jgi.p|Nanoce1779_2|577080, mRNA_352 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577080
Unique Name	mRNA_352
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	932
Alignment location	scaffold_3:868699..870138 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	577166
Track	FilteredModels2
ProteinId	577080

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:868699..870138 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577080	gene_352	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577080	mRNA_352-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_352	CDS_352	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:868699..870138+
coding sequence from alignment at scaffold_3:868699..870138+

mRNA sequence

>mRNA_352 ID=mRNA_352|Name=jgi.p|Nanoce1779_2|577080|organism=Nannochloropsis oceanica|type=mRNA|length=932bp
AGGTCCATTTGCTTGCGCTTTGCCTGCTTGCGTGTCCGCTCAGTGATTTC
TTTGCCTAGAGCATCGCCGGCGTCATCATCGCACTCCTCCTTCGAACGCT
AGCGTCTCAATAACTTGAGTTACCCAGGCCACAATGAAGATTGTGGCCAT
TTCCTTGCATCGCTACCAGAAAGACACGCCTGAGCCTATCATCTTAACGT
CGGCCACGGAGCTCGAGAGCTTTGGCTACTTCCAGCGTAATGGTATCCGT
GAGATGTGCCGCTTTATGAGCAAGACTCTTATCAAACGCTGCCAGCCGGG
TCAACGGCAAACCATTCAGCATGAAGAATACAACGTGCATTGTCACTTGA
GGACAGACGGTCTTGGCGGCACCGTCATTGCCGACTTGGAGTATCCCCCA
CGCGTCGCCTTCGTCCTCCTCTCCACCCTCCTCGAGCGCTTCGCCGTCGA
TATCACCAACTGGTCTTCCGTCACACAGCAAGAATCTATTACTTACCCGC
CCATTCAAGAAGCCATTCGAGAATATCAAGACCCGGCCAAGGCCGATAAG
ATTACGAAAATCCGCCGCGACCTGGACGAGACGACGGAGATTTTGCACAA
GACAATCGACGCAGTACTTGAGCGGGGGGTCAAGCTGGACGAGCTAGTAG
ACAGGTCCAACGATCTGAGTAGTCAAAGCAAGCTTTTCTACAAGCAGGCA
CGCAAGACCAATTCATGCTGCACCATCTCATGAGGAGGAAGAGAGAGATT
GAAGGAGAAAGGGGTGTTACAAGCAACCAGCAAATGATGACAAATTTATG
GCATTTTACGAGAGAGACAGGCAGGTGGAAGAGGAACGTTTTTTGGGGGG
AACAGTGGTAGGCAAAGGGGGATGGGGTTGCCGGCCCGGAGCCCTAACCC
TAACCCTGGGTTTTATGTATAGGAAGGTGAAG

protein sequence of jgi.p|Nanoce1779_2|577080

>mRNA_352-protein ID=mRNA_352-protein|Name=jgi.p|Nanoce1779_2|577080|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MKIVAISLHRYQKDTPEPIILTSATELESFGYFQRNGIREMCRFMSKTLI
KRCQPGQRQTIQHEEYNVHCHLRTDGLGGTVIADLEYPPRVAFVLLSTLL
ERFAVDITNWSSVTQQESITYPPIQEAIREYQDPAKADKITKIRRDLDET
TEILHKTIDAVLERGVKLDELVDRSNDLSSQSKLFYKQARKTNSCCTIS*

mRNA from alignment at scaffold_3:868699..870138+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_352 ID=mRNA_352|Name=jgi.p|Nanoce1779_2|577080|organism=Nannochloropsis oceanica|type=mRNA|length=1440bp|location=Sequence derived from alignment at scaffold_3:868699..870138+ (Nannochloropsis oceanica)
AGGTCCATTTGCTTGCGCTTTGCCTGCTTGCGTGTCCGCTCAGTGATTTC
TTTGCCTAGAGCATCGCCGGCGTCATCATCGCACTCCTCCTTCGAACGCT
AGCGTCTCAATAACTTGAGTTACCCAGGCCACAATGAAGATTGTGGCCAT
TTCCTTGCATCGCTACCAGAAAGACACGCCTGAGCCTATCATCTTAACGT
CGGCCACGGAGCTCGAGAGCTTTGGCTACTTCCAGCGTAATGGGTAAGGA
AGCGAAGGGGGGGAAAGGAGGGGGGGAATTATTCCGGCGCATAAAGCGAG
AAGCAACAACACACCCCACTCATGCTGCTTCGTCTATGCCCTGTCCGAAA
CTCATTCAATGCGCTCTTTTCCACACCATTTTTCACACCATCCATCTATA
TTACAGTATCCGTGAGATGTGCCGCTTTATGAGCAAGACTCTTATCAAAC
GCTGCCAGCCGGGTCAACGGCAAACCATTCAGCATGAAGGTACATCATAT
GCACATCTCCGTGACCATTGATGCTGCTGCCATAGCTTTTGTGATATTTG
TTTGTTTTTCCTTTATCGTCAGTATTTCAAATTATATGTTAACTCAAATA
AACAGAATACAACGTGCATTGTCACTTGAGGACAGACGGTCTTGGCGGCA
CCGTCATTGCCGACTTGGAGTATCCCCCACGCGTCGCCTTCGTCCTCCTC
TCCACCCTCCTCGAGCGCTTCGCCGTCGATATCACGTACGTCCAGAAAGT
GGTGAGGGGGAATGAGGGAAAGCTCGCCACCTTCATAACGACTAGCACGC
CACACGCGCTTATTCCTTCATTCTCGCTTTCCACCAACTGCCGACAGCAA
CTGGTCTTCCGTCACACAGCAAGAATCTATTACTTACCCGCCCATTCAAG
AAGCCATTCGAGAATATCAAGACCCGGCCAAGGCCGATAAGATTACGAAA
ATCCGCCGCGACCTGGACGAGACGACGGAGATTTTGGTGAGGAGTTGGGG
GGGGGGTATGACGGAGTGTTCTCAAACGAGAAATCGAGAAGGTCGAGCAA
CAACTCATTTCACGCCTCTTTCCCTTTGCTTTCTTTCTTCGGGCTACACA
CAGCACAAGACAATCGACGCAGTACTTGAGCGGGGGGTCAAGCTGGACGA
GCTAGTAGACAGGTCCAACGATCTGAGTAGTCAAAGCAAGCTTTTCTACA
AGCAGGCACGCAAGACCAATTCATGCTGCACCATCTCATGAGGAGGAAGA
GAGAGATTGAAGGAGAAAGGGGTGTTACAAGCAACCAGCAAATGATGACA
AATTTATGGCATTTTACGAGAGAGACAGGCAGGTGGAAGAGGAACGTTTT
TTGGGGGGAACAGTGGTAGGCAAAGGGGGATGGGGTTGCCGGCCCGGAGC
CCTAACCCTAACCCTGGGTTTTATGTATAGGAAGGTGAAG

Coding sequence (CDS) from alignment at scaffold_3:868699..870138+

>mRNA_352 ID=mRNA_352|Name=jgi.p|Nanoce1779_2|577080|organism=Nannochloropsis oceanica|type=CDS|length=3000bp|location=Sequence derived from alignment at scaffold_3:868699..870138+ (Nannochloropsis oceanica)
ATGAAGATTGTGGCCATTTCCTTGCATCGCTACCAGAAAGACACGCCTGA
GCCTATCATCTTAACGTCGGCCACGGAGCTCGAGAGCTTTGGCTACTTCC
AGCGTAATGGTATCCGTGAGATGTGCCGCTTTATGAGCAAGACTCTTATC
AAACGCTGCCAGCCGGGTCAACGGCAAACCATTCAGCATGAAGAATACAA
CGTGCATTGTCACTTGAGGACAGACGGTCTTGGCGGCACCGTCATTGCCG
ACTTGGAGTATCCCCCACGCGTCGCCTTCGTCCTCCTCTCCACCCTCCTC
GAGCGCTTCGCCGTCGATATCACCAACTGGTCTTCCGTCACACAGCAAGA
ATCTATTACTTACCCGCCCATTCAAGAAGCCATTCGAGAATATCAAGACC
CGGCCAAGGCCGATAAGATTACGAAAATCCGCCGCGACCTGGACGAGACG
ACGGAGATTTTGCACAAGACAATCGACGCAGTACTTGAGCGGGGGGTCAA
GCTGGACGAGCTAGTAGACAGGTCCAACGATCTGAGTAGTCAAAGCAAGC
TTTTCTACAAGCAGGCACGCAAGACCAATTCATGCTGCACCATCTCATGA
ATGAAGATTGTGGCCATTTCCTTGCATCGCTACCAGAAAGACACGCCTGA
GCCTATCATCTTAACGTCGGCCACGGAGCTCGAGAGCTTTGGCTACTTCC
AGCGTAATGGTATCCGTGAGATGTGCCGCTTTATGAGCAAGACTCTTATC
AAACGCTGCCAGCCGGGTCAACGGCAAACCATTCAGCATGAAGAATACAA
CGTGCATTGTCACTTGAGGACAGACGGTCTTGGCGGCACCGTCATTGCCG
ACTTGGAGTATCCCCCACGCGTCGCCTTCGTCCTCCTCTCCACCCTCCTC
GAGCGCTTCGCCGTCGATATCACCAACTGGTCTTCCGTCACACAGCAAGA
ATCTATTACTTACCCGCCCATTCAAGAAGCCATTCGAGAATATCAAGACC
CGGCCAAGGCCGATAAGATTACGAAAATCCGCCGCGACCTGGACGAGACG
ACGGAGATTTTGCACAAGACAATCGACGCAGTACTTGAGCGGGGGGTCAA
GCTGGACGAGCTAGTAGACAGGTCCAACGATCTGAGTAGTCAAAGCAAGC
TTTTCTACAAGCAGGCACGCAAGACCAATTCATGCTGCACCATCTCATGA
ATGAAGATTGTGGCCATTTCCTTGCATCGCTACCAGAAAGACACGCCTGA
GCCTATCATCTTAACGTCGGCCACGGAGCTCGAGAGCTTTGGCTACTTCC
AGCGTAATGGTATCCGTGAGATGTGCCGCTTTATGAGCAAGACTCTTATC
AAACGCTGCCAGCCGGGTCAACGGCAAACCATTCAGCATGAAGAATACAA
CGTGCATTGTCACTTGAGGACAGACGGTCTTGGCGGCACCGTCATTGCCG
ACTTGGAGTATCCCCCACGCGTCGCCTTCGTCCTCCTCTCCACCCTCCTC
GAGCGCTTCGCCGTCGATATCACCAACTGGTCTTCCGTCACACAGCAAGA
ATCTATTACTTACCCGCCCATTCAAGAAGCCATTCGAGAATATCAAGACC
CGGCCAAGGCCGATAAGATTACGAAAATCCGCCGCGACCTGGACGAGACG
ACGGAGATTTTGCACAAGACAATCGACGCAGTACTTGAGCGGGGGGTCAA
GCTGGACGAGCTAGTAGACAGGTCCAACGATCTGAGTAGTCAAAGCAAGC
TTTTCTACAAGCAGGCACGCAAGACCAATTCATGCTGCACCATCTCATGA
ATGAAGATTGTGGCCATTTCCTTGCATCGCTACCAGAAAGACACGCCTGA
GCCTATCATCTTAACGTCGGCCACGGAGCTCGAGAGCTTTGGCTACTTCC
AGCGTAATGGTATCCGTGAGATGTGCCGCTTTATGAGCAAGACTCTTATC
AAACGCTGCCAGCCGGGTCAACGGCAAACCATTCAGCATGAAGAATACAA
CGTGCATTGTCACTTGAGGACAGACGGTCTTGGCGGCACCGTCATTGCCG
ACTTGGAGTATCCCCCACGCGTCGCCTTCGTCCTCCTCTCCACCCTCCTC
GAGCGCTTCGCCGTCGATATCACCAACTGGTCTTCCGTCACACAGCAAGA
ATCTATTACTTACCCGCCCATTCAAGAAGCCATTCGAGAATATCAAGACC
CGGCCAAGGCCGATAAGATTACGAAAATCCGCCGCGACCTGGACGAGACG
ACGGAGATTTTGCACAAGACAATCGACGCAGTACTTGAGCGGGGGGTCAA
GCTGGACGAGCTAGTAGACAGGTCCAACGATCTGAGTAGTCAAAGCAAGC
TTTTCTACAAGCAGGCACGCAAGACCAATTCATGCTGCACCATCTCATGA
ATGAAGATTGTGGCCATTTCCTTGCATCGCTACCAGAAAGACACGCCTGA
GCCTATCATCTTAACGTCGGCCACGGAGCTCGAGAGCTTTGGCTACTTCC
AGCGTAATGGTATCCGTGAGATGTGCCGCTTTATGAGCAAGACTCTTATC
AAACGCTGCCAGCCGGGTCAACGGCAAACCATTCAGCATGAAGAATACAA
CGTGCATTGTCACTTGAGGACAGACGGTCTTGGCGGCACCGTCATTGCCG
ACTTGGAGTATCCCCCACGCGTCGCCTTCGTCCTCCTCTCCACCCTCCTC
GAGCGCTTCGCCGTCGATATCACCAACTGGTCTTCCGTCACACAGCAAGA
ATCTATTACTTACCCGCCCATTCAAGAAGCCATTCGAGAATATCAAGACC
CGGCCAAGGCCGATAAGATTACGAAAATCCGCCGCGACCTGGACGAGACG
ACGGAGATTTTGCACAAGACAATCGACGCAGTACTTGAGCGGGGGGTCAA
GCTGGACGAGCTAGTAGACAGGTCCAACGATCTGAGTAGTCAAAGCAAGC
TTTTCTACAAGCAGGCACGCAAGACCAATTCATGCTGCACCATCTCATGA

Synonyms

Publications