jgi.p|Nanoce1779_2|564445, mRNA_3523 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|564445
Unique NamemRNA_3523
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length360
Alignment locationscaffold_6:569744..570168 +

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Properties
Property NameValue
TranscriptId564531
TrackFilteredModels2
ProteinId564445
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:569744..570168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564445gene_3523Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564445mRNA_3523-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3523CDS_3523Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3523 ID=mRNA_3523|Name=jgi.p|Nanoce1779_2|564445|organism=Nannochloropsis oceanica|type=mRNA|length=360bp
ATGACAAATCCGTCCATTCCCTTGCGCATCCCTAGTCCTGATGAAGGAAA
TGATGATGATATGGAGGAGGAGGCGGAGGAGGAGGAGGAGGAGAAGGAAG
AGGAGCTCAGTGAGGAGGGTGGTGTTGATAGGAGCCATTTGCAAGGCTTT
AGCACGAAAGGCATCGACGCTTCCCTCGTGGATGAGGCCGAGACGGACGA
GCTTCCGGCCGAGGGTCATGTTGTTGCTCTGTTTTGGGTGGGTGGAGTAA
GAGTGGGTGAAGAAAAGGCGATGAAAGGGTGGGATGGTAGCCGAGATGGA
GCTGCCGGCGGCTGTAGCATGCGCGTGACGCAAGGGTTGGATCTTTCAGG
CTTCGCATAG
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protein sequence of jgi.p|Nanoce1779_2|564445

>mRNA_3523-protein ID=mRNA_3523-protein|Name=jgi.p|Nanoce1779_2|564445|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MTNPSIPLRIPSPDEGNDDDMEEEAEEEEEEKEEELSEEGGVDRSHLQGF
STKGIDASLVDEAETDELPAEGHVVALFWVGGVRVGEEKAMKGWDGSRDG
AAGGCSMRVTQGLDLSGFA*
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mRNA from alignment at scaffold_6:569744..570168+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3523 ID=mRNA_3523|Name=jgi.p|Nanoce1779_2|564445|organism=Nannochloropsis oceanica|type=mRNA|length=425bp|location=Sequence derived from alignment at scaffold_6:569744..570168+ (Nannochloropsis oceanica)
ATGACAAATCCGTCCATTCCCTTGCGCATCCCTAGTCCTGATGAAGGAAA
TGATGATGATATGGAGGAGGAGGCGGAGGAGGAGGAGGAGGAGAAGGAAG
AGGAGGTTGAGCTGTATTCTCCTGCCGTCGCATAGGCTTGGCGGTACCGT
TGCTTGATTGTGTGGTGCAGCTCAGTGAGGAGGGTGGTGTTGATAGGAGC
CATTTGCAAGGCTTTAGCACGAAAGGCATCGACGCTTCCCTCGTGGATGA
GGCCGAGACGGACGAGCTTCCGGCCGAGGGTCATGTTGTTGCTCTGTTTT
GGGTGGGTGGAGTAAGAGTGGGTGAAGAAAAGGCGATGAAAGGGTGGGAT
GGTAGCCGAGATGGAGCTGCCGGCGGCTGTAGCATGCGCGTGACGCAAGG
GTTGGATCTTTCAGGCTTCGCATAG
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Coding sequence (CDS) from alignment at scaffold_6:569744..570168+

>mRNA_3523 ID=mRNA_3523|Name=jgi.p|Nanoce1779_2|564445|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_6:569744..570168+ (Nannochloropsis oceanica)
ATGACAAATCCGTCCATTCCCTTGCGCATCCCTAGTCCTGATGAAGGAAA
TGATGATGATATGGAGGAGGAGGCGGAGGAGGAGGAGGAGGAGAAGGAAG
AGGAGCTCAGTGAGGAGGGTGGTGTTGATAGGAGCCATTTGCAAGGCTTT
AGCACGAAAGGCATCGACGCTTCCCTCGTGGATGAGGCCGAGACGGACGA
GCTTCCGGCCGAGGGTCATGTTGTTGCTCTGTTTTGGGTGGGTGGAGTAA
GAGTGGGTGAAGAAAAGGCGATGAAAGGGTGGGATGGTAGCCGAGATGGA
GCTGCCGGCGGCTGTAGCATGCGCGTGACGCAAGGGTTGGATCTTTCAGG
CTTCGCATAGATGACAAATCCGTCCATTCCCTTGCGCATCCCTAGTCCTG
ATGAAGGAAATGATGATGATATGGAGGAGGAGGCGGAGGAGGAGGAGGAG
GAGAAGGAAGAGGAGCTCAGTGAGGAGGGTGGTGTTGATAGGAGCCATTT
GCAAGGCTTTAGCACGAAAGGCATCGACGCTTCCCTCGTGGATGAGGCCG
AGACGGACGAGCTTCCGGCCGAGGGTCATGTTGTTGCTCTGTTTTGGGTG
GGTGGAGTAAGAGTGGGTGAAGAAAAGGCGATGAAAGGGTGGGATGGTAG
CCGAGATGGAGCTGCCGGCGGCTGTAGCATGCGCGTGACGCAAGGGTTGG
ATCTTTCAGGCTTCGCATAG
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Synonyms
Publications