jgi.p|Nanoce1779_2|582453, mRNA_3521 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582453
Unique Name	mRNA_3521
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1474
Alignment location	scaffold_6:563125..564975 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582539
Track	FilteredModels2
ProteinId	582453

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:563125..564975 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582453	gene_3521	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582453	mRNA_3521-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3521	CDS_3521	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:563125..564975-
coding sequence from alignment at scaffold_6:563125..564975-

mRNA sequence

>mRNA_3521 ID=mRNA_3521|Name=jgi.p|Nanoce1779_2|582453|organism=Nannochloropsis oceanica|type=mRNA|length=1474bp
ACAGAAATAGAAATCGCGTCGAAGGCATGATGATGCGGATGCCTGTGTTG
CTAAGCGCGGCGGCCGTGATGTGCCTCCTACCCGCCAGCACTGCATTTCT
GGTTCCTTCTGCAGAGCTGTCTCGTCGGAGCGCCCTTGGCGGCCGACGAG
GAGACTTGGGTGCCCGAGGCACATTTTCTAGCGGTGAGTTCGACAAGGGC
GGTCTCTTCGCCAGCAGCGACGGGTTTCCGTCTTTAGGTGACGGCTTCCC
CAGCATTGGCTCTTCAGGCTCGTCTTCATCCTCGTCCTCGTCCGGGACTG
GCTTTCCTAGCATCGGTGTCTCTTCTCTGAGCACGCCCCGACGGGGCGTG
CTCATTCAGAACATGCCCGCGGACTCCAATATCAAAATTCGCATTTTGGA
CAGGGAGCACAAGTTGGGTATCACGGGGGTAGTTGAGACGATCGCCGTGG
TGAAAGACACGCGATTTGCCCTGTGCCGGACCAAAGACCGGGCGGCTGCC
ATTCTGGATGAATTCGTCTTTCCTGTCGACGTGGACTCCCAGTCCATGTC
CGCGCTCCTTCGTCGTGCTAACCGCATCTTGAAAAAGGATGGTGTGGAGC
TGCTCTGGACTGCGAGTACCTTGACGGTTCGGGGCCTGGAGCGACCGCAG
ACGGAGTACCTGTCTTGGAAGCAGCCGTTCAACGTGCAGCAGCAGCAGGG
ATTGTCCCACCTCGAGGCACGTCTGCAGGAGGCCATTAGACAGGGACAGA
ATGGAGGGATGCCGGGAGGAGTCGAAGAGGAGGATGGAAGTGGTGGTATG
GAAGGGGTCCTGGTAGAGGCGGAGGCTGCGGAGGCTGCGGCTATTCTGGA
GGCAGAGGAGGAGGCAGCAGCGAGCATGGACCGACTGGATGCTGCGTTCT
TTGCAGACGTGAATGACGAGGATTATGCGACTGACGCCGCGGAAGGGCTT
GATAAGCGGAGCCCATTGATGGAGTCGGAAATGTTATGTGACTTCGAGTT
TCAGGGGTCGAAGTACCGGGTGGTGGTATACCAGGAGCCTGTGTCGGTTT
TGGGACAGTGGATGCCGGATGGCACATGGCGATTATTGAAGAGCGTGGAG
GCGGAGTTGGTGGAGGACGCGTTGGCTTTTAAGGGACTACAGAATGTGGA
TGTCGAGCTTCTGGGGTCGGACTGAGTAAGGGAGTAGGAGTAGGACGGGA
GGGAAGAGGGAGGACAGAGAAGGACAAGGATGTACATGAGTGAGAGCGGG
CGAGAGAAAGGGGGAAGAAATAAGTTTATCACAACTTTATCACACACTTA
AAATTGATCGGAGCATACATACAAATAATCTGAGAGTTTGTTGGAACTTC
GTTTTCGGCCGCCTGTTGACGACCTTCCAAGATAAACATCGATTGAAAAG
AGCAGCCCCGCATGTAGACCAAGGAAAAACATACATTCAATGCAAAAGAA
CGAAAACGTAAACTTATAGACGAA

protein sequence of jgi.p|Nanoce1779_2|582453

>mRNA_3521-protein ID=mRNA_3521-protein|Name=jgi.p|Nanoce1779_2|582453|organism=Nannochloropsis oceanica|type=polypeptide|length=383bp
MMMRMPVLLSAAAVMCLLPASTAFLVPSAELSRRSALGGRRGDLGARGTF
SSGEFDKGGLFASSDGFPSLGDGFPSIGSSGSSSSSSSSGTGFPSIGVSS
LSTPRRGVLIQNMPADSNIKIRILDREHKLGITGVVETIAVVKDTRFALC
RTKDRAAAILDEFVFPVDVDSQSMSALLRRANRILKKDGVELLWTASTLT
VRGLERPQTEYLSWKQPFNVQQQQGLSHLEARLQEAIRQGQNGGMPGGVE
EEDGSGGMEGVLVEAEAAEAAAILEAEEEAAASMDRLDAAFFADVNDEDY
ATDAAEGLDKRSPLMESEMLCDFEFQGSKYRVVVYQEPVSVLGQWMPDGT
WRLLKSVEAELVEDALAFKGLQNVDVELLGSD*

mRNA from alignment at scaffold_6:563125..564975-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3521 ID=mRNA_3521|Name=jgi.p|Nanoce1779_2|582453|organism=Nannochloropsis oceanica|type=mRNA|length=1851bp|location=Sequence derived from alignment at scaffold_6:563125..564975- (Nannochloropsis oceanica)
ACAGAAATAGAAATCGCGTCGAAGGCATGATGATGCGGATGCCTGTGTTG
CTAAGCGCGGCGGCCGTGATGTGCCTCCTACCCGCCAGCACTGCATTTCT
GGTTCCTTCTGCAGAGCTGTCTCGTCGGAGCGCCCTTGGCGGTACGTTTT
GGTTGAGCCAGTGAAGCGTAGAACAAAATGCAGTCGAAGTTACTTGTGTC
AGCAGACATGCCTGTCTTTGCGTTACCAAACCTTATCTGACGTCTGTTGC
CCCTTCCCTCCCGTTCCTCGTACAGGCCGACGAGGAGACTTGGGTGCCCG
AGGGTATGTTTGTCGTAGGGATATTGGATCGTGGGTATGGGGGTTTTCTG
TCTTCCGACGAAGCAAGGCGGGAAAGTGGGAGGAAGGCGGGGAAAACAGC
ATTACCTTGCAGCTCATGTGCATTTGGGACAGAAGACGAGAGATTCGTAC
AAATTCCCCTGGTCGATGAACCCATATAGAAGTATCTGACACCAGCATTA
TCCCCTTCTTTCCCCCTCCGATCTCTCTTATTTACGACCACAACAGCACA
TTTTCTAGCGGTGAGTTCGACAAGGGCGGTCTCTTCGCCAGCAGCGACGG
GTTTCCGTCTTTAGGTGACGGCTTCCCCAGCATTGGCTCTTCAGGCTCGT
CTTCATCCTCGTCCTCGTCCGGGACTGGCTTTCCTAGCATCGGTGTCTCT
TCTCTGAGCACGCCCCGACGGGGCGTGCTCATTCAGAACATGCCCGCGGA
CTCCAATATCAAAATTCGCATTTTGGACAGGGAGCACAAGTTGGGTATCA
CGGGGGTAGTTGAGACGATCGCCGTGGTGAAAGACACGCGATTTGCCCTG
TGCCGGACCAAAGACCGGGCGGCTGCCATTCTGGATGAATTCGTCTTTCC
TGTCGACGTGGACTCCCAGTCCATGTCCGCGCTCCTTCGTCGTGCTAACC
GCATCTTGAAAAAGGATGGTGTGGAGCTGCTCTGGACTGCGAGTACCTTG
ACGGTTCGGGGCCTGGAGCGACCGCAGACGGAGTACCTGTCTTGGAAGCA
GCCGTTCAACGTGCAGCAGCAGCAGGGATTGTCCCACCTCGAGGCACGTC
TGCAGGAGGCCATTAGACAGGGACAGAATGGAGGGATGCCGGGAGGAGTC
GAAGAGGAGGATGGAAGTGGTGGTATGGAAGGGGTCCTGGTAGAGGCGGA
GGCTGCGGAGGCTGCGGCTATTCTGGAGGCAGAGGAGGAGGCAGCAGCGA
GCATGGACCGACTGGATGCTGCGTTCTTTGCAGACGTGAATGACGAGGAT
TATGCGACTGACGCCGCGGAAGGGCTTGATAAGCGGAGCCCATTGATGGA
GTCGGAAATGTTATGTGACTTCGAGTTTCAGGGGTCGAAGTACCGGGTGG
TGGTATACCAGGAGCCTGTGTCGGTTTTGGGACAGTGGATGCCGGATGGC
ACATGGCGATTATTGAAGAGCGTGGAGGCGGAGTTGGTGGAGGACGCGTT
GGCTTTTAAGGGACTACAGAATGTGGATGTCGAGCTTCTGGGGTCGGACT
GAGTAAGGGAGTAGGAGTAGGACGGGAGGGAAGAGGGAGGACAGAGAAGG
ACAAGGATGTACATGAGTGAGAGCGGGCGAGAGAAAGGGGGAAGAAATAA
GTTTATCACAACTTTATCACACACTTAAAATTGATCGGAGCATACATACA
AATAATCTGAGAGTTTGTTGGAACTTCGTTTTCGGCCGCCTGTTGACGAC
CTTCCAAGATAAACATCGATTGAAAAGAGCAGCCCCGCATGTAGACCAAG
GAAAAACATACATTCAATGCAAAAGAACGAAAACGTAAACTTATAGACGA
A

Coding sequence (CDS) from alignment at scaffold_6:563125..564975-

>mRNA_3521 ID=mRNA_3521|Name=jgi.p|Nanoce1779_2|582453|organism=Nannochloropsis oceanica|type=CDS|length=3447bp|location=Sequence derived from alignment at scaffold_6:563125..564975- (Nannochloropsis oceanica)
CACATTTTCTAGCGGTGAGTTCGACAAGGGCGGTCTCTTCGCCAGCAGCG
ACGGGTTTCCGTCTTTAGGTGACGGCTTCCCCAGCATTGGCTCTTCAGGC
TCGTCTTCATCCTCGTCCTCGTCCGGGACTGGCTTTCCTAGCATCGGTGT
CTCTTCTCTGAGCACGCCCCGACGGGGCGTGCTCATTCAGAACATGCCCG
CGGACTCCAATATCAAAATTCGCATTTTGGACAGGGAGCACAAGTTGGGT
ATCACGGGGGTAGTTGAGACGATCGCCGTGGTGAAAGACACGCGATTTGC
CCTGTGCCGGACCAAAGACCGGGCGGCTGCCATTCTGGATGAATTCGTCT
TTCCTGTCGACGTGGACTCCCAGTCCATGTCCGCGCTCCTTCGTCGTGCT
AACCGCATCTTGAAAAAGGATGGTGTGGAGCTGCTCTGGACTGCGAGTAC
CTTGACGGTTCGGGGCCTGGAGCGACCGCAGACGGAGTACCTGTCTTGGA
AGCAGCCGTTCAACGTGCAGCAGCAGCAGGGATTGTCCCACCTCGAGGCA
CGTCTGCAGGAGGCCATTAGACAGGGACAGAATGGAGGGATGCCGGGAGG
AGTCGAAGAGGAGGATGGAAGTGGTGGTATGGAAGGGGTCCTGGTAGAGG
CGGAGGCTGCGGAGGCTGCGGCTATTCTGGAGGCAGAGGAGGAGGCAGCA
GCGAGCATGGACCGACTGGATGCTGCGTTCTTTGCAGACGTGAATGACGA
GGATTATGCGACTGACGCCGCGGAAGGGCTTGATAAGCGGAGCCCATTGA
TGGAGTCGGAAATGTTATGTGACTTCGAGTTTCAGGGGTCGAAGTACCGG
GTGGTGGTATACCAGGAGCCTGTGTCGGTTTTGGGACAGTGGATGCCGGA
TGGCACATGGCGATTATTGAAGAGCGTGGAGGCGGAGTTGGTGGAGGACG
CGTTGGCTTTTAAGGGACTACAGAATGTGGATGTCGAGCTTCTGGGGTCG
GACTGAGCCGACGAGGAGACTTGGGTGCCCGAGGATGATGATGCGGATGC
CTGTGTTGCTAAGCGCGGCGGCCGTGATGTGCCTCCTACCCGCCAGCACT
GCATTTCTGGTTCCTTCTGCAGAGCTGTCTCGTCGGAGCGCCCTTGGCGC
ACATTTTCTAGCGGTGAGTTCGACAAGGGCGGTCTCTTCGCCAGCAGCGA
CGGGTTTCCGTCTTTAGGTGACGGCTTCCCCAGCATTGGCTCTTCAGGCT
CGTCTTCATCCTCGTCCTCGTCCGGGACTGGCTTTCCTAGCATCGGTGTC
TCTTCTCTGAGCACGCCCCGACGGGGCGTGCTCATTCAGAACATGCCCGC
GGACTCCAATATCAAAATTCGCATTTTGGACAGGGAGCACAAGTTGGGTA
TCACGGGGGTAGTTGAGACGATCGCCGTGGTGAAAGACACGCGATTTGCC
CTGTGCCGGACCAAAGACCGGGCGGCTGCCATTCTGGATGAATTCGTCTT
TCCTGTCGACGTGGACTCCCAGTCCATGTCCGCGCTCCTTCGTCGTGCTA
ACCGCATCTTGAAAAAGGATGGTGTGGAGCTGCTCTGGACTGCGAGTACC
TTGACGGTTCGGGGCCTGGAGCGACCGCAGACGGAGTACCTGTCTTGGAA
GCAGCCGTTCAACGTGCAGCAGCAGCAGGGATTGTCCCACCTCGAGGCAC
GTCTGCAGGAGGCCATTAGACAGGGACAGAATGGAGGGATGCCGGGAGGA
GTCGAAGAGGAGGATGGAAGTGGTGGTATGGAAGGGGTCCTGGTAGAGGC
GGAGGCTGCGGAGGCTGCGGCTATTCTGGAGGCAGAGGAGGAGGCAGCAG
CGAGCATGGACCGACTGGATGCTGCGTTCTTTGCAGACGTGAATGACGAG
GATTATGCGACTGACGCCGCGGAAGGGCTTGATAAGCGGAGCCCATTGAT
GGAGTCGGAAATGTTATGTGACTTCGAGTTTCAGGGGTCGAAGTACCGGG
TGGTGGTATACCAGGAGCCTGTGTCGGTTTTGGGACAGTGGATGCCGGAT
GGCACATGGCGATTATTGAAGAGCGTGGAGGCGGAGTTGGTGGAGGACGC
GTTGGCTTTTAAGGGACTACAGAATGTGGATGTCGAGCTTCTGGGGTCGG
ACTGAGCCGACGAGGAGACTTGGGTGCCCGAGGATGATGATGCGGATGCC
TGTGTTGCTAAGCGCGGCGGCCGTGATGTGCCTCCTACCCGCCAGCACTG
CATTTCTGGTTCCTTCTGCAGAGCTGTCTCGTCGGAGCGCCCTTGGCGCA
CATTTTCTAGCGGTGAGTTCGACAAGGGCGGTCTCTTCGCCAGCAGCGAC
GGGTTTCCGTCTTTAGGTGACGGCTTCCCCAGCATTGGCTCTTCAGGCTC
GTCTTCATCCTCGTCCTCGTCCGGGACTGGCTTTCCTAGCATCGGTGTCT
CTTCTCTGAGCACGCCCCGACGGGGCGTGCTCATTCAGAACATGCCCGCG
GACTCCAATATCAAAATTCGCATTTTGGACAGGGAGCACAAGTTGGGTAT
CACGGGGGTAGTTGAGACGATCGCCGTGGTGAAAGACACGCGATTTGCCC
TGTGCCGGACCAAAGACCGGGCGGCTGCCATTCTGGATGAATTCGTCTTT
CCTGTCGACGTGGACTCCCAGTCCATGTCCGCGCTCCTTCGTCGTGCTAA
CCGCATCTTGAAAAAGGATGGTGTGGAGCTGCTCTGGACTGCGAGTACCT
TGACGGTTCGGGGCCTGGAGCGACCGCAGACGGAGTACCTGTCTTGGAAG
CAGCCGTTCAACGTGCAGCAGCAGCAGGGATTGTCCCACCTCGAGGCACG
TCTGCAGGAGGCCATTAGACAGGGACAGAATGGAGGGATGCCGGGAGGAG
TCGAAGAGGAGGATGGAAGTGGTGGTATGGAAGGGGTCCTGGTAGAGGCG
GAGGCTGCGGAGGCTGCGGCTATTCTGGAGGCAGAGGAGGAGGCAGCAGC
GAGCATGGACCGACTGGATGCTGCGTTCTTTGCAGACGTGAATGACGAGG
ATTATGCGACTGACGCCGCGGAAGGGCTTGATAAGCGGAGCCCATTGATG
GAGTCGGAAATGTTATGTGACTTCGAGTTTCAGGGGTCGAAGTACCGGGT
GGTGGTATACCAGGAGCCTGTGTCGGTTTTGGGACAGTGGATGCCGGATG
GCACATGGCGATTATTGAAGAGCGTGGAGGCGGAGTTGGTGGAGGACGCG
TTGGCTTTTAAGGGACTACAGAATGTGGATGTCGAGCTTCTGGGGTCGGA
CTGAGCCGACGAGGAGACTTGGGTGCCCGAGGATGATGATGCGGATGCCT
GTGTTGCTAAGCGCGGCGGCCGTGATGTGCCTCCTACCCGCCAGCACTGC
ATTTCTGGTTCCTTCTGCAGAGCTGTCTCGTCGGAGCGCCCTTGGCG

Synonyms

Publications