Properties
Property Name | Value |
TranscriptId | 363728 |
Track | FilteredModels2 |
ProteinId | 363642 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_6 | supercontig | scaffold_6:555671..558572 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3518 ID=mRNA_3518|Name=jgi.p|Nanoce1779_2|363642|organism=Nannochloropsis oceanica|type=mRNA|length=2563bp GTCGCAGTGATCACAGAGTACCACAATATTACTAAAAGAGTACTGTGTCG TTTCCTCACAAATCGTTTCTTCCAGCCAACTTGTCCCTTCTGCTAGCCTC GTGTGCTCGTGACATGGAACCCTCCCTGCAGGACCACAAGCAGGAAGATT AGAATGAGTACGAGAAGTGCTTCGCTGCCTTGCTCCTGCGGCAGTCGGTG CTCTACATGCAGTGAGCATGGCCGGGGGGGTAGTTATGATGATGGACCCA CTTTTTGATACCCCCACATATCATACAACACACCGCACTTGCCCCAACTC AGGCATTGGACCAAATCCAAGTACCATGCCGATTGGATTCAAACTTCTGG CGATGCTTGTCCTCTGCACTTTTTTCTTAATCGTCAGCGGGAGGACCAAC GTTTTAAGGGGCGGCAGCAGCAGGGAGCTCAGAAGGGACACCAAGACCAC TCTTGCTGGCGACAAGGGCAGCGCTAACGCCAATAAAATGGAAGTGACCA TCGATAAGAAGAAGAAGAAGGGCGCAGGTGCGGTGGCCGAGCCGGTGGAA TCAGTCCCCACAGAAAAAGGCCCGAAGGAGGGCAAGGCTGATATGGTCGA GAAGGATGACGAGTACGATGCTGATATGGATGATGACAACATGATTGACG GGCTTGAAGAGGGGGAAGGGAAAGATGTTGATGAGGACGAAGATGAGGGG AAAGAGCCGACCTCGGAGAAAAACGAAGAAGCGGACAAAGAGCCAAGCGA CCCTGCGACTGCTACGGCTTTGGAGGACGGACGAGAGGGCAAGGAGAGTG ACGCAACGGCGGAAGGGATGGATGAAACCAAGGATGCTGCTGACGACAAG GGAGAGGTGAAGGAGGAAGGAGACGAGGAGCAGGATGATGAGTCCAAACA GGGCAAGATGGGCTTGCTTCATGAAGCCACCACCACCAAGGGTGAGACAG CACCTGTCGCTGAAGCTGAAATAGGCACCGACACAGACAAGACCACCAGC GGCACAGGCGAGAGCAAGAAGGGTATCAGCGATGAAGTGAAGGAGGTGGA TGGGAATGCTGCTGCTACTACCGCTTCTGAGGCTGTTGCTGAGAGTTCCA AATCTAAAAGTGGGCCGCCGAAGTTGGAAGACGCGGAAGATGACAAGGAC ACGAAAGCGGACGCCGCTGCTGCTGACGCCTCTTCTGCCCTAGCTGAGGG CGCTGGTGAGACTAATGAGAAAGATGTTGTTGGCGAGGCTGACGTTGGAC CAGCAGACAGCAGCAGCAGCAGCAGCAGCAGCAACGATAAGAAGAAGAGC GTTGCCGAGGAAGAAATTACTGCTACCACCGCGACGGACGAAGGAAAGGA AAACACCGACAATAAGGCTGATGAAAATAAAGAAGGAAAGGCCGAGGCAA GCGAAAGAAAGAGAAATGGCGAAGCTGCAGGACCAGAGAAAAAAGAGAAG GGGGTAGACAGCGCCACAGTCGAAAAACCCACCGATGATGGCAAGGTGCC AGCCGCGCCCGACTCAGACTATTCTAATGTCCCCGACCCTGCATCTGCAG AGCAGGAGAAGCAGCAACAGAAACGGGAGCAGGATCAGCAGCAGCAGGAG CAGCATCAGCAGCAGCAGCAGCAGCAGCCGCAACAGCAAGTGGAGGTGAC GGAGGTGAAAGAGGTCAAGGAAGGGGATGTTGCTCCTGTGATATCTGAAT CAAGCACCGCCACAGGCACTGCTGGTACTGGTGATGCATGCGATCCGCAG ATCACGTGTAACGGGCATGGAAAGTGCAACGAGGATGGGAGCTGTCGTTG TTATCCTCCCTACACAGGGAGTGCGTGCTTGCGCGATGCATGCTTGGACA TTTGGGACTGCAACGAGTGCGTTGGCTCTAACTTGGGCTGTTACTTCTCT GACGGCGAGTGTCGCGGGGATGGATTGATTCGTCCGTCTTCGAAAAGCTC GCCTGTAAGATCGCAGCAGCAGGAGGAAGAGAAGATGCAACAGCATCAGA CGAGTGCAGGGTTGGGAGCTGGGGTGACGTCGAGGCGGGATTCAGGAGGG AGAAAGGAGCTTCAGTCTGGAGAGGATTTGTTCGCCGAACTGGGCATGGA GGCGCAGCCGCAGTTTAACTTGAAGAGGCAGAATGACGCAGGGCCGCCCG GGCAGCAAATGAGTTGCACGCGGAGCAGTCGGTTATCGGCGGCGGGGACG AGTCCGGTGAAGGGAGGGAGTACAGGAGGAGAGGGGTTGGCACCTGGCTG GATGGATGATGAGGATTTAGATATTTAGTCATGCGTAACAGACAAGAATG TTAACACGCAAGAGCGAAAAGGAGGGAGGACAAGACCAGCAAGGTGAGAG TTTTGCTCGAGGAGTGGTGGAGGACGAAGCAGACGGGACGAATGGCAAAG GTCAACGGAAGGAGGGGGCGAATTAAATGAATTTGTGTAGTTAGGAAGTC CTCTGAGGAGACGCGCGAGTAAAGAAAAAGCCGGATCTACATTAATGTGC AGGAAGGAAGAAACAAAAAAGTAGAGCTCCCTGTTGTGATAATAGCAGTA GCCCCTCCCCACG back to topprotein sequence of jgi.p|Nanoce1779_2|363642 >mRNA_3518-protein ID=mRNA_3518-protein|Name=jgi.p|Nanoce1779_2|363642|organism=Nannochloropsis oceanica|type=polypeptide|length=687bp MAGGVVMMMDPLFDTPTYHTTHRTCPNSGIGPNPSTMPIGFKLLAMLVLC TFFLIVSGRTNVLRGGSSRELRRDTKTTLAGDKGSANANKMEVTIDKKKK KGAGAVAEPVESVPTEKGPKEGKADMVEKDDEYDADMDDDNMIDGLEEGE GKDVDEDEDEGKEPTSEKNEEADKEPSDPATATALEDGREGKESDATAEG MDETKDAADDKGEVKEEGDEEQDDESKQGKMGLLHEATTTKGETAPVAEA EIGTDTDKTTSGTGESKKGISDEVKEVDGNAAATTASEAVAESSKSKSGP PKLEDAEDDKDTKADAAAADASSALAEGAGETNEKDVVGEADVGPADSSS SSSSSNDKKKSVAEEEITATTATDEGKENTDNKADENKEGKAEASERKRN GEAAGPEKKEKGVDSATVEKPTDDGKVPAAPDSDYSNVPDPASAEQEKQQ QKREQDQQQQEQHQQQQQQQPQQQVEVTEVKEVKEGDVAPVISESSTATG TAGTGDACDPQITCNGHGKCNEDGSCRCYPPYTGSACLRDACLDIWDCNE CVGSNLGCYFSDGECRGDGLIRPSSKSSPVRSQQQEEEKMQQHQTSAGLG AGVTSRRDSGGRKELQSGEDLFAELGMEAQPQFNLKRQNDAGPPGQQMSC TRSSRLSAAGTSPVKGGSTGGEGLAPGWMDDEDLDI* back to topmRNA from alignment at scaffold_6:555671..558572- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3518 ID=mRNA_3518|Name=jgi.p|Nanoce1779_2|363642|organism=Nannochloropsis oceanica|type=mRNA|length=2902bp|location=Sequence derived from alignment at scaffold_6:555671..558572- (Nannochloropsis oceanica) GTCGCAGTGATCACAGAGTACCACAATATTACTAAAAGAGTACTGTGTCG
TTTCCTCACAAATCGTTTCTTCCAGCCAACTTGTCCCTTCTGCTAGCCTC
GTGTGCTCGTGACATGGAACCCTCCCTGCAGGACCACAAGCAGGAAGATT
AGAATGAGTACGAGAAGTGCTTCGCTGCCTTGCTCCTGCGGCAGTCGGTG
CTCTACATGCAGTGAGCATGGCCGGGGGGGTAGTTATGATGATGGACCCA
CTTTTTGATACCCCCACATATCATACAACACACCGCACTTGCCCCAACTC
AGGCATTGGACCAAATCCAAGTACCATGCCGATTGGATTCAAACTTCTGG
CGATGCTTGTCCTCTGCACTTTTTTCTTAATCGTCAGCGGGAGGACCAAC
GTTTTAAGGGGCGGCAGCAGCAGGGAGCTCAGAAGGGACACCAAGACCAC
TCTTGCTGGCGACAAGGGCAGCGCTAACGCCAATAAAATGGAAGTGACCA
TCGATAAGAAGAAGAAGAAGGGCGCAGGTGCGGTGGCCGAGCCGGTGGAA
TCAGTCCCCACAGAAAAAGGCCCGAAGGAGGGCAAGGCTGATATGGTCGA
GAAGGATGACGAGTACGATGCTGATATGGATGATGACAACATGATTGACG
GGCTTGAAGAGGGGGAAGGGAAAGATGTTGATGAGGACGAAGATGAGGGG
AAAGAGCCGACCTCGGAGAAAAACGAAGAAGCGGACAAAGAGCCAAGCGA
CCCTGCGACTGCTACGGCTTTGGAGGACGGACGAGAGGGCAAGGAGAGTG
ACGCAACGGCGGAAGGGATGGATGAAACCAAGGATGCTGCTGACGACAAG
GGAGAGGTGAAGGAGGAAGGAGACGAGGAGCAGGATGATGAGTCCAAACA
GGGCAAGATGGGCTTGCTTCATGAAGCCACCACCACCAAGGGTGAGACAG
CACCTGTCGCTGAAGCTGAAATAGGCACCGACACAGACAAGACCACCAGC
GGCACAGGCGAGAGCAAGAAGGGTATCAGCGATGAAGTGAAGGAGGTGGA
TGGGAATGCTGCTGCTACTACCGCTTCTGAGGCTGTTGCTGAGAGTTCCA
AATCTAAAAGTGGGCCGCCGAAGTTGGAAGACGCGGAAGATGACAAGGAC
ACGAAAGCGGACGCCGCTGCTGCTGACGCCTCTTCTGCCCTAGCTGAGGG
CGCTGGTGAGACTAATGAGAAAGATGTTGTTGGCGAGGCTGACGTTGGAC
CAGCAGACAGCAGCAGCAGCAGCAGCAGCAGCAACGATAAGAAGAAGAGC
GTTGCCGAGGAAGAAATTACTGCTACCACCGCGACGGACGAAGGAAAGGA
AAACACCGACAATAAGGCTGATGAAAATAAAGAAGGAAAGGCCGAGGCAA
GCGAAAGAAAGAGAAATGGCGAAGCTGCAGGACCAGAGAAAAAAGAGAAG
GGGGTAGACAGCGCCACAGTCGAAAAACCCACCGATGATGGCAAGGTGCC
AGCCGCGCCCGACTCAGACTATTCTAATGTCCCCGACCCTGCATCTGCAG
AGCAGGAGAAGCAGCAACAGAAACGGGAGCAGGATCAGCAGCAGCAGGAG
CAGCATCAGCAGCAGCAGCAGCAGCAGCCGCAACAGCAAGTGGAGGTGAC
GGAGGTGAAAGAGGTCAAGGAAGGGGATGTTGCTCCTGTGATATCTGAAT
CAAGCACCGCCACAGGCACTGCTGGTACTGGTGATGCATGCGATCCGCAG
ATCACGTGTAACGGGCATGGAAAGTGCAACGAGGATGGGAGCTGTCGTTG
TTATCCTCCCTACACAGGGAGTGCGTGCTTGCGCGATGCATGCTTGGACA
TTTGGGACTGCAACGAGTGCGTTGGCTCTAACTTGGGCTGTTACTTCTCT
GACGGCGAGTGTCGCGGGGATGGATTGATAAGTCCTGAAGAAAGCACGTG
CCGCCCGGCGTGGCTGGCATCGGTGATGGCGTACATGCAATTTGCGTTTC
TGTTTGGGGTGGTGTTGTTGGTGGCGGGGGGGATGGTCTGGCGGAGTCGA
CGCGCGAGCATGGTGGCTGGAGGGAGGGAGGGAGGGCTCGGGGGGTTTAT
ACGGATGCCAACGGCTGGGGGAGGCCCGGAGGGAGAAGGGGAGAATTGGC
ATTGGGACCCTGAAGAGGATAGTGTGGAGCTGTTGAAGCAGTCGGGGGAG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGGCAGGAGGGGGGGAAGGGAAA
GGGGATTTATGCGTTGATTCGTCCGTCTTCGAAAAGCTCGCCTGTAAGAT
CGCAGCAGCAGGAGGAAGAGAAGATGCAACAGCATCAGACGAGTGCAGGG
TTGGGAGCTGGGGTGACGTCGAGGCGGGATTCAGGAGGGAGAAAGGAGCT
TCAGTCTGGAGAGGATTTGTTCGCCGAACTGGGCATGGAGGCGCAGCCGC
AGTTTAACTTGAAGAGGCAGAATGACGCAGGGCCGCCCGGGCAGCAAATG
AGTTGCACGCGGAGCAGTCGGTTATCGGCGGCGGGGACGAGTCCGGTGAA
GGGAGGGAGTACAGGAGGAGAGGGGTTGGCACCTGGCTGGATGGATGATG
AGGATTTAGATATTTAGTCATGCGTAACAGACAAGAATGTTAACACGCAA
GAGCGAAAAGGAGGGAGGACAAGACCAGCAAGGTGAGAGTTTTGCTCGAG
GAGTGGTGGAGGACGAAGCAGACGGGACGAATGGCAAAGGTCAACGGAAG
GAGGGGGCGAATTAAATGAATTTGTGTAGTTAGGAAGTCCTCTGAGGAGA
CGCGCGAGTAAAGAAAAAGCCGGATCTACATTAATGTGCAGGAAGGAAGA
AACAAAAAAGTAGAGCTCCCTGTTGTGATAATAGCAGTAGCCCCTCCCCA
CG back to topCoding sequence (CDS) from alignment at scaffold_6:555671..558572- >mRNA_3518 ID=mRNA_3518|Name=jgi.p|Nanoce1779_2|363642|organism=Nannochloropsis oceanica|type=CDS|length=4122bp|location=Sequence derived from alignment at scaffold_6:555671..558572- (Nannochloropsis oceanica) TTGATTCGTCCGTCTTCGAAAAGCTCGCCTGTAAGATCGCAGCAGCAGGA GGAAGAGAAGATGCAACAGCATCAGACGAGTGCAGGGTTGGGAGCTGGGG TGACGTCGAGGCGGGATTCAGGAGGGAGAAAGGAGCTTCAGTCTGGAGAG GATTTGTTCGCCGAACTGGGCATGGAGGCGCAGCCGCAGTTTAACTTGAA GAGGCAGAATGACGCAGGGCCGCCCGGGCAGCAAATGAGTTGCACGCGGA GCAGTCGGTTATCGGCGGCGGGGACGAGTCCGGTGAAGGGAGGGAGTACA GGAGGAGAGGGGTTGGCACCTGGCTGGATGGATGATGAGGATTTAGATAT TTAGATGGCCGGGGGGGTAGTTATGATGATGGACCCACTTTTTGATACCC CCACATATCATACAACACACCGCACTTGCCCCAACTCAGGCATTGGACCA AATCCAAGTACCATGCCGATTGGATTCAAACTTCTGGCGATGCTTGTCCT CTGCACTTTTTTCTTAATCGTCAGCGGGAGGACCAACGTTTTAAGGGGCG GCAGCAGCAGGGAGCTCAGAAGGGACACCAAGACCACTCTTGCTGGCGAC AAGGGCAGCGCTAACGCCAATAAAATGGAAGTGACCATCGATAAGAAGAA GAAGAAGGGCGCAGGTGCGGTGGCCGAGCCGGTGGAATCAGTCCCCACAG AAAAAGGCCCGAAGGAGGGCAAGGCTGATATGGTCGAGAAGGATGACGAG TACGATGCTGATATGGATGATGACAACATGATTGACGGGCTTGAAGAGGG GGAAGGGAAAGATGTTGATGAGGACGAAGATGAGGGGAAAGAGCCGACCT CGGAGAAAAACGAAGAAGCGGACAAAGAGCCAAGCGACCCTGCGACTGCT ACGGCTTTGGAGGACGGACGAGAGGGCAAGGAGAGTGACGCAACGGCGGA AGGGATGGATGAAACCAAGGATGCTGCTGACGACAAGGGAGAGGTGAAGG AGGAAGGAGACGAGGAGCAGGATGATGAGTCCAAACAGGGCAAGATGGGC TTGCTTCATGAAGCCACCACCACCAAGGGTGAGACAGCACCTGTCGCTGA AGCTGAAATAGGCACCGACACAGACAAGACCACCAGCGGCACAGGCGAGA GCAAGAAGGGTATCAGCGATGAAGTGAAGGAGGTGGATGGGAATGCTGCT GCTACTACCGCTTCTGAGGCTGTTGCTGAGAGTTCCAAATCTAAAAGTGG GCCGCCGAAGTTGGAAGACGCGGAAGATGACAAGGACACGAAAGCGGACG CCGCTGCTGCTGACGCCTCTTCTGCCCTAGCTGAGGGCGCTGGTGAGACT AATGAGAAAGATGTTGTTGGCGAGGCTGACGTTGGACCAGCAGACAGCAG CAGCAGCAGCAGCAGCAGCAACGATAAGAAGAAGAGCGTTGCCGAGGAAG AAATTACTGCTACCACCGCGACGGACGAAGGAAAGGAAAACACCGACAAT AAGGCTGATGAAAATAAAGAAGGAAAGGCCGAGGCAAGCGAAAGAAAGAG AAATGGCGAAGCTGCAGGACCAGAGAAAAAAGAGAAGGGGGTAGACAGCG CCACAGTCGAAAAACCCACCGATGATGGCAAGGTGCCAGCCGCGCCCGAC TCAGACTATTCTAATGTCCCCGACCCTGCATCTGCAGAGCAGGAGAAGCA GCAACAGAAACGGGAGCAGGATCAGCAGCAGCAGGAGCAGCATCAGCAGC AGCAGCAGCAGCAGCCGCAACAGCAAGTGGAGGTGACGGAGGTGAAAGAG GTCAAGGAAGGGGATGTTGCTCCTGTGATATCTGAATCAAGCACCGCCAC AGGCACTGCTGGTACTGGTGATGCATGCGATCCGCAGATCACGTGTAACG GGCATGGAAAGTGCAACGAGGATGGGAGCTGTCGTTGTTATCCTCCCTAC ACAGGGAGTGCGTGCTTGCGCGATGCATGCTTGGACATTTGGGACTGCAA CGAGTGCGTTGGCTCTAACTTGGGCTGTTACTTCTCTGACGGCGAGTGTC GCGGGGATGGATTGATTCGTCCGTCTTCGAAAAGCTCGCCTGTAAGATCG CAGCAGCAGGAGGAAGAGAAGATGCAACAGCATCAGACGAGTGCAGGGTT GGGAGCTGGGGTGACGTCGAGGCGGGATTCAGGAGGGAGAAAGGAGCTTC AGTCTGGAGAGGATTTGTTCGCCGAACTGGGCATGGAGGCGCAGCCGCAG TTTAACTTGAAGAGGCAGAATGACGCAGGGCCGCCCGGGCAGCAAATGAG TTGCACGCGGAGCAGTCGGTTATCGGCGGCGGGGACGAGTCCGGTGAAGG GAGGGAGTACAGGAGGAGAGGGGTTGGCACCTGGCTGGATGGATGATGAG GATTTAGATATTTAGATGGCCGGGGGGGTAGTTATGATGATGGACCCACT TTTTGATACCCCCACATATCATACAACACACCGCACTTGCCCCAACTCAG GCATTGGACCAAATCCAAGTACCATGCCGATTGGATTCAAACTTCTGGCG ATGCTTGTCCTCTGCACTTTTTTCTTAATCGTCAGCGGGAGGACCAACGT TTTAAGGGGCGGCAGCAGCAGGGAGCTCAGAAGGGACACCAAGACCACTC TTGCTGGCGACAAGGGCAGCGCTAACGCCAATAAAATGGAAGTGACCATC GATAAGAAGAAGAAGAAGGGCGCAGGTGCGGTGGCCGAGCCGGTGGAATC AGTCCCCACAGAAAAAGGCCCGAAGGAGGGCAAGGCTGATATGGTCGAGA AGGATGACGAGTACGATGCTGATATGGATGATGACAACATGATTGACGGG CTTGAAGAGGGGGAAGGGAAAGATGTTGATGAGGACGAAGATGAGGGGAA AGAGCCGACCTCGGAGAAAAACGAAGAAGCGGACAAAGAGCCAAGCGACC CTGCGACTGCTACGGCTTTGGAGGACGGACGAGAGGGCAAGGAGAGTGAC GCAACGGCGGAAGGGATGGATGAAACCAAGGATGCTGCTGACGACAAGGG AGAGGTGAAGGAGGAAGGAGACGAGGAGCAGGATGATGAGTCCAAACAGG GCAAGATGGGCTTGCTTCATGAAGCCACCACCACCAAGGGTGAGACAGCA CCTGTCGCTGAAGCTGAAATAGGCACCGACACAGACAAGACCACCAGCGG CACAGGCGAGAGCAAGAAGGGTATCAGCGATGAAGTGAAGGAGGTGGATG GGAATGCTGCTGCTACTACCGCTTCTGAGGCTGTTGCTGAGAGTTCCAAA TCTAAAAGTGGGCCGCCGAAGTTGGAAGACGCGGAAGATGACAAGGACAC GAAAGCGGACGCCGCTGCTGCTGACGCCTCTTCTGCCCTAGCTGAGGGCG CTGGTGAGACTAATGAGAAAGATGTTGTTGGCGAGGCTGACGTTGGACCA GCAGACAGCAGCAGCAGCAGCAGCAGCAGCAACGATAAGAAGAAGAGCGT TGCCGAGGAAGAAATTACTGCTACCACCGCGACGGACGAAGGAAAGGAAA ACACCGACAATAAGGCTGATGAAAATAAAGAAGGAAAGGCCGAGGCAAGC GAAAGAAAGAGAAATGGCGAAGCTGCAGGACCAGAGAAAAAAGAGAAGGG GGTAGACAGCGCCACAGTCGAAAAACCCACCGATGATGGCAAGGTGCCAG CCGCGCCCGACTCAGACTATTCTAATGTCCCCGACCCTGCATCTGCAGAG CAGGAGAAGCAGCAACAGAAACGGGAGCAGGATCAGCAGCAGCAGGAGCA GCATCAGCAGCAGCAGCAGCAGCAGCCGCAACAGCAAGTGGAGGTGACGG AGGTGAAAGAGGTCAAGGAAGGGGATGTTGCTCCTGTGATATCTGAATCA AGCACCGCCACAGGCACTGCTGGTACTGGTGATGCATGCGATCCGCAGAT CACGTGTAACGGGCATGGAAAGTGCAACGAGGATGGGAGCTGTCGTTGTT ATCCTCCCTACACAGGGAGTGCGTGCTTGCGCGATGCATGCTTGGACATT TGGGACTGCAACGAGTGCGTTGGCTCTAACTTGGGCTGTTACTTCTCTGA CGGCGAGTGTCGCGGGGATGGA back to top
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