jgi.p|Nanoce1779_2|363626, mRNA_3517 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|363626
Unique Name	mRNA_3517
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	953
Alignment location	scaffold_6:552667..554568 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	363712
Track	FilteredModels2
ProteinId	363626

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:552667..554568 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|363626	gene_3517	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|363626	mRNA_3517-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3517	CDS_3517	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:552667..554568+
coding sequence from alignment at scaffold_6:552667..554568+

mRNA sequence

>mRNA_3517 ID=mRNA_3517|Name=jgi.p|Nanoce1779_2|363626|organism=Nannochloropsis oceanica|type=mRNA|length=953bp
TGACGACGCATTTGTACAGGGTAGACGCCTGTTCTATTTTTCACGCGCCT
GCTCTCGGCTAGGCGGACCAATAGGTCTTCTTTCGGGCGCGGGAGCCGTG
GCATCCTTCTTTTACCGAGCCTACCAACACGATGGACGCACCACTCCTGG
ACCGGGCTGCGAGTGACTCTATGTTGCCCCGGTTCAGCACATTGGGCATG
CAAAATAGCATCCTTATAAGTGGGCGGATGGGAAGATTGCAAGAATCAGA
TAGAATAATGGCCTTCACCGATGCCACACTCGCCATCGTTTGCACGTCAT
GCGCCGTCCCGCTCTGGGCCAACGGGACGCATAATTTCAACCCCGTGCGT
TTAGTACCCTTTGTCACAAGTTTCTTCATCTTAGTCCGGCTCTGGGAAAA
GCACTGCCAAGACTTCATCCGCCTCGAGCACATCGATGAAAAGCTGCCAC
ACGTAAACGTCCTATGGATCGCTTCCCTCTCCCTCCTGCCCTTCAGTTTC
GTTGTCCTATTCGTCCCGACCACCACGAATGGGCACTTGATTTATTTAGG
TCTTTGGGCAGTAGTCCTGCTGCTGGTGGGAGGCACGTCGTACATGCTTT
CAGCTTCCGCTCGAAGACTCTCGGCATTGCAACCTTGTGATAGGGAGTAC
CAAGGATGGGTAGGAAGAGATAAGACTTTGGGTATATCCCTCTTCCAGAC
GTCTCCTGGAGCCATGATCCTGCCTCGCTCACAACTGCCGCGGCCTTCCT
CCTCTGCGCCAGCCTGTTACTGCTCCTCCTCCTGAACGCCGCATTGCGCG
CAGCACCATTGGCCGAGGCACCGGAAGGGATTCATCAAAGTCCTGATGCC
TTGCTTTCGGAGATGCTTGGTCGGCCAGTTGCGCGTGGAGCTGGTATTAT
TTCAGGCCATGTGTTGTCGCCTTCAAGGACGGTGAATCAAGAGGAGGAGG
AGG

protein sequence of jgi.p|Nanoce1779_2|363626

>mRNA_3517-protein ID=mRNA_3517-protein|Name=jgi.p|Nanoce1779_2|363626|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MDAPLLDRAASDSMLPRFSTLGMQNSILISGRMGRLQESDRIMAFTDATL
AIVCTSCAVPLWANGTHNFNPVRLVPFVTSFFILVRLWEKHCQDFIRLEH
IDEKLPHVNVLWIASLSLLPFSFVVLFVPTTTNGHLIYLGLWAVVLLLVG
GTSYMLSASARRLSALQPCDREYQGWVGRDKTLGISLFQTSPGAMILPRS
QLPRPSSSAPACYCSSS*

mRNA from alignment at scaffold_6:552667..554568+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3517 ID=mRNA_3517|Name=jgi.p|Nanoce1779_2|363626|organism=Nannochloropsis oceanica|type=mRNA|length=1902bp|location=Sequence derived from alignment at scaffold_6:552667..554568+ (Nannochloropsis oceanica)
TGACGACGCATTTGTACAGGGTAGACGCCTGTTCTATTTTTCACGCGCCT
GCTCTCGGCTAGGCGGACCAATAGGTCTTCTTTCGGGCGCGGGAGCCGTG
GCATCCTTCTTTTACCGAGCCTACCAACACGATGGACGCACCACTCCTGG
ACCGGGCTGCGAGTGACTCTATGTTGCCCCGGTTCAGCACATTGGGCATG
CAAAATAGCATCCTTATAAGTGGGCGGATGGGAAGATTGCAAGAATCAGA
TAGGTTTGTGGCCAAGGGAGGGTGGGAAAGAGATCGCGTTGAGGACGGAT
GGGGCGCAGGAAAAGCCTTGGCACGCTAGCGTCCGCTGGACACCACACAC
CACGTTTAGCAAGTGTCACGCGTGTCGACTCTCTTTATATCTCATCCAAA
AAATTTCCTGTCTTCCATCGTACCAGAATAATGGCCTTCACCGATGCCAC
ACTCGCCATCGTTTGCACGTCATGCGCCGTCCCGCTCTGGGCCAACGGGA
CGCATAATTTCAACCCCGTGCGTTTAGTACCCTTTGTCACAAGTTTCTTC
ATCTTAGTCCGGCTCTGGTACGTGGAGATGCAAAATCTTTGCTACGACAC
GCTGGGAGAGTTCTCAACCGCCTCCATTTTTCCGGGGGGGGAAGAATCAA
TGGAAGAACTGATTCCATTAAGGATGTTTTTACTGACAACCACATTATAT
AGAAGTGCATTTCGCACTGGTACAAAACTGATGCCACATACATTCATTAT
ATATTCATGCATTTGTTTTCAAATGATTATTCTCTGGCGGCACACACACA
CCAAAACCACTAAGGGAAAAGCACTGCCAAGACTTCATCCGCCTCGAGCA
CATCGATGAAAAGCTGCCACACGTAAACGTCCTATGGATCGCTTCCCTCT
CCCTCCTGCCCTTCAGTTTCGTTGTCCTATTCGTCCCGACCACCACGAAT
GGGCACTTGATTTATTTAGGTCTTTGGGCAGTAGTCCTGCTGCTGGTGGG
AGGCACGTCGTACATGCTTTCAGCTTCCGCTCGAAGACTCTCGGCATTGC
AACCTTGTGATAGGGAGTACCAAGGATGGGTAGGAAGAGATAAGACTTTG
GGTATATCCCTCTTCCAGGTGGGTTTGGTTATTGTTGCGGCTTCTCTTAT
TGCGTGGGAAGAGCACCTAGATATATTAAGCGATGACTACTTGAGGGCCT
TTCGACCAGGGCATGTGAGAGCCGCGGCCGTTGTGTGGGTGGTAGGCTTG
TTTGTCTTCTGGGGTGCTATGGCGGGGAGGATGAATTTTCGGCTGTTGCA
GCTGTGGCTGGGGAAGGAGAGTCCCGTGCTGTTTGAGGGGGCGGTGCCAC
GGGTGAGGGTGGAGATTTTTTCTGATGGAGTATACGCGGCATCGGCTACA
GGGCTGATGGTTGAGTTGCTGAATGGATTGCTGCACACCCAAGAAGGCAG
AAAGGATGGGGGGGGGGAGGGGACGGTTTGGCCAGGACTGATAAATTACA
TTTATTGCTTCCATATTGTCGCGGTGATGCATCGGAGCCATCAGAATATT
GTGGCAAAGATCCAGGCGTTCTCCCCGACGTTGCTCGCGATCAATTGCCT
AGTTTGCCTCTCTGTGGCATTCATCCCTACTCTAAACACCATCTTAGACG
TCTCCTGGAGCCATGATCCTGCCTCGCTCACAACTGCCGCGGCCTTCCTC
CTCTGCGCCAGCCTGTTACTGCTCCTCCTCCTGAACGCCGCATTGCGCGC
AGCACCATTGGCCGAGGCACCGGAAGGGATTCATCAAAGTCCTGATGCCT
TGCTTTCGGAGATGCTTGGTCGGCCAGTTGCGCGTGGAGCTGGTATTATT
TCAGGCCATGTGTTGTCGCCTTCAAGGACGGTGAATCAAGAGGAGGAGGA
GG

Coding sequence (CDS) from alignment at scaffold_6:552667..554568+

>mRNA_3517 ID=mRNA_3517|Name=jgi.p|Nanoce1779_2|363626|organism=Nannochloropsis oceanica|type=CDS|length=2616bp|location=Sequence derived from alignment at scaffold_6:552667..554568+ (Nannochloropsis oceanica)
ATGGACGCACCACTCCTGGACCGGGCTGCGAGTGACTCTATGTTGCCCCG
GTTCAGCACATTGGGCATGCAAAATAGCATCCTTATAAGTGGGCGGATGG
GAAGATTGCAAGAATCAGATAGAATAATGGCCTTCACCGATGCCACACTC
GCCATCGTTTGCACGTCATGCGCCGTCCCGCTCTGGGCCAACGGGACGCA
TAATTTCAACCCCGTGCGTTTAGTACCCTTTGTCACAAGTTTCTTCATCT
TAGTCCGGCTCTGGGAAAAGCACTGCCAAGACTTCATCCGCCTCGAGCAC
ATCGATGAAAAGCTGCCACACGTAAACGTCCTATGGATCGCTTCCCTCTC
CCTCCTGCCCTTCAGTTTCGTTGTCCTATTCGTCCCGACCACCACGAATG
GGCACTTGATTTATTTAGGTCTTTGGGCAGTAGTCCTGCTGCTGGTGGGA
GGCACGTCGTACATGCTTTCAGCTTCCGCTCGAAGACTCTCGGCATTGCA
ACCTTGTGATAGGGAGTACCAAGGATGGGTAGGAAGAGATAAGACTTTGG
GTATATCCCTCTTCCAGACGTCTCCTGGAGCCATGATCCTGCCTCGCTCA
CAACTGCCGCGGCCTTCCTCCTCTGCGCCAGCCTGTTACTGCTCCTCCTC
CTGAATGGACGCACCACTCCTGGACCGGGCTGCGAGTGACTCTATGTTGC
CCCGGTTCAGCACATTGGGCATGCAAAATAGCATCCTTATAAGTGGGCGG
ATGGGAAGATTGCAAGAATCAGATAGAATAATGGCCTTCACCGATGCCAC
ACTCGCCATCGTTTGCACGTCATGCGCCGTCCCGCTCTGGGCCAACGGGA
CGCATAATTTCAACCCCGTGCGTTTAGTACCCTTTGTCACAAGTTTCTTC
ATCTTAGTCCGGCTCTGGGAAAAGCACTGCCAAGACTTCATCCGCCTCGA
GCACATCGATGAAAAGCTGCCACACGTAAACGTCCTATGGATCGCTTCCC
TCTCCCTCCTGCCCTTCAGTTTCGTTGTCCTATTCGTCCCGACCACCACG
AATGGGCACTTGATTTATTTAGGTCTTTGGGCAGTAGTCCTGCTGCTGGT
GGGAGGCACGTCGTACATGCTTTCAGCTTCCGCTCGAAGACTCTCGGCAT
TGCAACCTTGTGATAGGGAGTACCAAGGATGGGTAGGAAGAGATAAGACT
TTGGGTATATCCCTCTTCCAGACGTCTCCTGGAGCCATGATCCTGCCTCG
CTCACAACTGCCGCGGCCTTCCTCCTCTGCGCCAGCCTGTTACTGCTCCT
CCTCCTGAATGGACGCACCACTCCTGGACCGGGCTGCGAGTGACTCTATG
TTGCCCCGGTTCAGCACATTGGGCATGCAAAATAGCATCCTTATAAGTGG
GCGGATGGGAAGATTGCAAGAATCAGATAGAATAATGGCCTTCACCGATG
CCACACTCGCCATCGTTTGCACGTCATGCGCCGTCCCGCTCTGGGCCAAC
GGGACGCATAATTTCAACCCCGTGCGTTTAGTACCCTTTGTCACAAGTTT
CTTCATCTTAGTCCGGCTCTGGGAAAAGCACTGCCAAGACTTCATCCGCC
TCGAGCACATCGATGAAAAGCTGCCACACGTAAACGTCCTATGGATCGCT
TCCCTCTCCCTCCTGCCCTTCAGTTTCGTTGTCCTATTCGTCCCGACCAC
CACGAATGGGCACTTGATTTATTTAGGTCTTTGGGCAGTAGTCCTGCTGC
TGGTGGGAGGCACGTCGTACATGCTTTCAGCTTCCGCTCGAAGACTCTCG
GCATTGCAACCTTGTGATAGGGAGTACCAAGGATGGGTAGGAAGAGATAA
GACTTTGGGTATATCCCTCTTCCAGACGTCTCCTGGAGCCATGATCCTGC
CTCGCTCACAACTGCCGCGGCCTTCCTCCTCTGCGCCAGCCTGTTACTGC
TCCTCCTCCTGAATGGACGCACCACTCCTGGACCGGGCTGCGAGTGACTC
TATGTTGCCCCGGTTCAGCACATTGGGCATGCAAAATAGCATCCTTATAA
GTGGGCGGATGGGAAGATTGCAAGAATCAGATAGAATAATGGCCTTCACC
GATGCCACACTCGCCATCGTTTGCACGTCATGCGCCGTCCCGCTCTGGGC
CAACGGGACGCATAATTTCAACCCCGTGCGTTTAGTACCCTTTGTCACAA
GTTTCTTCATCTTAGTCCGGCTCTGGGAAAAGCACTGCCAAGACTTCATC
CGCCTCGAGCACATCGATGAAAAGCTGCCACACGTAAACGTCCTATGGAT
CGCTTCCCTCTCCCTCCTGCCCTTCAGTTTCGTTGTCCTATTCGTCCCGA
CCACCACGAATGGGCACTTGATTTATTTAGGTCTTTGGGCAGTAGTCCTG
CTGCTGGTGGGAGGCACGTCGTACATGCTTTCAGCTTCCGCTCGAAGACT
CTCGGCATTGCAACCTTGTGATAGGGAGTACCAAGGATGGGTAGGAAGAG
ATAAGACTTTGGGTATATCCCTCTTCCAGACGTCTCCTGGAGCCATGATC
CTGCCTCGCTCACAACTGCCGCGGCCTTCCTCCTCTGCGCCAGCCTGTTA
CTGCTCCTCCTCCTGA

Synonyms

Publications