTGGCCAACGGGTGTATTTGCTGCTCCGTGAAGAGCGACCTG
TTGGCCACACTCGAGATTCTGGTGCAACGCAAGTCTCAATTCGACTACGT
ATTAATTGAGACGAGTGGATTAGCGGACCCCGGGCCGGTTGCGAGCTGCT
TGTGGGTGGACGAGGAGCTGGAGAGTCAGTTGAGGTTGGATGGGATTGTT
ACGGTGGTGGACGCCAAGCATATTGGGCGGCACCTGCGTCGGCGACAGCA
GCAACAGCAGCAAGGATTGGCGGGGGAGCAAAAGCAAGAGCAGGATTCGA
CTGAAAATGGGAAGCAGGGCCAAAAGTGGATATCGCCGAGTCAAGGAGCG
GCACTAAAGAGTGAGGAGGGCAACACACAGCACGAGCCCTTCCTCCCTCC
CTCCTCCACAACCCTAACAGGAAAAACCAACTGCCACCGGGAAGAGGCTT
ATCAGCAAATCTGCGTTGCTGACCGAATATTGCTTAATAAAACAGATCTT
GTCACTGAGGCTGATTTATCAAAGCTAGAGGCGGAGCTGAGGGGGTTAAA
CGGAATGGCACGCATACAACGAACGAATTTCTCGAAGATCGACCTGGACT
TTGTATTAGGGTTGGATTGTTATGGAGCCAGGAAGAAGGATGATGTTTCC
TTGCCTTTCTTGAACGTTTGCGGCGCAGAACATGTTCATGGTGGGAATGA
GGAGGGAAGGAGGGACGACGAAGTAAGAACGGTGGCGTGGGTGGAGGGGG
TGGAGGTGAAGGTGGAGGCGGTCAAGCAGTGGTTGGCTGAGCTGTTGTGG
AGGGATGATGATAAGGAGGTGGATGCGAAGCAGCAGCAGCAGCAAGAACG
ACAACAGCAGCAGCATATCTACCGGATGAAGGGTACCTTGGCGGTGGCGG
GCTCGGAGGTGTTGCACATTTTGCAGGCTGTCCATGAGACTTTTGAACTG
GAGCCGAGCCAGACGCTTGTTGGTGAGGGGGATAAAGGGGAGGGAGGGGA
GGAGAGGAGAGGGGGAAAGGAGTGTCGCTTGGTGGTAATTGGCAAGGGAC
TAGATGAAGGGCACTTGAGAGCTGGCTTTTTGGCGACGGCTGTTTCAGCT
ACACGGTGA

protein sequence of jgi.p|Nanoce1779_2|564448

>mRNA_3526-protein ID=mRNA_3526-protein|Name=jgi.p|Nanoce1779_2|564448|organism=Nannochloropsis oceanica|type=polypeptide|length=503bp
MASKQCREQEQEEDDDDDDGPPELVALPLPSSSFSPNKLPLSALPAQAQE
DDGAIQQLSSSSMGSSTAIGISKIIPVTIISGFLGAGKTTLLNYILTQPH
GKRIAVIENEFGQGLGIESAIAKDGADGSSLEGFFELANGCICCSVKSDL
LATLEILVQRKSQFDYVLIETSGLADPGPVASCLWVDEELESQLRLDGIV
TVVDAKHIGRHLRRRQQQQQQGLAGEQKQEQDSTENGKQGQKWISPSQGA
ALKSEEGNTQHEPFLPPSSTTLTGKTNCHREEAYQQICVADRILLNKTDL
VTEADLSKLEAELRGLNGMARIQRTNFSKIDLDFVLGLDCYGARKKDDVS
LPFLNVCGAEHVHGGNEEGRRDDEVRTVAWVEGVEVKVEAVKQWLAELLW
RDDDKEVDAKQQQQQERQQQQHIYRMKGTLAVAGSEVLHILQAVHETFEL
EPSQTLVGEGDKGEGGEERRGGKECRLVVIGKGLDEGHLRAGFLATAVSA
TR*

mRNA from alignment at scaffold_6:574029..575613+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3526 ID=mRNA_3526|Name=jgi.p|Nanoce1779_2|564448|organism=Nannochloropsis oceanica|type=mRNA|length=1585bp|location=Sequence derived from alignment at scaffold_6:574029..575613+ (Nannochloropsis oceanica)
ATGGCAAGCAAACAATGCCGGGAGCAAGAACAGGAGGAGGACGATGACGA
CGACGATGGCCCCCCCGAGCTGGTGGCTTTGCCACTGCCGTCCTCCTCTT
TTTCACCCAACAAGCTGCCGTTGTCAGCCCTCCCAGCCCAAGCCCAAGAA
GACGATGGGGCAATCCAGCAACTGTCAAGCAGCAGCATGGGCTCCAGTAC
GGCCATCGGCATCAGCAAAATCATCCCCGTCACCATAATTTCGGGCTTCC
TGGGCGCAGGTACGTGTTTGCCTGCGAGCGCATTACCTCGACACAACTCT
TCCTCAACCTCCCCACGTCCTGCTCACACAAACAGGGAAGACGACCTTGC
TCAATTACATCCTGACCCAACCCCACGGGAAGCGAATCGCCGTAATTGAA
AACGAGTTCGGGCAAGGCCTGGGTATCGAGAGCGCTATTGCCAAAGACGG
TGCGGATGGGAGTAGTCTCGAAGGGTTTTTCGAGCTGGCCAACGGGTGTA
TTTGCTGCTCCGTGAAGAGCGACCTGTTGGCCACACTCGAGATTCTGGTG
CAACGCAAGTCTCAATTCGACTACGTATTAATTGAGACGAGTGGATTAGC
GGACCCCGGGCCGGTTGCGAGCTGCTTGTGGGTGGACGAGGAGCTGGAGA
GTCAGTTGAGGTTGGATGGGATTGTTACGGTGGTGGACGCCAAGCATATT
GGGCGGCACCTGCGTCGGCGACAGCAGCAACAGCAGCAAGGATTGGCGGG
GGAGCAAAAGCAAGAGCAGGATTCGACTGAAAATGGGAAGCAGGGCCAAA
AGTGGATATCGCCGAGTCAAGGAGCGGCACTAAAGAGTGAGGAGGGCAAC
ACACAGCACGAGCCCTTCCTCCCTCCCTCCTCCACAACCCTAACAGGAAA
AACCAACTGCCACCGGGAAGAGGCTTATCAGCAAATCTGCGTTGCTGACC
GAATATTGCTTAATAAAACAGATCTTGTCACTGAGGCTGATTTATCAAAG
CTAGAGGCGGAGCTGAGGGGGTTAAACGGAATGGCACGCATACAACGAAC
GAATTTCTCGAAGATCGACCTGGACTTTGTATTAGGGTTGGATTGTTATG
GAGCCAGGAAGAAGGATGATGTTTCCTTGCCTTTCTTGAACGTTTGCGGC
GCAGAACATGTTCATGGTGGGAATGAGGAGGGAAGGAGGGACGACGAAGT
AAGAACGGTGGCGTGGGTGGAGGGGGTGGAGGTGAAGGTGGAGGCGGTCA
AGCAGTGGTTGGCTGAGCTGTTGTGGAGGGATGATGATAAGGAGGTGGAT
GCGAAGCAGCAGCAGCAGCAAGAACGACAACAGCAGCAGCATATCTACCG
GATGAAGGGTACCTTGGCGGTGGCGGGCTCGGAGGTGTTGCACATTTTGC
AGGCTGTCCATGAGACTTTTGAACTGGAGCCGAGCCAGACGCTTGTTGGT
GAGGGGGATAAAGGGGAGGGAGGGGAGGAGAGGAGAGGGGGAAAGGAGTG
TCGCTTGGTGGTAATTGGCAAGGGACTAGATGAAGGGCACTTGAGAGCTG
GCTTTTTGGCGACGGCTGTTTCAGCTACACGGTGA

Coding sequence (CDS) from alignment at scaffold_6:574029..575613+

>mRNA_3526 ID=mRNA_3526|Name=jgi.p|Nanoce1779_2|564448|organism=Nannochloropsis oceanica|type=CDS|length=3018bp|location=Sequence derived from alignment at scaffold_6:574029..575613+ (Nannochloropsis oceanica)
ATGGCAAGCAAACAATGCCGGGAGCAAGAACAGGAGGAGGACGATGACGA
CGACGATGGCCCCCCCGAGCTGGTGGCTTTGCCACTGCCGTCCTCCTCTT
TTTCACCCAACAAGCTGCCGTTGTCAGCCCTCCCAGCCCAAGCCCAAGAA
GACGATGGGGCAATCCAGCAACTGTCAAGCAGCAGCATGGGCTCCAGTAC
GGCCATCGGCATCAGCAAAATCATCCCCGTCACCATAATTTCGGGCTTCC
TGGGCGCAGGGAAGACGACCTTGCTCAATTACATCCTGACCCAACCCCAC
GGGAAGCGAATCGCCGTAATTGAAAACGAGTTCGGGCAAGGCCTGGGTAT
CGAGAGCGCTATTGCCAAAGACGGTGCGGATGGGAGTAGTCTCGAAGGGT
TTTTCGAGCTGGCCAACGGGTGTATTTGCTGCTCCGTGAAGAGCGACCTG
TTGGCCACACTCGAGATTCTGGTGCAACGCAAGTCTCAATTCGACTACGT
ATTAATTGAGACGAGTGGATTAGCGGACCCCGGGCCGGTTGCGAGCTGCT
TGTGGGTGGACGAGGAGCTGGAGAGTCAGTTGAGGTTGGATGGGATTGTT
ACGGTGGTGGACGCCAAGCATATTGGGCGGCACCTGCGTCGGCGACAGCA
GCAACAGCAGCAAGGATTGGCGGGGGAGCAAAAGCAAGAGCAGGATTCGA
CTGAAAATGGGAAGCAGGGCCAAAAGTGGATATCGCCGAGTCAAGGAGCG
GCACTAAAGAGTGAGGAGGGCAACACACAGCACGAGCCCTTCCTCCCTCC
CTCCTCCACAACCCTAACAGGAAAAACCAACTGCCACCGGGAAGAGGCTT
ATCAGCAAATCTGCGTTGCTGACCGAATATTGCTTAATAAAACAGATCTT
GTCACTGAGGCTGATTTATCAAAGCTAGAGGCGGAGCTGAGGGGGTTAAA
CGGAATGGCACGCATACAACGAACGAATTTCTCGAAGATCGACCTGGACT
TTGTATTAGGGTTGGATTGTTATGGAGCCAGGAAGAAGGATGATGTTTCC
TTGCCTTTCTTGAACGTTTGCGGCGCAGAACATGTTCATGGTGGGAATGA
GGAGGGAAGGAGGGACGACGAAGTAAGAACGGTGGCGTGGGTGGAGGGGG
TGGAGGTGAAGGTGGAGGCGGTCAAGCAGTGGTTGGCTGAGCTGTTGTGG
AGGGATGATGATAAGGAGGTGGATGCGAAGCAGCAGCAGCAGCAAGAACG
ACAACAGCAGCAGCATATCTACCGGATGAAGGGTACCTTGGCGGTGGCGG
GCTCGGAGGTGTTGCACATTTTGCAGGCTGTCCATGAGACTTTTGAACTG
GAGCCGAGCCAGACGCTTGTTGGTGAGGGGGATAAAGGGGAGGGAGGGGA
GGAGAGGAGAGGGGGAAAGGAGTGTCGCTTGGTGGTAATTGGCAAGGGAC
TAGATGAAGGGCACTTGAGAGCTGGCTTTTTGGCGACGGCTGTTTCAGCT
ACACGGTGAATGGCAAGCAAACAATGCCGGGAGCAAGAACAGGAGGAGGA
CGATGACGACGACGATGGCCCCCCCGAGCTGGTGGCTTTGCCACTGCCGT
CCTCCTCTTTTTCACCCAACAAGCTGCCGTTGTCAGCCCTCCCAGCCCAA
GCCCAAGAAGACGATGGGGCAATCCAGCAACTGTCAAGCAGCAGCATGGG
CTCCAGTACGGCCATCGGCATCAGCAAAATCATCCCCGTCACCATAATTT
CGGGCTTCCTGGGCGCAGGGAAGACGACCTTGCTCAATTACATCCTGACC
CAACCCCACGGGAAGCGAATCGCCGTAATTGAAAACGAGTTCGGGCAAGG
CCTGGGTATCGAGAGCGCTATTGCCAAAGACGGTGCGGATGGGAGTAGTC
TCGAAGGGTTTTTCGAGCTGGCCAACGGGTGTATTTGCTGCTCCGTGAAG
AGCGACCTGTTGGCCACACTCGAGATTCTGGTGCAACGCAAGTCTCAATT
CGACTACGTATTAATTGAGACGAGTGGATTAGCGGACCCCGGGCCGGTTG
CGAGCTGCTTGTGGGTGGACGAGGAGCTGGAGAGTCAGTTGAGGTTGGAT
GGGATTGTTACGGTGGTGGACGCCAAGCATATTGGGCGGCACCTGCGTCG
GCGACAGCAGCAACAGCAGCAAGGATTGGCGGGGGAGCAAAAGCAAGAGC
AGGATTCGACTGAAAATGGGAAGCAGGGCCAAAAGTGGATATCGCCGAGT
CAAGGAGCGGCACTAAAGAGTGAGGAGGGCAACACACAGCACGAGCCCTT
CCTCCCTCCCTCCTCCACAACCCTAACAGGAAAAACCAACTGCCACCGGG
AAGAGGCTTATCAGCAAATCTGCGTTGCTGACCGAATATTGCTTAATAAA
ACAGATCTTGTCACTGAGGCTGATTTATCAAAGCTAGAGGCGGAGCTGAG
GGGGTTAAACGGAATGGCACGCATACAACGAACGAATTTCTCGAAGATCG
ACCTGGACTTTGTATTAGGGTTGGATTGTTATGGAGCCAGGAAGAAGGAT
GATGTTTCCTTGCCTTTCTTGAACGTTTGCGGCGCAGAACATGTTCATGG
TGGGAATGAGGAGGGAAGGAGGGACGACGAAGTAAGAACGGTGGCGTGGG
TGGAGGGGGTGGAGGTGAAGGTGGAGGCGGTCAAGCAGTGGTTGGCTGAG
CTGTTGTGGAGGGATGATGATAAGGAGGTGGATGCGAAGCAGCAGCAGCA
GCAAGAACGACAACAGCAGCAGCATATCTACCGGATGAAGGGTACCTTGG
CGGTGGCGGGCTCGGAGGTGTTGCACATTTTGCAGGCTGTCCATGAGACT
TTTGAACTGGAGCCGAGCCAGACGCTTGTTGGTGAGGGGGATAAAGGGGA
GGGAGGGGAGGAGAGGAGAGGGGGAAAGGAGTGTCGCTTGGTGGTAATTG
GCAAGGGACTAGATGAAGGGCACTTGAGAGCTGGCTTTTTGGCGACGGCT
GTTTCAGCTACACGGTGA

Synonyms

Publications