jgi.p|Nanoce1779_2|582436, mRNA_3516 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582436
Unique NamemRNA_3516
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1037
Alignment locationscaffold_6:551224..552260 +

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Properties
Property NameValue
TranscriptId582522
TrackFilteredModels2
ProteinId582436
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:551224..552260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582436gene_3516Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582436mRNA_3516-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3516CDS_3516Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3516 ID=mRNA_3516|Name=jgi.p|Nanoce1779_2|582436|organism=Nannochloropsis oceanica|type=mRNA|length=1037bp
GAACACCAATGAATACATGTTGCAGATATATCTACAATAAATGTGCCTGA
ATATTCTCTACACATCGCATTCACTCACGTTTCCCATCTCCGACCCCTGC
CTCCCCTTCAGATTTCTCCAGTGCCTCCTCCAACTTTCCAGTATCATCAT
GATCATCATGCGGGAGGTCTCTGTCCTGCCTGCATTGTTCCTCCTCGTCG
TCCTCAGCGTCCTGGCACCCGGAGCCACAGGCTTCCTGCTGCCTGTGCCA
GACTACTCAGTGCTATCCTCATATACAGCAGTAGGAACAGCCAAGAGTCA
TGGACGGGGCGCATCTATATACGCCGCCGGGGATAGCCATGCCTTTTTTC
TCAATACGCCCCCACGACCGCAAAAACAAGAGGAAATGGACCCCGACTTC
ATGGATGCGGCCATGGATCAAGCCATGCACACCGTCGCAATGGATTGGGA
GGGCGAAACATCTGCACCCGTTAAGCTCCAGACGTCGACGGCGGCAGCGA
CATCCTCCTTGCCCACCAACCCATTTGCGGCTTATGAAGAATTCATCGAG
GCACCTTCTACGCACTCGGTCTACTACCGAGGGCATCACGAAGCATCCTT
CTGGCGACAAGGCCGTGATATAATTCAATTAGTCGTGCCCGTAGAACCGG
CTTTGTCCAAATCAGACGTGAGGTTCGAATTGAGCACCAAGACACGCCTG
CGTTTGATCCTGGGCGAGACAAATGTGATTTTCGATAGGGAACTCTCTCA
GCCTGTCTATAGAGAAAGCTCGTTCTGGTACTTTGAAAAGAATCCCGAGG
AGGGTCAAAAGGCTATTGTGATTGAGTTGGATAAACGGCTGGGGTTCTCG
AACTGGCCGAAGCTTTTCCCTGAGGATGCAGATTTGAGTCAGGTAGCTCA
GGATGAGCCGACCGCGGCGGGGCAAAGTTCAGTAGTTGTCTAGAGGCGTG
TAGAGACGGAATTAAATGATTTGGAGACAAACAAATATTGAAAATCAAGA
AGAAGGAAAAACTGCTTACGAGGAGGTGATAGATGGA
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protein sequence of jgi.p|Nanoce1779_2|582436

>mRNA_3516-protein ID=mRNA_3516-protein|Name=jgi.p|Nanoce1779_2|582436|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MCLNILYTSHSLTFPISDPCLPFRFLQCLLQLSSIIMIIMREVSVLPALF
LLVVLSVLAPGATGFLLPVPDYSVLSSYTAVGTAKSHGRGASIYAAGDSH
AFFLNTPPRPQKQEEMDPDFMDAAMDQAMHTVAMDWEGETSAPVKLQTST
AAATSSLPTNPFAAYEEFIEAPSTHSVYYRGHHEASFWRQGRDIIQLVVP
VEPALSKSDVRFELSTKTRLRLILGETNVIFDRELSQPVYRESSFWYFEK
NPEEGQKAIVIELDKRLGFSNWPKLFPEDADLSQVAQDEPTAAGQSSVVV
*
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mRNA from alignment at scaffold_6:551224..552260+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3516 ID=mRNA_3516|Name=jgi.p|Nanoce1779_2|582436|organism=Nannochloropsis oceanica|type=mRNA|length=1037bp|location=Sequence derived from alignment at scaffold_6:551224..552260+ (Nannochloropsis oceanica)
GAACACCAATGAATACATGTTGCAGATATATCTACAATAAATGTGCCTGA
ATATTCTCTACACATCGCATTCACTCACGTTTCCCATCTCCGACCCCTGC
CTCCCCTTCAGATTTCTCCAGTGCCTCCTCCAACTTTCCAGTATCATCAT
GATCATCATGCGGGAGGTCTCTGTCCTGCCTGCATTGTTCCTCCTCGTCG
TCCTCAGCGTCCTGGCACCCGGAGCCACAGGCTTCCTGCTGCCTGTGCCA
GACTACTCAGTGCTATCCTCATATACAGCAGTAGGAACAGCCAAGAGTCA
TGGACGGGGCGCATCTATATACGCCGCCGGGGATAGCCATGCCTTTTTTC
TCAATACGCCCCCACGACCGCAAAAACAAGAGGAAATGGACCCCGACTTC
ATGGATGCGGCCATGGATCAAGCCATGCACACCGTCGCAATGGATTGGGA
GGGCGAAACATCTGCACCCGTTAAGCTCCAGACGTCGACGGCGGCAGCGA
CATCCTCCTTGCCCACCAACCCATTTGCGGCTTATGAAGAATTCATCGAG
GCACCTTCTACGCACTCGGTCTACTACCGAGGGCATCACGAAGCATCCTT
CTGGCGACAAGGCCGTGATATAATTCAATTAGTCGTGCCCGTAGAACCGG
CTTTGTCCAAATCAGACGTGAGGTTCGAATTGAGCACCAAGACACGCCTG
CGTTTGATCCTGGGCGAGACAAATGTGATTTTCGATAGGGAACTCTCTCA
GCCTGTCTATAGAGAAAGCTCGTTCTGGTACTTTGAAAAGAATCCCGAGG
AGGGTCAAAAGGCTATTGTGATTGAGTTGGATAAACGGCTGGGGTTCTCG
AACTGGCCGAAGCTTTTCCCTGAGGATGCAGATTTGAGTCAGGTAGCTCA
GGATGAGCCGACCGCGGCGGGGCAAAGTTCAGTAGTTGTCTAGAGGCGTG
TAGAGACGGAATTAAATGATTTGGAGACAAACAAATATTGAAAATCAAGA
AGAAGGAAAAACTGCTTACGAGGAGGTGATAGATGGA
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Coding sequence (CDS) from alignment at scaffold_6:551224..552260+

>mRNA_3516 ID=mRNA_3516|Name=jgi.p|Nanoce1779_2|582436|organism=Nannochloropsis oceanica|type=CDS|length=903bp|location=Sequence derived from alignment at scaffold_6:551224..552260+ (Nannochloropsis oceanica)
ATGTGCCTGAATATTCTCTACACATCGCATTCACTCACGTTTCCCATCTC
CGACCCCTGCCTCCCCTTCAGATTTCTCCAGTGCCTCCTCCAACTTTCCA
GTATCATCATGATCATCATGCGGGAGGTCTCTGTCCTGCCTGCATTGTTC
CTCCTCGTCGTCCTCAGCGTCCTGGCACCCGGAGCCACAGGCTTCCTGCT
GCCTGTGCCAGACTACTCAGTGCTATCCTCATATACAGCAGTAGGAACAG
CCAAGAGTCATGGACGGGGCGCATCTATATACGCCGCCGGGGATAGCCAT
GCCTTTTTTCTCAATACGCCCCCACGACCGCAAAAACAAGAGGAAATGGA
CCCCGACTTCATGGATGCGGCCATGGATCAAGCCATGCACACCGTCGCAA
TGGATTGGGAGGGCGAAACATCTGCACCCGTTAAGCTCCAGACGTCGACG
GCGGCAGCGACATCCTCCTTGCCCACCAACCCATTTGCGGCTTATGAAGA
ATTCATCGAGGCACCTTCTACGCACTCGGTCTACTACCGAGGGCATCACG
AAGCATCCTTCTGGCGACAAGGCCGTGATATAATTCAATTAGTCGTGCCC
GTAGAACCGGCTTTGTCCAAATCAGACGTGAGGTTCGAATTGAGCACCAA
GACACGCCTGCGTTTGATCCTGGGCGAGACAAATGTGATTTTCGATAGGG
AACTCTCTCAGCCTGTCTATAGAGAAAGCTCGTTCTGGTACTTTGAAAAG
AATCCCGAGGAGGGTCAAAAGGCTATTGTGATTGAGTTGGATAAACGGCT
GGGGTTCTCGAACTGGCCGAAGCTTTTCCCTGAGGATGCAGATTTGAGTC
AGGTAGCTCAGGATGAGCCGACCGCGGCGGGGCAAAGTTCAGTAGTTGTC
TAG
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Synonyms
Publications