jgi.p|Nanoce1779_2|582469, mRNA_3525 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582469
Unique Name	mRNA_3525
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1823
Alignment location	scaffold_6:571976..573918 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582555
Track	FilteredModels2
ProteinId	582469

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:571976..573918 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582469	gene_3525	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582469	mRNA_3525-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3525	CDS_3525	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:571976..573918-
coding sequence from alignment at scaffold_6:571976..573918-

mRNA sequence

>mRNA_3525 ID=mRNA_3525|Name=jgi.p|Nanoce1779_2|582469|organism=Nannochloropsis oceanica|type=mRNA|length=1823bp
AGAGGGTCAAAGCAGCACTTTTGGCAATGAAATTAGACAGAAAGAGACAT
AAATAAAAGCACGGAGTCTGCACAAGCGCAAAAATGGCAAGCGTCATTCG
CCACTCCTCTTCGTCCTTTCCCCCAAAGCTCCCGCCTGCCCCTCCACCAT
GGGCACTTCATGCTGCCTTCACGGCCCTGGGTCTGTCGTCCTTTATGCTG
TCAAATGCACTATGGGCGGAGATGGCAGCCTTTGTTGCTGCGTTGCCGGA
AGCCGATAAGCTAGGAAGCTATTTGCTATTGTCGCTCCAGGTTGCCAATG
TCGTCCCAGCTGCAGTCATGCTCCGCGGCCCCGAAGCAATGCACCTCGAA
TCCGTCATTTGGATCCTCCTCCTCGGCGGCATCCTCACAAGTCAGCTCAT
GAGCTTCTGTTGGTCCTCTACCACAGACATGAGCAACGGCAACATGGAAG
ACAGCAACAGTTCCCATTCAATCGCCTTGATCATTTTGACTTTCTTTGCA
GGCTCGATTAATAACTCCTCCTCACTCTACCTCTACCCCTTCGTCGCGCA
ATGGGAAAGTCGCTACATCTCCGCCCTAGCCACAGGAGAGGGCTTATCAG
GCATATTGGTATCTTTATTGGCGCTCGCTCAAAATGTAGGGGGGAGGCAT
CCGAGGTTTTCGGTAACTGCATTTTTCCAGGGCGTCAGTGCCTTTTACCT
CTTTTCGGTGCTTGGCTTCTCGTACCTCTTAAGGGAGCAGAAACGACAGG
AAGCACGCAAGATGACCTCAACAGCAACAGCGCCGAGAGCAGCAGCAACA
GTAGCAGAGGAAACAAGACACGCATCCGACGTATCAGCTTATAAACGCCT
CCTCCTCCTCCACCAAAGCACCACCCACGAGGAAAACGAAGAGAGCACCC
TCGTCCTCCCTCTCTCCTCCCCATCTTTCTCCTTCTCCCCCTCCGTTCCC
AAAGAGAAACCCGTCCTCCACCTTATTTACCCTCTATTACTTGCTCAATT
CGGAATCAGTGCCTGGGCCTATGGCGTCATTCCTGCCCTCACCCCAATCT
CGACAGGGGGGTATCAACATAGTGGGAAGATATTACAATTTTCATCCTTT
GTCTCCATGGCACTCGATCCACTCTCGCGGGCTTTGACTCACTATTGTCG
ATGTTATCGTCTTGTTTTGCTGTTTGGAATTGTGAATTTGCTGGCGATAC
TCTTGGCGGTGGCGGCAGGGATGGCCCCCCGACCTCCCTTTTGGGAGTGG
GAGGGAGGAGGGGTGTTTGTGGTTGTTGTGAATGGAGGGTTCACGGCGGC
ATTTGCGTTCTGTTCAACGATGTTTTACTTTAGCATTCGTTTGGCGCTGC
AATTGCGGAGTGAGCAAGAGGAGGAGAACGGAAAGGAAGGGAGAGAGAGT
GGGGCGGGAGGGGGAGTGATGGGGGTGCAGGCGGCGGCTGCGTTTGAGAC
GTGTGCTATGAAGGAGGGAGAGGAGACGGAGGAAGGGGAGCAAGGAAACG
AAGTTGGTAGTGACAGAGTAGATTTTGGTGTGCCCGCATCGACGGAGGAG
GGGGGAAGGGATGAAGGAAGAGAAGACGAGGAGAAGCAGCAGTTGGAGCG
AGGGCAGCTGTTGAGATGGCAGGAGGGATTCAGGTGGTCGAGTTTTGTGA
TCCAGATAGGGGCATTCGTGGGTGCCTTGCTGACATTTCTGCTTGTCAGG
TAGAGTTCTTAAGCCCTCCTCCTTACGGTTTTGAGTGAAAGCGGGTTAAG
CAGAAGGGGTGGAAAAATTACAAAATAAAACGCTCTGTACACTAATTATA
GAAACCTCATTTTTGGCCTAAAA

protein sequence of jgi.p|Nanoce1779_2|582469

>mRNA_3525-protein ID=mRNA_3525-protein|Name=jgi.p|Nanoce1779_2|582469|organism=Nannochloropsis oceanica|type=polypeptide|length=540bp
MASVIRHSSSSFPPKLPPAPPPWALHAAFTALGLSSFMLSNALWAEMAAF
VAALPEADKLGSYLLLSLQVANVVPAAVMLRGPEAMHLESVIWILLLGGI
LTSQLMSFCWSSTTDMSNGNMEDSNSSHSIALIILTFFAGSINNSSSLYL
YPFVAQWESRYISALATGEGLSGILVSLLALAQNVGGRHPRFSVTAFFQG
VSAFYLFSVLGFSYLLREQKRQEARKMTSTATAPRAAATVAEETRHASDV
SAYKRLLLLHQSTTHEENEESTLVLPLSSPSFSFSPSVPKEKPVLHLIYP
LLLAQFGISAWAYGVIPALTPISTGGYQHSGKILQFSSFVSMALDPLSRA
LTHYCRCYRLVLLFGIVNLLAILLAVAAGMAPRPPFWEWEGGGVFVVVVN
GGFTAAFAFCSTMFYFSIRLALQLRSEQEEENGKEGRESGAGGGVMGVQA
AAAFETCAMKEGEETEEGEQGNEVGSDRVDFGVPASTEEGGRDEGREDEE
KQQLERGQLLRWQEGFRWSSFVIQIGAFVGALLTFLLVR*

mRNA from alignment at scaffold_6:571976..573918-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3525 ID=mRNA_3525|Name=jgi.p|Nanoce1779_2|582469|organism=Nannochloropsis oceanica|type=mRNA|length=1943bp|location=Sequence derived from alignment at scaffold_6:571976..573918- (Nannochloropsis oceanica)
AGAGGGTCAAAGCAGCACTTTTGGCAATGAAATTAGACAGAAAGAGACAT
AAATAAAAGCACGGAGTCTGCACAAGCGCAAAAATGGCAAGCGTCATTCG
CCACTCCTCTTCGTCCTTTCCCCCAAAGCTCCCGCCTGCCCCTCCACCAT
GGGCACTTCATGCTGCCTTCACGGCCCTGGGTCTGTCGTCCTTTATGCTG
TCAAATGCACTATGGGCGGAGATGGCAGCCTTTGTTGCTGCGTTGCCGGA
AGCCGATAAGCTAGGAAGCTATTTGCTATTGTCGCTCCAGGTAGGAAAGG
GCTCAAGAGGAAGGGGGCTAGCATGCATGCGGTGGGACCCGAAGCAAGCC
CTACTCCCAGCTCATGTCATCCCCATTCTCAACGACACGACACCCTCGCC
TCACCCGCAGGTTGCCAATGTCGTCCCAGCTGCAGTCATGCTCCGCGGCC
CCGAAGCAATGCACCTCGAATCCGTCATTTGGATCCTCCTCCTCGGCGGC
ATCCTCACAAGTCAGCTCATGAGCTTCTGTTGGTCCTCTACCACAGACAT
GAGCAACGGCAACATGGAAGACAGCAACAGTTCCCATTCAATCGCCTTGA
TCATTTTGACTTTCTTTGCAGGCTCGATTAATAACTCCTCCTCACTCTAC
CTCTACCCCTTCGTCGCGCAATGGGAAAGTCGCTACATCTCCGCCCTAGC
CACAGGAGAGGGCTTATCAGGCATATTGGTATCTTTATTGGCGCTCGCTC
AAAATGTAGGGGGGAGGCATCCGAGGTTTTCGGTAACTGCATTTTTCCAG
GGCGTCAGTGCCTTTTACCTCTTTTCGGTGCTTGGCTTCTCGTACCTCTT
AAGGGAGCAGAAACGACAGGAAGCACGCAAGATGACCTCAACAGCAACAG
CGCCGAGAGCAGCAGCAACAGTAGCAGAGGAAACAAGACACGCATCCGAC
GTATCAGCTTATAAACGCCTCCTCCTCCTCCACCAAAGCACCACCCACGA
GGAAAACGAAGAGAGCACCCTCGTCCTCCCTCTCTCCTCCCCATCTTTCT
CCTTCTCCCCCTCCGTTCCCAAAGAGAAACCCGTCCTCCACCTTATTTAC
CCTCTATTACTTGCTCAATTCGGAATCAGTGCCTGGGCCTATGGCGTCAT
TCCTGCCCTCACCCCAATCTCGACAGGGGGGTATCAACATAGTGGGAAGA
TATTACAATTTTCATCCTTTGTCTCCATGGCACTCGATCCACTCTCGCGG
GCTTTGACTCACTATTGTCGATGTTATCGTCTTGTTTTGCTGTTTGGAAT
TGTGAATTTGCTGGCGATACTCTTGGCGGTGGCGGCAGGGATGGCCCCCC
GACCTCCCTTTTGGGAGTGGGAGGGAGGAGGGGTGTTTGTGGTTGTTGTG
AATGGAGGGTTCACGGCGGCATTTGCGTTCTGTTCAACGATGTTTTACTT
TAGCATTCGTTTGGCGCTGCAATTGCGGAGTGAGCAAGAGGAGGAGAACG
GAAAGGAAGGGAGAGAGAGTGGGGCGGGAGGGGGAGTGATGGGGGTGCAG
GCGGCGGCTGCGTTTGAGACGTGTGCTATGAAGGAGGGAGAGGAGACGGA
GGAAGGGGAGCAAGGAAACGAAGTTGGTAGTGACAGAGTAGATTTTGGTG
TGCCCGCATCGACGGAGGAGGGGGGAAGGGATGAAGGAAGAGAAGACGAG
GAGAAGCAGCAGTTGGAGCGAGGGCAGCTGTTGAGATGGCAGGAGGGATT
CAGGTGGTCGAGTTTTGTGATCCAGATAGGGGCATTCGTGGGTGCCTTGC
TGACATTTCTGCTTGTCAGGTAGAGTTCTTAAGCCCTCCTCCTTACGGTT
TTGAGTGAAAGCGGGTTAAGCAGAAGGGGTGGAAAAATTACAAAATAAAA
CGCTCTGTACACTAATTATAGAAACCTCATTTTTGGCCTAAAA

Coding sequence (CDS) from alignment at scaffold_6:571976..573918-

>mRNA_3525 ID=mRNA_3525|Name=jgi.p|Nanoce1779_2|582469|organism=Nannochloropsis oceanica|type=CDS|length=3240bp|location=Sequence derived from alignment at scaffold_6:571976..573918- (Nannochloropsis oceanica)
GTTGCCAATGTCGTCCCAGCTGCAGTCATGCTCCGCGGCCCCGAAGCAAT
GCACCTCGAATCCGTCATTTGGATCCTCCTCCTCGGCGGCATCCTCACAA
GTCAGCTCATGAGCTTCTGTTGGTCCTCTACCACAGACATGAGCAACGGC
AACATGGAAGACAGCAACAGTTCCCATTCAATCGCCTTGATCATTTTGAC
TTTCTTTGCAGGCTCGATTAATAACTCCTCCTCACTCTACCTCTACCCCT
TCGTCGCGCAATGGGAAAGTCGCTACATCTCCGCCCTAGCCACAGGAGAG
GGCTTATCAGGCATATTGGTATCTTTATTGGCGCTCGCTCAAAATGTAGG
GGGGAGGCATCCGAGGTTTTCGGTAACTGCATTTTTCCAGGGCGTCAGTG
CCTTTTACCTCTTTTCGGTGCTTGGCTTCTCGTACCTCTTAAGGGAGCAG
AAACGACAGGAAGCACGCAAGATGACCTCAACAGCAACAGCGCCGAGAGC
AGCAGCAACAGTAGCAGAGGAAACAAGACACGCATCCGACGTATCAGCTT
ATAAACGCCTCCTCCTCCTCCACCAAAGCACCACCCACGAGGAAAACGAA
GAGAGCACCCTCGTCCTCCCTCTCTCCTCCCCATCTTTCTCCTTCTCCCC
CTCCGTTCCCAAAGAGAAACCCGTCCTCCACCTTATTTACCCTCTATTAC
TTGCTCAATTCGGAATCAGTGCCTGGGCCTATGGCGTCATTCCTGCCCTC
ACCCCAATCTCGACAGGGGGGTATCAACATAGTGGGAAGATATTACAATT
TTCATCCTTTGTCTCCATGGCACTCGATCCACTCTCGCGGGCTTTGACTC
ACTATTGTCGATGTTATCGTCTTGTTTTGCTGTTTGGAATTGTGAATTTG
CTGGCGATACTCTTGGCGGTGGCGGCAGGGATGGCCCCCCGACCTCCCTT
TTGGGAGTGGGAGGGAGGAGGGGTGTTTGTGGTTGTTGTGAATGGAGGGT
TCACGGCGGCATTTGCGTTCTGTTCAACGATGTTTTACTTTAGCATTCGT
TTGGCGCTGCAATTGCGGAGTGAGCAAGAGGAGGAGAACGGAAAGGAAGG
GAGAGAGAGTGGGGCGGGAGGGGGAGTGATGGGGGTGCAGGCGGCGGCTG
CGTTTGAGACGTGTGCTATGAAGGAGGGAGAGGAGACGGAGGAAGGGGAG
CAAGGAAACGAAGTTGGTAGTGACAGAGTAGATTTTGGTGTGCCCGCATC
GACGGAGGAGGGGGGAAGGGATGAAGGAAGAGAAGACGAGGAGAAGCAGC
AGTTGGAGCGAGGGCAGCTGTTGAGATGGCAGGAGGGATTCAGGTGGTCG
AGTTTTGTGATCCAGATAGGGGCATTCGTGGGTGCCTTGCTGACATTTCT
GCTTGTCAGGTAGATGGCAAGCGTCATTCGCCACTCCTCTTCGTCCTTTC
CCCCAAAGCTCCCGCCTGCCCCTCCACCATGGGCACTTCATGCTGCCTTC
ACGGCCCTGGGTCTGTCGTCCTTTATGCTGTCAAATGCACTATGGGCGGA
GATGGCAGCCTTTGTTGCTGCGTTGCCGGAAGCCGATAAGCTAGGAAGCT
ATTTGCTATTGTCGCTCCAGGTTGCCAATGTCGTCCCAGCTGCAGTCATG
CTCCGCGGCCCCGAAGCAATGCACCTCGAATCCGTCATTTGGATCCTCCT
CCTCGGCGGCATCCTCACAAGTCAGCTCATGAGCTTCTGTTGGTCCTCTA
CCACAGACATGAGCAACGGCAACATGGAAGACAGCAACAGTTCCCATTCA
ATCGCCTTGATCATTTTGACTTTCTTTGCAGGCTCGATTAATAACTCCTC
CTCACTCTACCTCTACCCCTTCGTCGCGCAATGGGAAAGTCGCTACATCT
CCGCCCTAGCCACAGGAGAGGGCTTATCAGGCATATTGGTATCTTTATTG
GCGCTCGCTCAAAATGTAGGGGGGAGGCATCCGAGGTTTTCGGTAACTGC
ATTTTTCCAGGGCGTCAGTGCCTTTTACCTCTTTTCGGTGCTTGGCTTCT
CGTACCTCTTAAGGGAGCAGAAACGACAGGAAGCACGCAAGATGACCTCA
ACAGCAACAGCGCCGAGAGCAGCAGCAACAGTAGCAGAGGAAACAAGACA
CGCATCCGACGTATCAGCTTATAAACGCCTCCTCCTCCTCCACCAAAGCA
CCACCCACGAGGAAAACGAAGAGAGCACCCTCGTCCTCCCTCTCTCCTCC
CCATCTTTCTCCTTCTCCCCCTCCGTTCCCAAAGAGAAACCCGTCCTCCA
CCTTATTTACCCTCTATTACTTGCTCAATTCGGAATCAGTGCCTGGGCCT
ATGGCGTCATTCCTGCCCTCACCCCAATCTCGACAGGGGGGTATCAACAT
AGTGGGAAGATATTACAATTTTCATCCTTTGTCTCCATGGCACTCGATCC
ACTCTCGCGGGCTTTGACTCACTATTGTCGATGTTATCGTCTTGTTTTGC
TGTTTGGAATTGTGAATTTGCTGGCGATACTCTTGGCGGTGGCGGCAGGG
ATGGCCCCCCGACCTCCCTTTTGGGAGTGGGAGGGAGGAGGGGTGTTTGT
GGTTGTTGTGAATGGAGGGTTCACGGCGGCATTTGCGTTCTGTTCAACGA
TGTTTTACTTTAGCATTCGTTTGGCGCTGCAATTGCGGAGTGAGCAAGAG
GAGGAGAACGGAAAGGAAGGGAGAGAGAGTGGGGCGGGAGGGGGAGTGAT
GGGGGTGCAGGCGGCGGCTGCGTTTGAGACGTGTGCTATGAAGGAGGGAG
AGGAGACGGAGGAAGGGGAGCAAGGAAACGAAGTTGGTAGTGACAGAGTA
GATTTTGGTGTGCCCGCATCGACGGAGGAGGGGGGAAGGGATGAAGGAAG
AGAAGACGAGGAGAAGCAGCAGTTGGAGCGAGGGCAGCTGTTGAGATGGC
AGGAGGGATTCAGGTGGTCGAGTTTTGTGATCCAGATAGGGGCATTCGTG
GGTGCCTTGCTGACATTTCTGCTTGTCAGGTAGATGGCAAGCGTCATTCG
CCACTCCTCTTCGTCCTTTCCCCCAAAGCTCCCGCCTGCCCCTCCACCAT
GGGCACTTCATGCTGCCTTCACGGCCCTGGGTCTGTCGTCCTTTATGCTG
TCAAATGCACTATGGGCGGAGATGGCAGCCTTTGTTGCTGCGTTGCCGGA
AGCCGATAAGCTAGGAAGCTATTTGCTATTGTCGCTCCAG

Synonyms

Publications